Wall clock time and date at job start Tue Mar 31 2020 01:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46491 * 2 1 4 4 C 1.50694 * 109.47086 * 119.99779 * 2 1 3 5 5 H 1.07999 * 119.99906 * 120.00026 * 4 2 1 6 6 C 1.37883 * 120.00412 * 300.27613 * 4 2 1 7 7 N 1.31511 * 119.99753 * 359.72894 * 6 4 2 8 8 Si 1.86800 * 120.00098 * 179.72343 * 6 4 2 9 9 H 1.48506 * 109.46862 * 60.00114 * 8 6 4 10 10 H 1.48496 * 109.47165 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47388 * 300.00461 * 8 6 4 12 12 N 1.46497 * 109.47012 * 240.00326 * 2 1 3 13 13 C 1.34775 * 120.00344 * 84.99635 * 12 2 1 14 14 O 1.21593 * 119.99828 * 0.02562 * 13 12 2 15 15 N 1.34766 * 120.00074 * 179.97438 * 13 12 2 16 16 C 1.39983 * 120.00304 * 175.39056 * 15 13 12 17 17 C 1.38987 * 120.00022 * 214.83342 * 16 15 13 18 18 C 1.38225 * 120.23507 * 179.71835 * 17 16 15 19 19 C 1.38005 * 120.22383 * 0.55291 * 18 17 16 20 20 C 1.39626 * 119.99289 * 359.72592 * 19 18 17 21 21 C 1.47748 * 120.11724 * 180.02562 * 20 19 18 22 22 O 1.21465 * 120.00066 * 179.97438 * 21 20 19 23 23 O 1.34705 * 119.99866 * 359.97060 * 21 20 19 24 24 C 1.38581 * 119.99191 * 35.10078 * 16 15 13 25 25 H 1.09000 * 109.46918 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47025 * 299.99477 * 1 2 3 27 27 H 1.08994 * 109.47306 * 59.99728 * 1 2 3 28 28 H 0.97002 * 120.00053 * 179.97438 * 7 6 4 29 29 H 0.97004 * 119.99939 * 264.99462 * 12 2 1 30 30 H 0.96999 * 120.00449 * 355.39095 * 15 13 12 31 31 H 1.08000 * 119.87797 * 0.02562 * 17 16 15 32 32 H 1.07996 * 119.88501 * 180.25121 * 18 17 16 33 33 H 1.08003 * 120.00474 * 179.73965 * 19 18 17 34 34 H 0.96701 * 116.99965 * 179.97438 * 23 21 20 35 35 H 1.08003 * 120.11706 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6946 -0.2426 2.4828 7 7 0.9385 0.8266 2.6034 8 14 2.3110 -1.1277 4.0079 9 1 3.7960 -1.1284 4.0137 10 1 1.8121 -0.4305 5.2204 11 1 1.8155 -2.5276 4.0021 12 7 2.0184 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1617 -2.4116 15 7 2.5967 -0.6534 -3.4574 16 6 2.6392 0.0180 -4.6850 17 6 2.3847 -0.6727 -5.8640 18 6 2.4196 -0.0133 -7.0783 19 6 2.7187 1.3330 -7.1294 20 6 2.9816 2.0348 -5.9514 21 6 3.3016 3.4763 -6.0029 22 8 3.5295 4.0849 -4.9767 23 8 3.3406 4.1156 -7.1879 24 6 2.9405 1.3701 -4.7251 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 0.7005 1.1555 3.4845 29 1 2.2491 -1.6317 -1.1527 30 1 2.8910 -1.5758 -3.3988 31 1 2.1539 -1.7272 -5.8306 32 1 2.2170 -0.5546 -7.9906 33 1 2.7492 1.8437 -8.0806 34 1 3.5539 5.0586 -7.1712 35 1 3.1424 1.9076 -3.8103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:14 Heat of formation + Delta-G solvation = -118.462718 kcal Electronic energy + Delta-G solvation = -20815.635850 eV Core-core repulsion = 17391.621574 eV Total energy + Delta-G solvation = -3424.014276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.81652 -41.12088 -39.46054 -37.13675 -36.92713 -35.74021 -34.35888 -32.28385 -31.45064 -29.78808 -27.34712 -25.90180 -24.40282 -22.79797 -22.25984 -21.58381 -19.85164 -19.37822 -18.76370 -17.97359 -17.36907 -16.95566 -16.74012 -16.57651 -16.44621 -15.93765 -15.47142 -15.08984 -14.61247 -14.43673 -14.35329 -13.96822 -13.66045 -13.00239 -12.91296 -12.83024 -12.74839 -12.67597 -12.64067 -12.27452 -12.15277 -11.78839 -11.48625 -11.13200 -11.07324 -10.60824 -10.05226 -9.89556 -9.12618 -8.17922 -6.36031 -0.34438 0.33287 1.44592 1.47118 1.47890 1.55491 1.69948 2.02057 2.16864 2.42095 2.82384 3.12585 3.42143 3.90634 4.02965 4.13745 4.24556 4.43634 4.58653 4.72892 4.89991 4.93272 5.07384 5.22410 5.30351 5.34202 5.39065 5.47359 5.54318 5.58161 5.64515 5.83102 5.94945 6.07795 6.23393 6.71580 6.92702 7.20949 7.32936 7.64962 8.88523 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027974 B = 0.003719 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.697735 B = 7527.760102 C = 8130.503191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.287 3.713 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.976 3.024 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.261 1.261 12 N -0.711 5.711 13 C 0.688 3.312 14 O -0.628 6.628 15 N -0.674 5.674 16 C 0.141 3.859 17 C -0.097 4.097 18 C -0.100 4.100 19 C -0.071 4.071 20 C -0.134 4.134 21 C 0.528 3.472 22 O -0.558 6.558 23 O -0.495 6.495 24 C -0.094 4.094 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.008 0.992 28 H 0.266 0.734 29 H 0.406 0.594 30 H 0.426 0.574 31 H 0.170 0.830 32 H 0.183 0.817 33 H 0.166 0.834 34 H 0.433 0.567 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 -6.137 -22.307 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.183 3.817 3 H 0.013 0.987 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.800 3.200 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.186 1.186 12 N -0.364 5.364 13 C 0.389 3.611 14 O -0.508 6.508 15 N -0.324 5.324 16 C 0.046 3.954 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.090 4.090 20 C -0.136 4.136 21 C 0.374 3.626 22 O -0.451 6.451 23 O -0.308 6.308 24 C -0.115 4.115 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.241 0.759 30 H 0.265 0.735 31 H 0.188 0.812 32 H 0.200 0.800 33 H 0.183 0.817 34 H 0.294 0.706 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.715 -5.241 -21.841 22.766 hybrid contribution 0.537 0.238 1.581 1.687 sum 4.252 -5.003 -20.260 21.297 Atomic orbital electron populations 1.21910 0.98277 0.99561 0.99441 1.18265 0.91015 0.91575 0.80800 0.98709 1.21502 1.32743 1.13804 0.90548 0.90517 1.25836 0.94807 0.95590 1.02422 1.70060 1.36859 1.23997 1.24734 0.85341 0.78556 0.78750 0.77333 1.19656 1.21285 1.18552 1.45407 1.68725 1.13997 1.08224 1.16344 0.78491 0.84925 0.81360 1.90902 1.58766 1.16409 1.84746 1.42403 1.67592 1.17040 1.05361 1.17623 1.00641 0.91413 0.85756 1.21608 0.97778 1.02297 0.90031 1.21459 0.98195 0.93542 0.98611 1.21735 0.95165 0.95085 0.97003 1.18981 1.09581 0.89942 0.95090 1.21114 0.72074 0.88581 0.80794 1.90925 1.47854 1.69111 1.37172 1.84474 1.82649 1.31595 1.32106 1.21298 0.97613 0.95134 0.97429 0.93762 0.91444 0.97240 0.92518 0.75885 0.73464 0.81246 0.80000 0.81682 0.70555 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.90 9.26 71.98 0.67 -6.23 16 2 C 0.29 15.25 2.56 44.25 0.11 15.37 16 3 H -0.01 -0.32 7.58 -2.38 -0.02 -0.34 16 4 C -0.55 -29.14 8.73 25.60 0.22 -28.92 16 5 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -53.55 11.31 21.45 0.24 -53.31 16 8 Si 0.98 42.11 29.54 68.60 2.03 44.13 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 12 N -0.71 -29.79 5.07 -461.41 -2.34 -32.13 16 13 C 0.69 28.86 8.37 179.06 1.50 30.36 16 14 O -0.63 -33.17 13.43 -4.01 -0.05 -33.22 16 15 N -0.67 -19.68 5.34 -317.28 -1.70 -21.38 16 16 C 0.14 3.96 6.30 38.10 0.24 4.20 16 17 C -0.10 -1.65 9.96 22.45 0.22 -1.42 16 18 C -0.10 -1.33 10.02 22.21 0.22 -1.10 16 19 C -0.07 -1.27 9.61 22.55 0.22 -1.05 16 20 C -0.13 -3.78 5.87 -20.11 -0.12 -3.90 16 21 C 0.53 15.47 8.27 70.34 0.58 16.05 16 22 O -0.56 -21.96 17.13 19.95 0.34 -21.62 16 23 O -0.49 -8.97 12.68 -56.15 -0.71 -9.68 16 24 C -0.09 -3.28 8.24 22.67 0.19 -3.09 16 25 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.07 3.83 6.06 -2.38 -0.01 3.81 16 27 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.41 13.63 8.56 -92.71 -0.79 12.84 16 30 H 0.43 8.39 8.84 -92.71 -0.82 7.57 16 31 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 32 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 33 H 0.17 1.96 7.60 -2.91 -0.02 1.94 16 34 H 0.43 4.03 9.11 -74.06 -0.67 3.35 16 35 H 0.11 4.87 5.81 -2.91 -0.02 4.85 16 Total: -1.00 -82.73 310.32 1.20 -81.54 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -1.12 Total: 24.24 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 4.50 Total: 21.44 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.79 Total: -106.82 kcal Atomic # 8 Polarization: -64.10 SS G_CDS: -0.42 Total: -64.53 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -82.73 1.20 -81.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.925 kcal (2) G-P(sol) polarization free energy of solvation -82.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds