Wall clock time and date at job start Tue Mar 31 2020 01:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47050 * 2 1 4 4 C 1.50703 * 109.46961 * 239.99902 * 2 1 3 5 5 H 1.07992 * 120.00372 * 274.93656 * 4 2 1 6 6 C 1.37882 * 119.99266 * 94.94046 * 4 2 1 7 7 N 1.31516 * 119.99543 * 184.89483 * 6 4 2 8 8 Si 1.86793 * 120.00327 * 4.89337 * 6 4 2 9 9 H 1.48507 * 109.47115 * 94.87721 * 8 6 4 10 10 H 1.48501 * 109.46968 * 214.87496 * 8 6 4 11 11 H 1.48496 * 109.47164 * 334.87526 * 8 6 4 12 12 N 1.46499 * 109.47202 * 120.00250 * 2 1 3 13 13 C 1.34775 * 119.99976 * 275.00236 * 12 2 1 14 14 O 1.21581 * 120.00001 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99661 * 179.97438 * 13 12 2 16 16 C 1.39987 * 119.99859 * 184.55310 * 15 13 12 17 17 C 1.38993 * 119.99553 * 144.60607 * 16 15 13 18 18 C 1.38218 * 120.23207 * 179.72674 * 17 16 15 19 19 C 1.38010 * 120.22676 * 0.55230 * 18 17 16 20 20 C 1.39619 * 119.99196 * 359.72554 * 19 18 17 21 21 C 1.47736 * 120.11977 * 180.02562 * 20 19 18 22 22 O 1.21471 * 120.00296 * 179.97438 * 21 20 19 23 23 O 1.34716 * 119.99977 * 359.97438 * 21 20 19 24 24 C 1.38580 * 119.99518 * 324.89026 * 16 15 13 25 25 H 1.09003 * 109.47442 * 175.01171 * 1 2 3 26 26 H 1.09002 * 109.47182 * 295.01070 * 1 2 3 27 27 H 1.09000 * 109.46983 * 55.00979 * 1 2 3 28 28 H 0.97002 * 120.00136 * 180.02562 * 7 6 4 29 29 H 0.96998 * 119.99942 * 94.99508 * 12 2 1 30 30 H 0.96999 * 120.00313 * 4.56054 * 15 13 12 31 31 H 1.07997 * 119.87978 * 0.02562 * 17 16 15 32 32 H 1.07995 * 119.88323 * 180.25791 * 18 17 16 33 33 H 1.07997 * 120.00284 * 179.70047 * 19 18 17 34 34 H 0.96696 * 116.99507 * 180.02562 * 23 21 20 35 35 H 1.07993 * 120.11346 * 359.96966 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1364 -1.7853 -1.2288 6 6 2.3590 0.0121 -2.3585 7 7 2.7050 -0.6132 -3.4625 8 14 2.3101 1.8790 -2.3186 9 1 3.6666 2.4034 -2.0183 10 1 1.8626 2.3907 -3.6388 11 1 1.3622 2.3269 -1.2669 12 7 2.0184 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8583 1.1614 2.4117 15 7 2.5958 -0.6539 3.4576 16 6 2.6394 0.0178 4.6850 17 6 2.3724 -0.6695 5.8632 18 6 2.4196 -0.0123 7.0782 19 6 2.7210 1.3335 7.1290 20 6 2.9852 2.0345 5.9508 21 6 3.3087 3.4751 6.0019 22 8 3.5387 4.0827 4.9755 23 8 3.3488 4.1148 7.1867 24 6 2.9430 1.3694 4.7246 25 1 -0.3634 -1.0238 -0.0894 26 1 -0.3634 0.4345 0.9313 27 1 -0.3633 0.5893 -0.8419 28 1 2.9353 -0.1050 -4.2560 29 1 2.2490 -1.6318 1.1525 30 1 2.8887 -1.5768 3.3992 31 1 2.1319 -1.7218 5.8295 32 1 2.2152 -0.5528 7.9906 33 1 2.7521 1.8445 8.0799 34 1 3.5645 5.0572 7.1696 35 1 3.1467 1.9060 3.8098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988295.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:11 Heat of formation + Delta-G solvation = -119.127533 kcal Electronic energy + Delta-G solvation = -20935.722194 eV Core-core repulsion = 17511.679089 eV Total energy + Delta-G solvation = -3424.043105 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.83269 -41.13689 -39.48468 -37.14155 -36.94653 -35.74552 -34.42153 -32.30342 -31.93495 -29.99344 -27.34318 -25.90538 -24.36752 -22.66173 -22.24797 -21.58304 -20.06035 -19.37604 -18.80666 -18.35032 -17.48443 -16.96916 -16.74804 -16.55967 -16.38354 -16.00999 -15.48168 -15.04387 -14.69365 -14.55821 -14.40795 -14.33177 -13.85366 -13.32466 -13.04793 -12.84451 -12.80971 -12.69958 -12.65261 -12.46703 -11.87876 -11.79527 -11.49562 -11.21670 -11.09911 -10.85058 -10.05783 -9.94140 -9.13816 -8.41779 -6.47206 -0.34878 0.32480 1.25360 1.32486 1.44122 1.46200 1.66779 2.01405 2.14092 2.24783 2.81568 2.95140 3.40487 3.90072 4.02430 4.13186 4.23991 4.41484 4.45855 4.59707 4.71757 4.81828 4.91645 5.06683 5.23622 5.28859 5.33885 5.35523 5.43631 5.47621 5.54637 5.71311 5.93646 5.94594 6.26997 6.58775 6.91994 7.13889 7.21228 7.58679 8.73008 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022941 B = 0.004414 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.209309 B = 6341.390885 C = 7223.624318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.247 3.753 3 H 0.029 0.971 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.038 3.962 7 N -0.926 5.926 8 Si 0.920 3.080 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.257 1.257 12 N -0.710 5.710 13 C 0.690 3.310 14 O -0.626 6.626 15 N -0.675 5.675 16 C 0.141 3.859 17 C -0.096 4.096 18 C -0.101 4.101 19 C -0.071 4.071 20 C -0.134 4.134 21 C 0.529 3.471 22 O -0.558 6.558 23 O -0.495 6.495 24 C -0.092 4.092 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.047 0.953 28 H 0.271 0.729 29 H 0.406 0.594 30 H 0.426 0.574 31 H 0.169 0.831 32 H 0.181 0.819 33 H 0.165 0.835 34 H 0.433 0.567 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 -0.786 25.787 25.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.143 3.857 3 H 0.047 0.953 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.163 4.163 7 N -0.565 5.565 8 Si 0.745 3.255 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.182 1.182 12 N -0.363 5.363 13 C 0.390 3.610 14 O -0.507 6.507 15 N -0.325 5.325 16 C 0.046 3.954 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.090 4.090 20 C -0.136 4.136 21 C 0.375 3.625 22 O -0.451 6.451 23 O -0.309 6.309 24 C -0.114 4.114 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.241 0.759 30 H 0.265 0.735 31 H 0.187 0.813 32 H 0.199 0.801 33 H 0.182 0.818 34 H 0.294 0.706 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.245 0.009 25.257 25.258 hybrid contribution 0.606 0.936 -1.168 1.615 sum 0.362 0.946 24.089 24.111 Atomic orbital electron populations 1.22107 0.97076 1.01367 0.99311 1.18887 0.91913 0.92980 0.81905 0.95267 1.21166 1.44277 0.94964 0.95753 0.91978 1.25512 0.93774 1.01893 0.95087 1.69961 1.46534 1.37564 1.02425 0.86148 0.79209 0.82054 0.78107 1.20481 1.19796 1.18160 1.45547 1.68688 1.14193 1.07888 1.16340 0.78427 0.84951 0.81263 1.90890 1.58884 1.16089 1.84792 1.42437 1.67571 1.17052 1.05428 1.17608 1.00653 0.91431 0.85719 1.21612 0.97665 1.02310 0.90088 1.21450 0.98247 0.93568 0.98599 1.21730 0.95136 0.95057 0.97042 1.18970 1.09561 0.89946 0.95100 1.21114 0.72081 0.88555 0.80786 1.90922 1.47886 1.69125 1.37132 1.84479 1.82579 1.31642 1.32169 1.21297 0.97542 0.95053 0.97461 0.92029 0.94746 0.93357 0.91951 0.75860 0.73474 0.81345 0.80124 0.81766 0.70559 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 9.47 71.98 0.68 -5.40 16 2 C 0.25 11.84 2.20 44.25 0.10 11.93 16 3 H 0.03 1.57 4.50 -2.39 -0.01 1.56 16 4 C -0.52 -28.15 9.05 25.60 0.23 -27.92 16 5 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 6 C 0.04 2.16 5.47 84.66 0.46 2.62 16 7 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 8 Si 0.92 45.61 27.31 68.60 1.87 47.49 16 9 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.26 -12.76 6.36 99.48 0.63 -12.13 16 12 N -0.71 -27.99 5.07 -461.42 -2.34 -30.33 16 13 C 0.69 26.90 8.37 179.05 1.50 28.40 16 14 O -0.63 -30.34 13.44 -3.97 -0.05 -30.39 16 15 N -0.67 -18.62 5.34 -317.27 -1.70 -20.32 16 16 C 0.14 3.74 6.29 38.10 0.24 3.98 16 17 C -0.10 -1.54 9.96 22.45 0.22 -1.31 16 18 C -0.10 -1.24 10.02 22.21 0.22 -1.02 16 19 C -0.07 -1.19 9.61 22.55 0.22 -0.97 16 20 C -0.13 -3.58 5.87 -20.12 -0.12 -3.69 16 21 C 0.53 14.73 8.27 70.33 0.58 15.31 16 22 O -0.56 -21.04 17.13 19.93 0.34 -20.70 16 23 O -0.50 -8.44 12.68 -56.26 -0.71 -9.15 16 24 C -0.09 -3.07 8.24 22.67 0.19 -2.88 16 25 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.41 13.38 8.61 -92.71 -0.80 12.58 16 30 H 0.43 8.03 8.84 -92.71 -0.82 7.21 16 31 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.16 1.81 7.60 -2.91 -0.02 1.78 16 34 H 0.43 3.58 9.11 -74.06 -0.67 2.91 16 35 H 0.11 4.71 5.81 -2.91 -0.02 4.69 16 Total: -1.00 -81.16 309.71 1.04 -80.12 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -1.19 Total: 19.04 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 4.53 Total: 19.04 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -3.74 Total: -105.45 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -0.43 Total: -60.24 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.87 Total: 47.49 kcal Total: -81.16 1.04 -80.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988295.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.009 kcal (2) G-P(sol) polarization free energy of solvation -81.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds