Wall clock time and date at job start Tue Mar 31 2020 01:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46904 * 2 1 4 4 C 1.50697 * 109.47375 * 239.99510 * 2 1 3 5 5 O 1.21292 * 119.99831 * 277.83413 * 4 2 1 6 6 N 1.34772 * 119.99775 * 97.83317 * 4 2 1 7 7 C 1.37095 * 120.00266 * 4.39330 * 6 4 2 8 8 H 1.07994 * 120.00026 * 342.41656 * 7 6 4 9 9 C 1.38958 * 119.99887 * 162.40681 * 7 6 4 10 10 N 1.31407 * 120.00123 * 345.02720 * 9 7 6 11 11 Si 1.86802 * 119.99685 * 165.02613 * 9 7 6 12 12 H 1.48495 * 109.47047 * 60.00307 * 11 9 7 13 13 H 1.48501 * 109.46852 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46949 * 300.00148 * 11 9 7 15 15 C 1.46510 * 119.99919 * 184.39781 * 6 4 2 16 16 C 1.50701 * 109.46550 * 275.29434 * 15 6 4 17 17 O 1.20816 * 120.00568 * 359.97438 * 16 15 6 18 18 O 1.34238 * 119.99524 * 179.97438 * 16 15 6 19 19 C 1.50705 * 109.47116 * 119.99480 * 2 1 3 20 20 C 1.38648 * 120.79002 * 59.71633 * 19 2 1 21 21 C 1.38203 * 119.16542 * 179.75672 * 20 19 2 22 22 N 1.31871 * 120.75940 * 0.53629 * 21 20 19 23 23 C 1.31869 * 121.72791 * 359.73819 * 22 21 20 24 24 C 1.38210 * 120.76576 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46535 * 55.37391 * 1 2 3 26 26 H 1.08997 * 109.46848 * 175.37489 * 1 2 3 27 27 H 1.08997 * 109.47006 * 295.37249 * 1 2 3 28 28 H 0.96997 * 120.00027 * 179.97438 * 10 9 7 29 29 H 1.08998 * 109.46489 * 35.29085 * 15 6 4 30 30 H 1.08999 * 109.47077 * 155.29658 * 15 6 4 31 31 H 0.96693 * 116.99731 * 180.02562 * 18 16 15 32 32 H 1.08005 * 120.41706 * 0.02562 * 20 19 2 33 33 H 1.07997 * 119.61900 * 180.25834 * 21 20 19 34 34 H 1.08002 * 119.62050 * 180.02562 * 23 22 21 35 35 H 1.07997 * 120.41990 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.0996 -1.9214 -1.2464 6 7 2.4070 -0.0003 -2.3128 7 6 2.4168 1.3697 -2.2641 8 1 1.8702 1.8864 -1.4891 9 6 3.1302 2.0936 -3.2117 10 7 4.0220 1.4900 -3.9649 11 14 2.8214 3.9246 -3.4150 12 1 3.1144 4.6209 -2.1366 13 1 3.7028 4.4595 -4.4839 14 1 1.4013 4.1488 -3.7867 15 6 2.8038 -0.6924 -3.5417 16 6 4.2601 -1.0708 -3.4571 17 8 4.9009 -0.7907 -2.4720 18 8 4.8453 -1.7191 -4.4766 19 6 2.0324 -0.7103 1.2306 20 6 1.7027 -2.0357 1.4693 21 6 2.1860 -2.6557 2.6060 22 7 2.9429 -1.9984 3.4627 23 6 3.2719 -0.7359 3.2708 24 6 2.8305 -0.0522 2.1538 25 1 -0.3632 0.5839 -0.8456 26 1 -0.3633 -1.0243 -0.0829 27 1 -0.3633 0.4403 0.9285 28 1 4.5197 1.9952 -4.6266 29 1 2.2009 -1.5925 -3.6624 30 1 2.6485 -0.0336 -4.3960 31 1 5.7810 -1.9410 -4.3763 32 1 1.0796 -2.5781 0.7735 33 1 1.9372 -3.6891 2.7970 34 1 3.8943 -0.2306 3.9945 35 1 3.1037 0.9816 2.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589341583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:32 Heat of formation + Delta-G solvation = -101.691433 kcal Electronic energy + Delta-G solvation = -22179.859049 eV Core-core repulsion = 18756.572031 eV Total energy + Delta-G solvation = -3423.287019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.59828 -40.90396 -39.87965 -37.10791 -36.45311 -35.55152 -33.49039 -32.08128 -31.50546 -29.64797 -26.82502 -25.71657 -24.29080 -23.62335 -22.14527 -20.98781 -19.02386 -18.71114 -18.36428 -17.44510 -17.26185 -16.89986 -16.53485 -16.20029 -16.10595 -15.92053 -15.36620 -14.91913 -14.66941 -14.31460 -14.19461 -13.86438 -13.47220 -13.29328 -13.06739 -12.90237 -12.64527 -12.51792 -12.47603 -12.19292 -12.13774 -11.86901 -11.54703 -10.98882 -10.72899 -10.39897 -10.18903 -9.97517 -9.90359 -8.37464 -5.96844 0.27414 0.33033 1.44421 1.50714 1.59948 1.75143 1.86358 2.27377 2.51459 2.81492 2.99912 3.18969 3.60922 3.68783 3.90401 4.18267 4.25179 4.30862 4.40464 4.42410 4.49515 4.75365 4.78120 4.85847 4.91017 4.94617 5.00069 5.11679 5.23632 5.44406 5.56320 5.69895 5.84861 5.90578 6.30934 7.04488 7.06511 7.36258 7.47440 7.85464 8.69167 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.006801 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.973536 B = 4115.990876 C = 4858.826466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.061 4.061 3 H 0.105 0.895 4 C 0.469 3.531 5 O -0.620 6.620 6 N -0.439 5.439 7 C -0.350 4.350 8 H 0.122 0.878 9 C -0.006 4.006 10 N -0.905 5.905 11 Si 0.997 3.003 12 H -0.268 1.268 13 H -0.290 1.290 14 H -0.258 1.258 15 C 0.155 3.845 16 C 0.503 3.497 17 O -0.554 6.554 18 O -0.523 6.523 19 C -0.036 4.036 20 C -0.147 4.147 21 C 0.082 3.918 22 N -0.509 5.509 23 C 0.086 3.914 24 C -0.174 4.174 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.272 0.728 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.410 0.590 32 H 0.133 0.867 33 H 0.176 0.824 34 H 0.183 0.817 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 0.402 4.580 6.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.082 4.082 3 H 0.123 0.877 4 C 0.259 3.741 5 O -0.507 6.507 6 N -0.157 5.157 7 C -0.477 4.477 8 H 0.139 0.861 9 C -0.207 4.207 10 N -0.544 5.544 11 Si 0.820 3.180 12 H -0.193 1.193 13 H -0.216 1.216 14 H -0.183 1.183 15 C 0.029 3.971 16 C 0.346 3.654 17 O -0.444 6.444 18 O -0.335 6.335 19 C -0.045 4.045 20 C -0.167 4.167 21 C -0.074 4.074 22 N -0.219 5.219 23 C -0.070 4.070 24 C -0.193 4.193 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.144 0.856 31 H 0.269 0.731 32 H 0.151 0.849 33 H 0.193 0.807 34 H 0.200 0.800 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.927 -0.381 5.355 7.287 hybrid contribution 0.873 1.042 -1.298 1.880 sum -4.053 0.661 4.057 5.773 Atomic orbital electron populations 1.21622 0.90087 1.02691 1.03634 1.20156 0.99018 1.00076 0.88919 0.87700 1.20595 0.81750 0.87108 0.84636 1.90499 1.61615 1.15447 1.83139 1.43607 1.56293 1.06747 1.09101 1.20100 1.31312 0.79923 1.16338 0.86076 1.26134 0.93513 1.04769 0.96318 1.69839 1.22107 1.38935 1.23517 0.84917 0.78632 0.76409 0.78004 1.19305 1.21567 1.18286 1.20554 0.87309 0.97849 0.91392 1.23846 0.91805 0.70969 0.78761 1.90531 1.66151 1.52721 1.34981 1.84458 1.31978 1.71019 1.46077 1.20170 0.95188 0.94701 0.94415 1.22143 1.01476 0.94973 0.98071 1.23060 0.93502 1.00771 0.90082 1.67666 1.12996 1.09821 1.31379 1.23117 0.97272 0.90267 0.96378 1.22320 0.98759 1.02590 0.95648 0.91055 0.92509 0.89733 0.91819 0.89549 0.85586 0.73069 0.84898 0.80716 0.80044 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 8.93 71.98 0.64 -2.98 16 2 C -0.06 -2.25 2.41 -12.28 -0.03 -2.28 16 3 H 0.10 3.87 5.68 -2.39 -0.01 3.86 16 4 C 0.47 21.75 6.40 87.66 0.56 22.31 16 5 O -0.62 -31.37 14.47 -3.07 -0.04 -31.41 16 6 N -0.44 -21.22 2.17 -639.59 -1.39 -22.61 16 7 C -0.35 -16.46 9.03 84.04 0.76 -15.70 16 8 H 0.12 5.14 5.93 -2.91 -0.02 5.12 16 9 C -0.01 -0.30 5.04 84.93 0.43 0.13 16 10 N -0.90 -45.45 8.93 21.67 0.19 -45.26 16 11 Si 1.00 37.10 29.58 68.60 2.03 39.13 16 12 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 13 H -0.29 -11.04 7.11 99.48 0.71 -10.33 16 14 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 15 C 0.15 7.30 5.11 85.63 0.44 7.74 16 16 C 0.50 24.69 6.45 71.24 0.46 25.15 16 17 O -0.55 -31.37 16.85 21.99 0.37 -31.00 16 18 O -0.52 -20.86 13.42 -51.50 -0.69 -21.55 16 19 C -0.04 -1.30 4.74 -19.67 -0.09 -1.40 16 20 C -0.15 -5.13 8.22 22.36 0.18 -4.95 16 21 C 0.08 2.58 11.18 84.68 0.95 3.53 16 22 N -0.51 -16.53 10.36 -195.84 -2.03 -18.56 16 23 C 0.09 2.56 11.18 84.68 0.95 3.51 16 24 C -0.17 -5.56 9.76 22.36 0.22 -5.34 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.06 1.70 7.64 -2.39 -0.02 1.68 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 29 H 0.09 3.83 7.65 -2.39 -0.02 3.81 16 30 H 0.13 5.94 6.27 -2.39 -0.01 5.92 16 31 H 0.41 12.64 9.10 -74.06 -0.67 11.96 16 32 H 0.13 4.74 6.86 -2.91 -0.02 4.72 16 33 H 0.18 4.39 8.06 -2.91 -0.02 4.37 16 34 H 0.18 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.15 4.14 8.01 -2.91 -0.02 4.12 16 Total: -1.00 -67.56 303.42 4.37 -63.19 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: 0.46 Total: 38.35 kcal Atomic # 6 Polarization: 24.27 SS G_CDS: 5.46 Total: 29.73 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -3.22 Total: -86.43 kcal Atomic # 8 Polarization: -83.60 SS G_CDS: -0.37 Total: -83.97 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Total: -67.56 4.37 -63.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.499 kcal (2) G-P(sol) polarization free energy of solvation -67.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds