Wall clock time and date at job start Tue Mar 31 2020 01:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47054 * 2 1 4 4 C 1.50702 * 109.47042 * 120.00282 * 2 1 3 5 5 O 1.21284 * 120.00219 * 91.45213 * 4 2 1 6 6 N 1.34786 * 119.99462 * 271.17441 * 4 2 1 7 7 C 1.37095 * 119.99450 * 177.30827 * 6 4 2 8 8 H 1.07998 * 120.00296 * 6.90773 * 7 6 4 9 9 C 1.38952 * 119.99946 * 186.91219 * 7 6 4 10 10 N 1.31409 * 119.99745 * 19.53897 * 9 7 6 11 11 Si 1.86802 * 120.00076 * 199.55008 * 9 7 6 12 12 H 1.48499 * 109.47034 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47181 * 119.99388 * 11 9 7 14 14 H 1.48501 * 109.46707 * 239.99457 * 11 9 7 15 15 C 1.46492 * 119.99920 * 357.30371 * 6 4 2 16 16 C 1.50702 * 109.47101 * 93.83227 * 15 6 4 17 17 O 1.20826 * 119.99890 * 359.97438 * 16 15 6 18 18 O 1.34230 * 120.00162 * 179.97438 * 16 15 6 19 19 C 1.50697 * 109.47009 * 239.99934 * 2 1 3 20 20 C 1.38651 * 120.79356 * 299.72081 * 19 2 1 21 21 C 1.38201 * 119.16539 * 179.75651 * 20 19 2 22 22 N 1.31877 * 120.76216 * 0.52855 * 21 20 19 23 23 C 1.31873 * 121.72300 * 359.74443 * 22 21 20 24 24 C 1.38199 * 120.76664 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47446 * 185.57825 * 1 2 3 26 26 H 1.08995 * 109.47211 * 305.57768 * 1 2 3 27 27 H 1.09004 * 109.46932 * 65.57736 * 1 2 3 28 28 H 0.97004 * 120.00272 * 180.02562 * 10 9 7 29 29 H 1.09000 * 109.47063 * 213.82290 * 15 6 4 30 30 H 1.09000 * 109.47897 * 333.82623 * 15 6 4 31 31 H 0.96703 * 116.99701 * 179.97438 * 18 16 15 32 32 H 1.08002 * 120.41222 * 359.97438 * 20 19 2 33 33 H 1.07999 * 119.62119 * 180.29132 * 21 20 19 34 34 H 1.07998 * 119.61428 * 179.97438 * 23 22 21 35 35 H 1.08003 * 120.41786 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.2596 -1.9012 1.1929 6 7 2.2344 -0.0214 2.3711 7 6 2.6384 -0.6769 3.5054 8 1 2.9023 -1.7232 3.4595 9 6 2.7083 0.0048 4.7142 10 7 2.0463 1.1286 4.8739 11 14 3.7435 -0.6762 6.1121 12 1 4.3839 -1.9449 5.6812 13 1 4.7926 0.3094 6.4768 14 1 2.8764 -0.9349 7.2895 15 6 2.0223 1.4278 2.3987 16 6 0.6193 1.7214 2.8638 17 8 -0.1271 0.8132 3.1431 18 8 0.1987 2.9919 2.9678 19 6 2.0323 -0.7104 -1.2304 20 6 1.7122 -2.0392 -1.4633 21 6 2.1868 -2.6562 -2.6052 22 7 2.9438 -1.9990 -3.4620 23 6 3.2727 -0.7364 -3.2702 24 6 2.8303 -0.0524 -2.1538 25 1 -0.3634 -1.0228 0.0999 26 1 -0.3633 0.5979 0.8358 27 1 -0.3633 0.4249 -0.9358 28 1 2.0953 1.6048 5.7176 29 1 2.7355 1.8864 3.0837 30 1 2.1662 1.8353 1.3980 31 1 -0.7094 3.1304 3.2700 32 1 1.0967 -2.5842 -0.7628 33 1 1.9380 -3.6897 -2.7962 34 1 3.8951 -0.2312 -3.9939 35 1 3.1028 0.9817 -2.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589341582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:30 Heat of formation + Delta-G solvation = -73.496875 kcal Electronic energy + Delta-G solvation = -22211.403054 eV Core-core repulsion = 18789.338643 eV Total energy + Delta-G solvation = -3422.064411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.23517 -39.35572 -38.20433 -35.42786 -34.66809 -34.08104 -31.85093 -30.92802 -30.02653 -27.79297 -25.47199 -24.23000 -23.11935 -21.89184 -21.10567 -18.90857 -17.19019 -17.15019 -16.70326 -16.19964 -15.60433 -15.57995 -15.35285 -14.69578 -14.50237 -14.10610 -13.85791 -13.45818 -13.38532 -13.06205 -12.72300 -12.24859 -11.89783 -11.82986 -11.56694 -11.46464 -11.29762 -11.05190 -10.80810 -10.46947 -10.35682 -10.26530 -9.67031 -9.37211 -9.20609 -9.11324 -8.84300 -8.47468 -8.08480 -6.55033 -3.96064 1.43544 1.56431 3.05753 3.19199 3.26907 3.40994 3.60536 3.92070 4.13747 4.19069 4.59530 4.70335 4.88170 4.94582 5.08011 5.36500 5.37525 5.42436 5.52648 5.66948 5.80206 5.94268 6.00492 6.09696 6.14669 6.28494 6.42500 6.50080 6.60101 6.75772 7.00141 7.43962 7.51214 7.83728 8.21913 8.25858 8.97873 9.03018 9.21170 9.70836 10.52599 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020922 B = 0.006113 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.972877 B = 4579.603081 C = 5374.895572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 H 0.091 0.909 4 C 0.463 3.537 5 O -0.570 6.570 6 N -0.428 5.428 7 C -0.295 4.295 8 H 0.111 0.889 9 C 0.028 3.972 10 N -0.889 5.889 11 Si 0.933 3.067 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.282 1.282 15 C 0.142 3.858 16 C 0.498 3.502 17 O -0.508 6.508 18 O -0.535 6.535 19 C -0.016 4.016 20 C -0.127 4.127 21 C 0.086 3.914 22 N -0.494 5.494 23 C 0.086 3.914 24 C -0.171 4.171 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.272 0.728 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.391 0.609 32 H 0.140 0.860 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 4.677 -8.814 10.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 H 0.109 0.891 4 C 0.251 3.749 5 O -0.453 6.453 6 N -0.147 5.147 7 C -0.422 4.422 8 H 0.129 0.871 9 C -0.173 4.173 10 N -0.531 5.531 11 Si 0.760 3.240 12 H -0.191 1.191 13 H -0.205 1.205 14 H -0.208 1.208 15 C 0.015 3.985 16 C 0.338 3.662 17 O -0.393 6.393 18 O -0.346 6.346 19 C -0.025 4.025 20 C -0.147 4.147 21 C -0.070 4.070 22 N -0.203 5.203 23 C -0.071 4.071 24 C -0.191 4.191 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.093 0.907 31 H 0.247 0.753 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.523 3.428 -9.448 10.064 hybrid contribution -0.584 0.538 2.057 2.205 sum -1.107 3.966 -7.391 8.460 Atomic orbital electron populations 1.21708 0.92068 1.03351 1.01969 1.20338 0.97809 0.99577 0.91977 0.89140 1.19628 0.83373 0.87424 0.84451 1.90530 1.55422 1.14916 1.84414 1.43511 1.57272 1.04591 1.09315 1.19841 1.39963 0.97374 0.84984 0.87114 1.25190 0.97107 0.96393 0.98632 1.69598 1.38752 1.18111 1.26666 0.85742 0.79327 0.79075 0.79877 1.19137 1.20469 1.20832 1.20957 0.92462 0.84383 1.00665 1.23586 0.89928 0.79149 0.73489 1.90598 1.56310 1.46377 1.46056 1.84521 1.36162 1.32478 1.81447 1.19938 0.94307 0.94245 0.93974 1.22102 1.00466 0.94797 0.97313 1.22688 0.93998 0.99761 0.90520 1.67592 1.12498 1.09144 1.31106 1.22569 0.97850 0.90594 0.96083 1.22018 0.99708 1.01434 0.95930 0.91795 0.91368 0.92335 0.91684 0.84915 0.90701 0.75314 0.84243 0.83136 0.83228 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.92 37.16 0.33 -1.88 16 2 C -0.08 -1.34 2.36 -92.92 -0.22 -1.56 16 3 H 0.09 1.41 5.61 -51.93 -0.29 1.11 16 4 C 0.46 10.69 6.69 -10.98 -0.07 10.62 16 5 O -0.57 -14.86 14.20 5.55 0.08 -14.78 16 6 N -0.43 -10.36 2.14 -116.10 -0.25 -10.61 16 7 C -0.29 -7.88 9.41 -14.93 -0.14 -8.02 16 8 H 0.11 3.15 7.25 -52.49 -0.38 2.77 16 9 C 0.03 0.70 5.07 -17.47 -0.09 0.61 16 10 N -0.89 -22.35 8.42 55.50 0.47 -21.88 16 11 Si 0.93 20.25 29.60 -169.99 -5.03 15.22 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 C 0.14 2.96 5.15 -5.20 -0.03 2.93 16 16 C 0.50 10.57 5.08 36.01 0.18 10.75 16 17 O -0.51 -12.59 15.70 -18.75 -0.29 -12.89 16 18 O -0.54 -9.27 13.42 -39.26 -0.53 -9.80 16 19 C -0.02 -0.27 4.68 -104.32 -0.49 -0.76 16 20 C -0.13 -2.16 8.11 -39.44 -0.32 -2.48 16 21 C 0.09 1.33 11.18 -17.55 -0.20 1.14 16 22 N -0.49 -7.76 10.36 -13.25 -0.14 -7.90 16 23 C 0.09 1.20 11.18 -17.55 -0.20 1.00 16 24 C -0.17 -2.44 9.76 -39.44 -0.39 -2.83 16 25 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 26 H 0.07 1.22 5.62 -51.93 -0.29 0.93 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.13 2.91 6.28 -51.93 -0.33 2.59 16 30 H 0.08 1.26 5.68 -51.93 -0.29 0.97 16 31 H 0.39 5.19 9.10 45.56 0.41 5.61 16 32 H 0.14 2.49 7.03 -52.49 -0.37 2.12 16 33 H 0.15 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.13 1.50 8.01 -52.48 -0.42 1.08 16 LS Contribution 297.64 15.07 4.49 4.49 Total: -1.00 -32.62 297.64 -5.59 -38.21 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -2.76 Total: 10.41 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -1.62 Total: 9.53 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.08 Total: -40.39 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.74 Total: -37.46 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.62 -5.59 -38.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.286 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds