Wall clock time and date at job start Tue Mar 31 2020 01:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46904 * 2 1 4 4 C 1.50697 * 109.47375 * 239.99510 * 2 1 3 5 5 O 1.21292 * 119.99831 * 277.83413 * 4 2 1 6 6 N 1.34772 * 119.99775 * 97.83317 * 4 2 1 7 7 C 1.37095 * 120.00266 * 4.39330 * 6 4 2 8 8 H 1.07994 * 120.00026 * 342.41656 * 7 6 4 9 9 C 1.38958 * 119.99887 * 162.40681 * 7 6 4 10 10 N 1.31407 * 120.00123 * 345.02720 * 9 7 6 11 11 Si 1.86802 * 119.99685 * 165.02613 * 9 7 6 12 12 H 1.48495 * 109.47047 * 60.00307 * 11 9 7 13 13 H 1.48501 * 109.46852 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46949 * 300.00148 * 11 9 7 15 15 C 1.46510 * 119.99919 * 184.39781 * 6 4 2 16 16 C 1.50701 * 109.46550 * 275.29434 * 15 6 4 17 17 O 1.20816 * 120.00568 * 359.97438 * 16 15 6 18 18 O 1.34238 * 119.99524 * 179.97438 * 16 15 6 19 19 C 1.50705 * 109.47116 * 119.99480 * 2 1 3 20 20 C 1.38648 * 120.79002 * 59.71633 * 19 2 1 21 21 C 1.38203 * 119.16542 * 179.75672 * 20 19 2 22 22 N 1.31871 * 120.75940 * 0.53629 * 21 20 19 23 23 C 1.31869 * 121.72791 * 359.73819 * 22 21 20 24 24 C 1.38210 * 120.76576 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46535 * 55.37391 * 1 2 3 26 26 H 1.08997 * 109.46848 * 175.37489 * 1 2 3 27 27 H 1.08997 * 109.47006 * 295.37249 * 1 2 3 28 28 H 0.96997 * 120.00027 * 179.97438 * 10 9 7 29 29 H 1.08998 * 109.46489 * 35.29085 * 15 6 4 30 30 H 1.08999 * 109.47077 * 155.29658 * 15 6 4 31 31 H 0.96693 * 116.99731 * 180.02562 * 18 16 15 32 32 H 1.08005 * 120.41706 * 0.02562 * 20 19 2 33 33 H 1.07997 * 119.61900 * 180.25834 * 21 20 19 34 34 H 1.08002 * 119.62050 * 180.02562 * 23 22 21 35 35 H 1.07997 * 120.41990 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.0996 -1.9214 -1.2464 6 7 2.4070 -0.0003 -2.3128 7 6 2.4168 1.3697 -2.2641 8 1 1.8702 1.8864 -1.4891 9 6 3.1302 2.0936 -3.2117 10 7 4.0220 1.4900 -3.9649 11 14 2.8214 3.9246 -3.4150 12 1 3.1144 4.6209 -2.1366 13 1 3.7028 4.4595 -4.4839 14 1 1.4013 4.1488 -3.7867 15 6 2.8038 -0.6924 -3.5417 16 6 4.2601 -1.0708 -3.4571 17 8 4.9009 -0.7907 -2.4720 18 8 4.8453 -1.7191 -4.4766 19 6 2.0324 -0.7103 1.2306 20 6 1.7027 -2.0357 1.4693 21 6 2.1860 -2.6557 2.6060 22 7 2.9429 -1.9984 3.4627 23 6 3.2719 -0.7359 3.2708 24 6 2.8305 -0.0522 2.1538 25 1 -0.3632 0.5839 -0.8456 26 1 -0.3633 -1.0243 -0.0829 27 1 -0.3633 0.4403 0.9285 28 1 4.5197 1.9952 -4.6266 29 1 2.2009 -1.5925 -3.6624 30 1 2.6485 -0.0336 -4.3960 31 1 5.7810 -1.9410 -4.3763 32 1 1.0796 -2.5781 0.7735 33 1 1.9372 -3.6891 2.7970 34 1 3.8943 -0.2306 3.9945 35 1 3.1037 0.9816 2.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589341583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:34 Heat of formation + Delta-G solvation = -81.029849 kcal Electronic energy + Delta-G solvation = -22178.963096 eV Core-core repulsion = 18756.572031 eV Total energy + Delta-G solvation = -3422.391065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.08419 -39.22599 -38.15448 -35.35036 -34.57654 -34.06454 -31.67588 -30.80896 -30.11658 -27.89518 -25.07356 -24.28862 -23.00395 -22.05623 -20.47435 -19.24768 -17.32732 -16.92012 -16.72803 -15.86523 -15.57183 -15.44715 -15.17046 -14.45714 -14.34695 -14.30833 -13.76676 -13.43835 -13.33161 -12.90150 -12.76830 -12.16386 -11.84621 -11.57641 -11.52418 -11.44239 -11.20668 -10.98421 -10.95908 -10.57801 -10.33281 -10.24103 -9.67728 -9.29687 -9.10643 -9.08412 -8.73623 -8.48405 -8.06554 -6.58313 -4.12161 1.55759 1.67170 3.02146 3.11250 3.12866 3.52911 3.69402 3.93802 4.18855 4.24340 4.61071 4.80376 4.90372 5.08577 5.21023 5.52748 5.61390 5.67701 5.75231 5.80020 6.04730 6.12374 6.19699 6.29459 6.32423 6.38402 6.51831 6.58849 6.67695 6.90031 7.10848 7.23335 7.48307 7.62882 8.12211 8.32205 8.87495 9.16313 9.26653 9.64583 10.48444 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.006801 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.973536 B = 4115.990876 C = 4858.826466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 H 0.107 0.893 4 C 0.480 3.520 5 O -0.594 6.594 6 N -0.427 5.427 7 C -0.336 4.336 8 H 0.106 0.894 9 C 0.037 3.963 10 N -0.876 5.876 11 Si 0.930 3.070 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.159 3.841 16 C 0.501 3.499 17 O -0.512 6.512 18 O -0.536 6.536 19 C -0.015 4.015 20 C -0.134 4.134 21 C 0.083 3.917 22 N -0.496 5.496 23 C 0.086 3.914 24 C -0.165 4.165 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.274 0.726 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.390 0.610 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 -0.577 3.731 5.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 H 0.125 0.875 4 C 0.268 3.732 5 O -0.479 6.479 6 N -0.145 5.145 7 C -0.463 4.463 8 H 0.123 0.877 9 C -0.167 4.167 10 N -0.514 5.514 11 Si 0.756 3.244 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.196 1.196 15 C 0.033 3.967 16 C 0.341 3.659 17 O -0.398 6.398 18 O -0.347 6.347 19 C -0.024 4.024 20 C -0.154 4.154 21 C -0.073 4.073 22 N -0.205 5.205 23 C -0.071 4.071 24 C -0.185 4.185 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.146 0.854 31 H 0.246 0.754 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.394 -1.345 4.519 6.445 hybrid contribution 0.649 1.442 -1.013 1.878 sum -3.744 0.097 3.506 5.130 Atomic orbital electron populations 1.21643 0.92562 1.02501 1.02114 1.20169 0.97002 1.00936 0.90665 0.87509 1.19815 0.82471 0.87118 0.83784 1.90533 1.60661 1.14228 1.82471 1.43356 1.56174 1.06300 1.08701 1.19646 1.31112 0.79827 1.15732 0.87658 1.25260 0.93989 1.00739 0.96751 1.69729 1.21191 1.37595 1.22922 0.85939 0.78470 0.81570 0.78409 1.19733 1.20796 1.19640 1.20494 0.87479 0.97548 0.91181 1.23670 0.91477 0.71706 0.79002 1.90560 1.65143 1.50745 1.33307 1.84522 1.30257 1.72064 1.47814 1.20020 0.94130 0.94113 0.94106 1.22117 1.00859 0.94935 0.97487 1.22652 0.94231 0.99637 0.90769 1.67570 1.12643 1.09167 1.31124 1.22572 0.97794 0.90571 0.96196 1.22075 0.99124 1.01689 0.95616 0.91356 0.92219 0.92355 0.91474 0.90399 0.85395 0.75437 0.84223 0.83312 0.83285 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.93 37.16 0.33 -1.68 16 2 C -0.07 -1.26 2.41 -92.92 -0.22 -1.49 16 3 H 0.11 2.02 5.68 -51.93 -0.30 1.73 16 4 C 0.48 11.09 6.40 -10.99 -0.07 11.02 16 5 O -0.59 -14.83 14.47 5.55 0.08 -14.75 16 6 N -0.43 -10.28 2.17 -116.09 -0.25 -10.53 16 7 C -0.34 -7.99 9.03 -14.93 -0.13 -8.12 16 8 H 0.11 2.30 5.93 -52.49 -0.31 1.98 16 9 C 0.04 0.88 5.04 -17.47 -0.09 0.79 16 10 N -0.88 -21.96 8.93 55.50 0.50 -21.47 16 11 Si 0.93 18.48 29.58 -169.99 -5.03 13.46 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 15 C 0.16 3.71 5.11 -5.19 -0.03 3.68 16 16 C 0.50 12.19 6.45 36.01 0.23 12.43 16 17 O -0.51 -14.29 16.85 -18.74 -0.32 -14.61 16 18 O -0.54 -10.81 13.42 -39.28 -0.53 -11.34 16 19 C -0.02 -0.28 4.74 -104.32 -0.49 -0.77 16 20 C -0.13 -2.38 8.22 -39.44 -0.32 -2.71 16 21 C 0.08 1.37 11.18 -17.55 -0.20 1.18 16 22 N -0.50 -8.50 10.36 -13.25 -0.14 -8.64 16 23 C 0.09 1.36 11.18 -17.55 -0.20 1.17 16 24 C -0.17 -2.77 9.76 -39.44 -0.39 -3.16 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.92 7.64 -51.93 -0.40 0.52 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.08 1.70 7.65 -51.93 -0.40 1.30 16 30 H 0.13 2.97 6.27 -51.93 -0.33 2.65 16 31 H 0.39 6.18 9.10 45.56 0.41 6.59 16 32 H 0.14 2.48 6.86 -52.48 -0.36 2.12 16 33 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.13 1.98 8.01 -52.49 -0.42 1.56 16 LS Contribution 303.42 15.07 4.57 4.57 Total: -1.00 -31.79 303.42 -5.61 -37.39 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -2.92 Total: 13.59 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -1.58 Total: 12.33 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.11 Total: -40.63 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.76 Total: -40.70 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.79 -5.61 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.639 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds