Wall clock time and date at job start Tue Mar 31 2020 01:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47054 * 2 1 4 4 C 1.50702 * 109.47042 * 120.00282 * 2 1 3 5 5 O 1.21284 * 120.00219 * 91.45213 * 4 2 1 6 6 N 1.34786 * 119.99462 * 271.17441 * 4 2 1 7 7 C 1.37095 * 119.99450 * 177.30827 * 6 4 2 8 8 H 1.07998 * 120.00296 * 6.90773 * 7 6 4 9 9 C 1.38952 * 119.99946 * 186.91219 * 7 6 4 10 10 N 1.31409 * 119.99745 * 19.53897 * 9 7 6 11 11 Si 1.86802 * 120.00076 * 199.55008 * 9 7 6 12 12 H 1.48499 * 109.47034 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47181 * 119.99388 * 11 9 7 14 14 H 1.48501 * 109.46707 * 239.99457 * 11 9 7 15 15 C 1.46492 * 119.99920 * 357.30371 * 6 4 2 16 16 C 1.50702 * 109.47101 * 93.83227 * 15 6 4 17 17 O 1.20826 * 119.99890 * 359.97438 * 16 15 6 18 18 O 1.34230 * 120.00162 * 179.97438 * 16 15 6 19 19 C 1.50697 * 109.47009 * 239.99934 * 2 1 3 20 20 C 1.38651 * 120.79356 * 299.72081 * 19 2 1 21 21 C 1.38201 * 119.16539 * 179.75651 * 20 19 2 22 22 N 1.31877 * 120.76216 * 0.52855 * 21 20 19 23 23 C 1.31873 * 121.72300 * 359.74443 * 22 21 20 24 24 C 1.38199 * 120.76664 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47446 * 185.57825 * 1 2 3 26 26 H 1.08995 * 109.47211 * 305.57768 * 1 2 3 27 27 H 1.09004 * 109.46932 * 65.57736 * 1 2 3 28 28 H 0.97004 * 120.00272 * 180.02562 * 10 9 7 29 29 H 1.09000 * 109.47063 * 213.82290 * 15 6 4 30 30 H 1.09000 * 109.47897 * 333.82623 * 15 6 4 31 31 H 0.96703 * 116.99701 * 179.97438 * 18 16 15 32 32 H 1.08002 * 120.41222 * 359.97438 * 20 19 2 33 33 H 1.07999 * 119.62119 * 180.29132 * 21 20 19 34 34 H 1.07998 * 119.61428 * 179.97438 * 23 22 21 35 35 H 1.08003 * 120.41786 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.2596 -1.9012 1.1929 6 7 2.2344 -0.0214 2.3711 7 6 2.6384 -0.6769 3.5054 8 1 2.9023 -1.7232 3.4595 9 6 2.7083 0.0048 4.7142 10 7 2.0463 1.1286 4.8739 11 14 3.7435 -0.6762 6.1121 12 1 4.3839 -1.9449 5.6812 13 1 4.7926 0.3094 6.4768 14 1 2.8764 -0.9349 7.2895 15 6 2.0223 1.4278 2.3987 16 6 0.6193 1.7214 2.8638 17 8 -0.1271 0.8132 3.1431 18 8 0.1987 2.9919 2.9678 19 6 2.0323 -0.7104 -1.2304 20 6 1.7122 -2.0392 -1.4633 21 6 2.1868 -2.6562 -2.6052 22 7 2.9438 -1.9990 -3.4620 23 6 3.2727 -0.7364 -3.2702 24 6 2.8303 -0.0524 -2.1538 25 1 -0.3634 -1.0228 0.0999 26 1 -0.3633 0.5979 0.8358 27 1 -0.3633 0.4249 -0.9358 28 1 2.0953 1.6048 5.7176 29 1 2.7355 1.8864 3.0837 30 1 2.1662 1.8353 1.3980 31 1 -0.7094 3.1304 3.2700 32 1 1.0967 -2.5842 -0.7628 33 1 1.9380 -3.6897 -2.7962 34 1 3.8951 -0.2312 -3.9939 35 1 3.1028 0.9817 -2.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589341582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:29 Heat of formation + Delta-G solvation = -95.748205 kcal Electronic energy + Delta-G solvation = -22212.367944 eV Core-core repulsion = 18789.338643 eV Total energy + Delta-G solvation = -3423.029301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67098 -40.83514 -39.83578 -37.10411 -36.33273 -35.60039 -33.70925 -32.06811 -31.34875 -29.51834 -27.21357 -25.67533 -24.28040 -23.34597 -22.70452 -20.50043 -18.98897 -18.77366 -18.30637 -17.49517 -17.23351 -17.02486 -16.59339 -16.24311 -16.20224 -15.80495 -15.39533 -14.90640 -14.60434 -14.42754 -14.17798 -13.80273 -13.57628 -13.48346 -13.08547 -12.95502 -12.75935 -12.58717 -12.39797 -12.19312 -12.10220 -11.89100 -11.46170 -10.93888 -10.69578 -10.40547 -10.21818 -9.97052 -9.92353 -8.46362 -5.94343 0.28622 0.34858 1.31548 1.40551 1.53856 1.73371 1.92399 2.22160 2.54703 2.82541 3.03471 3.14243 3.54335 3.66762 3.71262 3.89667 4.10132 4.22906 4.32839 4.36824 4.43018 4.72048 4.73391 4.79638 4.85102 4.99064 5.00668 5.06206 5.18613 5.43130 5.52780 5.84426 5.96291 6.04031 6.35981 7.07180 7.08081 7.30243 7.52587 7.89129 8.58521 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020922 B = 0.006113 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.972877 B = 4579.603081 C = 5374.895572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.063 4.063 3 H 0.119 0.881 4 C 0.453 3.547 5 O -0.613 6.613 6 N -0.441 5.441 7 C -0.332 4.332 8 H 0.078 0.922 9 C 0.001 3.999 10 N -0.894 5.894 11 Si 0.990 3.010 12 H -0.277 1.277 13 H -0.260 1.260 14 H -0.283 1.283 15 C 0.138 3.862 16 C 0.505 3.495 17 O -0.550 6.550 18 O -0.520 6.520 19 C -0.036 4.036 20 C -0.147 4.147 21 C 0.082 3.918 22 N -0.508 5.508 23 C 0.088 3.912 24 C -0.164 4.164 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.276 0.724 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.411 0.589 32 H 0.117 0.883 33 H 0.169 0.831 34 H 0.189 0.811 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.489 6.965 -9.997 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.084 4.084 3 H 0.137 0.863 4 C 0.243 3.757 5 O -0.499 6.499 6 N -0.160 5.160 7 C -0.459 4.459 8 H 0.096 0.904 9 C -0.199 4.199 10 N -0.535 5.535 11 Si 0.814 3.186 12 H -0.202 1.202 13 H -0.185 1.185 14 H -0.209 1.209 15 C 0.013 3.987 16 C 0.348 3.652 17 O -0.439 6.439 18 O -0.332 6.332 19 C -0.044 4.044 20 C -0.167 4.167 21 C -0.074 4.074 22 N -0.218 5.218 23 C -0.069 4.069 24 C -0.184 4.184 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.271 0.729 32 H 0.135 0.865 33 H 0.186 0.814 34 H 0.205 0.795 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.109 5.780 -10.633 12.103 hybrid contribution -0.817 -0.127 2.394 2.533 sum -0.709 5.653 -8.239 10.017 Atomic orbital electron populations 1.21660 0.91357 1.02156 1.03230 1.20276 0.98228 1.00285 0.89634 0.86277 1.20614 0.82112 0.87330 0.85664 1.90493 1.56899 1.17068 1.85403 1.43639 1.57451 1.05967 1.08921 1.19650 1.42604 0.96710 0.86938 0.90443 1.25823 0.97356 0.96741 0.99977 1.69676 1.38362 1.18293 1.27170 0.84924 0.78164 0.78436 0.77033 1.20226 1.18476 1.20907 1.21074 0.92078 0.82612 1.02932 1.23559 0.89701 0.79540 0.72420 1.90593 1.57478 1.47888 1.47975 1.84446 1.37816 1.30067 1.80897 1.20017 0.95710 0.94360 0.94362 1.22044 1.01377 0.95472 0.97814 1.22935 0.93766 1.00672 0.89984 1.67678 1.12676 1.10261 1.31173 1.23239 0.97184 0.89996 0.96510 1.22366 0.98082 1.02940 0.94971 0.93844 0.92647 0.88752 0.91334 0.85953 0.86335 0.72943 0.86498 0.81366 0.79456 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.92 71.98 0.64 -3.44 16 2 C -0.06 -2.16 2.36 -12.29 -0.03 -2.19 16 3 H 0.12 3.30 5.61 -2.39 -0.01 3.28 16 4 C 0.45 21.30 6.69 87.66 0.59 21.89 16 5 O -0.61 -33.55 14.20 -3.04 -0.04 -33.60 16 6 N -0.44 -21.64 2.14 -639.61 -1.37 -23.00 16 7 C -0.33 -18.34 9.41 84.04 0.79 -17.55 16 8 H 0.08 4.69 7.25 -2.91 -0.02 4.67 16 9 C 0.00 0.07 5.07 84.93 0.43 0.50 16 10 N -0.89 -44.51 8.42 21.66 0.18 -44.32 16 11 Si 0.99 41.81 29.60 68.60 2.03 43.84 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 15 C 0.14 5.60 5.15 85.64 0.44 6.04 16 16 C 0.51 20.84 5.08 71.24 0.36 21.20 16 17 O -0.55 -27.33 15.70 21.96 0.34 -26.98 16 18 O -0.52 -16.70 13.42 -51.42 -0.69 -17.39 16 19 C -0.04 -1.16 4.68 -19.67 -0.09 -1.25 16 20 C -0.15 -5.05 8.11 22.36 0.18 -4.87 16 21 C 0.08 2.49 11.18 84.68 0.95 3.44 16 22 N -0.51 -14.97 10.36 -195.84 -2.03 -17.00 16 23 C 0.09 2.14 11.18 84.68 0.95 3.09 16 24 C -0.16 -4.14 9.76 22.36 0.22 -3.92 16 25 H 0.04 1.55 7.70 -2.39 -0.02 1.53 16 26 H 0.05 1.93 5.62 -2.39 -0.01 1.92 16 27 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.28 13.01 8.31 -92.71 -0.77 12.24 16 29 H 0.12 5.24 6.28 -2.39 -0.01 5.22 16 30 H 0.12 3.64 5.68 -2.39 -0.01 3.63 16 31 H 0.41 9.86 9.10 -74.06 -0.67 9.19 16 32 H 0.12 4.46 7.03 -2.91 -0.02 4.44 16 33 H 0.17 4.24 8.06 -2.91 -0.02 4.21 16 34 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.17 2.95 8.01 -2.91 -0.02 2.92 16 Total: -1.00 -73.26 297.64 4.33 -68.93 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.47 Total: 26.58 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 5.43 Total: 22.95 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -3.21 Total: -84.32 kcal Atomic # 8 Polarization: -77.58 SS G_CDS: -0.39 Total: -77.97 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -73.26 4.33 -68.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.816 kcal (2) G-P(sol) polarization free energy of solvation -73.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds