Wall clock time and date at job start Tue Mar 31 2020 01:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46491 * 2 1 4 4 C 1.50694 * 109.47086 * 119.99779 * 2 1 3 5 5 H 1.07999 * 119.99906 * 120.00026 * 4 2 1 6 6 C 1.37883 * 120.00412 * 300.27613 * 4 2 1 7 7 N 1.31511 * 119.99753 * 359.72894 * 6 4 2 8 8 Si 1.86800 * 120.00098 * 179.72343 * 6 4 2 9 9 H 1.48506 * 109.46862 * 60.00114 * 8 6 4 10 10 H 1.48496 * 109.47165 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47388 * 300.00461 * 8 6 4 12 12 N 1.46497 * 109.47012 * 240.00326 * 2 1 3 13 13 C 1.34775 * 120.00344 * 84.99635 * 12 2 1 14 14 O 1.21593 * 119.99828 * 0.02562 * 13 12 2 15 15 N 1.34766 * 120.00074 * 179.97438 * 13 12 2 16 16 C 1.39983 * 120.00304 * 175.39056 * 15 13 12 17 17 C 1.38987 * 120.00022 * 214.83342 * 16 15 13 18 18 C 1.38225 * 120.23507 * 179.71835 * 17 16 15 19 19 C 1.38005 * 120.22383 * 0.55291 * 18 17 16 20 20 C 1.39626 * 119.99289 * 359.72592 * 19 18 17 21 21 C 1.47748 * 120.11724 * 180.02562 * 20 19 18 22 22 O 1.21465 * 120.00066 * 179.97438 * 21 20 19 23 23 O 1.34705 * 119.99866 * 359.97060 * 21 20 19 24 24 C 1.38581 * 119.99191 * 35.10078 * 16 15 13 25 25 H 1.09000 * 109.46918 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47025 * 299.99477 * 1 2 3 27 27 H 1.08994 * 109.47306 * 59.99728 * 1 2 3 28 28 H 0.97002 * 120.00053 * 179.97438 * 7 6 4 29 29 H 0.97004 * 119.99939 * 264.99462 * 12 2 1 30 30 H 0.96999 * 120.00449 * 355.39095 * 15 13 12 31 31 H 1.08000 * 119.87797 * 0.02562 * 17 16 15 32 32 H 1.07996 * 119.88501 * 180.25121 * 18 17 16 33 33 H 1.08003 * 120.00474 * 179.73965 * 19 18 17 34 34 H 0.96701 * 116.99965 * 179.97438 * 23 21 20 35 35 H 1.08003 * 120.11706 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6946 -0.2426 2.4828 7 7 0.9385 0.8266 2.6034 8 14 2.3110 -1.1277 4.0079 9 1 3.7960 -1.1284 4.0137 10 1 1.8121 -0.4305 5.2204 11 1 1.8155 -2.5276 4.0021 12 7 2.0184 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1617 -2.4116 15 7 2.5967 -0.6534 -3.4574 16 6 2.6392 0.0180 -4.6850 17 6 2.3847 -0.6727 -5.8640 18 6 2.4196 -0.0133 -7.0783 19 6 2.7187 1.3330 -7.1294 20 6 2.9816 2.0348 -5.9514 21 6 3.3016 3.4763 -6.0029 22 8 3.5295 4.0849 -4.9767 23 8 3.3406 4.1156 -7.1879 24 6 2.9405 1.3701 -4.7251 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 0.7005 1.1555 3.4845 29 1 2.2491 -1.6317 -1.1527 30 1 2.8910 -1.5758 -3.3988 31 1 2.1539 -1.7272 -5.8306 32 1 2.2170 -0.5546 -7.9906 33 1 2.7492 1.8437 -8.0806 34 1 3.5539 5.0586 -7.1712 35 1 3.1424 1.9076 -3.8103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:16 Heat of formation + Delta-G solvation = -91.872356 kcal Electronic energy + Delta-G solvation = -20814.482805 eV Core-core repulsion = 17391.621574 eV Total energy + Delta-G solvation = -3422.861231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.62085 -39.83392 -38.25527 -36.10439 -35.19117 -34.26272 -32.45257 -31.30724 -29.95078 -28.23402 -25.26429 -24.86890 -23.09130 -21.42898 -21.07509 -19.87305 -18.31586 -18.21942 -17.64797 -16.32365 -16.07857 -15.66306 -15.62705 -15.16477 -14.90363 -14.41767 -13.99090 -13.84159 -13.37224 -13.20162 -12.81142 -12.40980 -12.00646 -11.77117 -11.63702 -11.56580 -11.11786 -11.00326 -10.79264 -10.62942 -10.37695 -10.24112 -10.17543 -9.47441 -9.07927 -9.05879 -8.58061 -8.23214 -7.83754 -6.13304 -4.23030 0.64997 1.33265 2.51541 2.86136 3.15396 3.25068 3.30780 3.32415 3.60317 3.92959 4.31181 4.74887 4.84557 4.89588 5.09187 5.15809 5.19156 5.39299 5.55751 5.81715 6.20730 6.23418 6.31277 6.42768 6.50279 6.77648 6.95907 7.02522 7.07985 7.18690 7.42493 7.60041 7.80219 7.86339 7.96254 8.13820 8.68981 8.80898 9.17983 9.44864 10.92673 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027974 B = 0.003719 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.697735 B = 7527.760102 C = 8130.503191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.716 5.716 13 C 0.690 3.310 14 O -0.578 6.578 15 N -0.696 5.696 16 C 0.170 3.830 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.090 4.090 20 C -0.112 4.112 21 C 0.525 3.475 22 O -0.502 6.502 23 O -0.516 6.516 24 C -0.058 4.058 25 H 0.026 0.974 26 H 0.091 0.909 27 H 0.015 0.985 28 H 0.266 0.734 29 H 0.387 0.613 30 H 0.405 0.595 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.412 0.588 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -3.033 -19.520 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.367 5.367 13 C 0.390 3.610 14 O -0.455 6.455 15 N -0.344 5.344 16 C 0.073 3.927 17 C -0.141 4.141 18 C -0.134 4.134 19 C -0.109 4.109 20 C -0.114 4.114 21 C 0.368 3.632 22 O -0.390 6.390 23 O -0.328 6.328 24 C -0.078 4.078 25 H 0.045 0.955 26 H 0.110 0.890 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.219 0.781 30 H 0.240 0.760 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.271 0.729 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.432 -2.080 -18.958 19.378 hybrid contribution 0.598 -0.784 0.945 1.366 sum 4.030 -2.864 -18.014 18.680 Atomic orbital electron populations 1.22106 0.98471 0.99092 1.01012 1.18714 0.90909 0.93832 0.78760 0.93152 1.21156 1.32633 1.13417 0.90232 0.92106 1.24880 0.94774 0.94963 0.99032 1.69893 1.35581 1.22379 1.24071 0.86483 0.79145 0.79537 0.81762 1.20167 1.21096 1.20178 1.45871 1.68380 1.13323 1.09142 1.16205 0.78749 0.85544 0.80463 1.90914 1.56825 1.13955 1.83793 1.42838 1.68666 1.16427 1.06515 1.17354 0.98501 0.91861 0.84950 1.21175 1.00671 1.00723 0.91506 1.20857 1.00932 0.94213 0.97406 1.21329 0.97738 0.94333 0.97497 1.18870 1.08058 0.89815 0.94608 1.20913 0.73385 0.88219 0.80658 1.90946 1.45067 1.67932 1.35098 1.84536 1.83571 1.29901 1.34758 1.21587 0.94359 0.93717 0.98183 0.95511 0.89035 0.96569 0.92443 0.78111 0.75981 0.85139 0.84983 0.84696 0.72940 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.28 7.12 2.56 -69.08 -0.18 6.94 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.54 -14.10 8.73 -34.44 -0.30 -14.40 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.88 11.31 55.43 0.63 -24.26 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.72 -14.68 5.07 -59.81 -0.30 -14.99 16 13 C 0.69 13.89 8.37 -86.93 -0.73 13.16 16 14 O -0.58 -14.12 13.43 5.28 0.07 -14.05 16 15 N -0.70 -10.28 5.34 -14.26 -0.08 -10.36 16 16 C 0.17 2.44 6.30 -83.73 -0.53 1.92 16 17 C -0.12 -1.27 9.96 -39.31 -0.39 -1.66 16 18 C -0.12 -1.08 10.02 -39.67 -0.40 -1.48 16 19 C -0.09 -0.96 9.61 -39.15 -0.38 -1.34 16 20 C -0.11 -1.57 5.87 -105.00 -0.62 -2.19 16 21 C 0.52 7.44 8.27 34.62 0.29 7.73 16 22 O -0.50 -9.09 17.13 -19.24 -0.33 -9.42 16 23 O -0.52 -5.03 12.68 -40.51 -0.51 -5.54 16 24 C -0.06 -0.96 8.24 -38.97 -0.32 -1.28 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.49 6.06 -51.93 -0.31 2.17 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.39 6.64 8.56 -40.82 -0.35 6.29 16 30 H 0.40 4.38 8.84 -40.82 -0.36 4.02 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.14 1.15 7.60 -52.48 -0.40 0.75 16 34 H 0.41 2.17 9.11 45.56 0.42 2.59 16 35 H 0.16 3.26 5.81 -52.48 -0.30 2.95 16 LS Contribution 310.32 15.07 4.68 4.68 Total: -1.00 -34.32 310.32 -7.11 -41.43 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -2.94 Total: 11.24 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -3.30 Total: 5.74 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.25 Total: -49.60 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.77 Total: -29.01 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.32 -7.11 -41.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.441 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds