Wall clock time and date at job start Tue Mar 31 2020 00:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48491 * 109.47220 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47213 * 300.00511 * 9 7 5 12 12 H 1.48499 * 109.47015 * 60.00212 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21528 * 119.99842 * 359.97438 * 14 13 3 16 16 C 1.48018 * 119.99804 * 180.02562 * 14 13 3 17 17 C 1.39853 * 120.46053 * 180.02562 * 16 14 13 18 18 C 1.38459 * 118.36263 * 179.97438 * 17 16 14 19 19 C 1.39334 * 119.18258 * 359.97438 * 18 17 16 20 20 C 1.48245 * 119.57244 * 179.97438 * 19 18 17 21 21 O 1.21404 * 119.99911 * 0.02562 * 20 19 18 22 22 O 1.34660 * 120.00169 * 179.97438 * 20 19 18 23 23 N 1.32745 * 120.85302 * 359.97438 * 19 18 17 24 24 C 1.31404 * 121.79397 * 359.72601 * 23 19 18 25 25 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 26 26 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 27 27 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47166 * 240.00331 * 2 1 3 29 29 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 30 30 H 0.97001 * 119.99410 * 354.82986 * 8 7 5 31 31 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 32 32 H 1.08006 * 120.82122 * 359.97438 * 17 16 14 33 33 H 1.07997 * 120.40486 * 179.97438 * 18 17 16 34 34 H 0.96700 * 117.00534 * 180.02562 * 22 20 19 35 35 H 1.08000 * 119.63355 * 180.26850 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9879 -1.2986 8 7 5.4073 0.6859 -1.3141 9 14 3.1041 0.7977 -2.8498 10 1 3.9633 0.2934 -3.9509 11 1 2.0024 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3368 2.6312 0.4576 16 6 0.0678 3.3182 2.6556 17 6 -1.1918 3.9086 2.7992 18 6 -1.5018 4.5118 4.0063 19 6 -0.5559 4.5099 5.0294 20 6 -0.8785 5.1537 6.3252 21 8 -1.9611 5.6778 6.4897 22 8 0.0290 5.1564 7.3201 23 7 0.6302 3.9389 4.8588 24 6 0.9599 3.3513 3.7307 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.9549 0.8550 -0.5315 31 1 2.2901 2.1167 1.9977 32 1 -1.9053 3.8944 1.9884 33 1 -2.4648 4.9781 4.1529 34 1 -0.2269 5.5881 8.1466 35 1 1.9332 2.8938 3.6314 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589463773.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:04 Heat of formation + Delta-G solvation = -92.287345 kcal Electronic energy + Delta-G solvation = -20966.008707 eV Core-core repulsion = 17543.129480 eV Total energy + Delta-G solvation = -3422.879227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13607 -40.03041 -38.80964 -36.46611 -35.48461 -32.97130 -32.81222 -32.12484 -31.05888 -27.55010 -25.96984 -23.91787 -22.72702 -22.28650 -20.90695 -19.79085 -18.78059 -18.32172 -17.83457 -16.86271 -16.69997 -16.12148 -15.46228 -15.19915 -14.94336 -14.34910 -13.98317 -13.72460 -13.51293 -13.29926 -12.96546 -12.63804 -12.53566 -12.37081 -11.90580 -11.83516 -11.25349 -11.00751 -10.79984 -10.51968 -10.24978 -10.18108 -9.97628 -9.70163 -9.55997 -9.43354 -9.13765 -8.42324 -8.28894 -6.65610 -4.30651 -0.07222 0.87580 1.92792 2.48815 3.05183 3.32738 3.39539 3.50613 3.60245 3.72777 3.87774 4.35307 4.49674 4.53215 4.70377 4.86653 5.01109 5.09357 5.28222 5.66429 5.78462 5.97582 6.00814 6.04037 6.10385 6.17285 6.57776 6.70213 6.81061 6.92305 7.18825 7.23914 7.26608 7.50491 7.60201 8.14144 8.24190 8.53383 8.75241 9.38925 10.75488 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032717 B = 0.003913 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.607468 B = 7153.088968 C = 7645.632954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.247 3.753 4 H 0.045 0.955 5 C -0.620 4.620 6 H 0.063 0.937 7 C 0.041 3.959 8 N -0.895 5.895 9 Si 1.039 2.961 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.280 1.280 13 N -0.688 5.688 14 C 0.543 3.457 15 O -0.536 6.536 16 C -0.138 4.138 17 C -0.030 4.030 18 C -0.110 4.110 19 C 0.095 3.905 20 C 0.545 3.455 21 O -0.506 6.506 22 O -0.490 6.490 23 N -0.436 5.436 24 C 0.128 3.872 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.270 0.730 31 H 0.394 0.606 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.413 0.587 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.328 5.877 12.406 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.144 3.856 4 H 0.063 0.937 5 C -0.658 4.658 6 H 0.081 0.919 7 C -0.166 4.166 8 N -0.528 5.528 9 Si 0.867 3.133 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.206 1.206 13 N -0.335 5.335 14 C 0.327 3.673 15 O -0.415 6.415 16 C -0.144 4.144 17 C -0.056 4.056 18 C -0.131 4.131 19 C -0.041 4.041 20 C 0.387 3.613 21 O -0.394 6.394 22 O -0.300 6.300 23 N -0.147 5.147 24 C -0.034 4.034 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.272 0.728 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.363 5.299 10.542 16.381 hybrid contribution -0.359 0.833 1.949 2.149 sum -11.723 6.131 12.491 18.194 Atomic orbital electron populations 1.21896 0.97368 0.99094 1.01858 1.22378 0.93805 0.99560 1.02159 1.19159 0.96103 0.88668 0.81687 0.93725 1.22072 0.89449 1.49960 1.04344 0.91895 1.25677 0.97531 0.92265 1.01163 1.70878 1.07053 1.40525 1.34351 0.84126 0.75533 0.77747 0.75914 1.20842 1.19445 1.20560 1.46271 1.13909 1.54884 1.18483 1.17969 0.83318 0.79646 0.86347 1.90760 1.50861 1.59794 1.40077 1.21698 0.96070 0.99909 0.96699 1.21801 0.95461 0.91397 0.96956 1.22082 1.00654 0.98255 0.92080 1.20093 0.91993 0.99786 0.92218 1.20502 0.81186 0.75941 0.83623 1.90906 1.23958 1.42791 1.81739 1.84693 1.46110 1.73611 1.25589 1.67652 1.16666 1.06287 1.24053 1.23141 0.99450 0.93928 0.86853 0.93457 0.92916 0.94881 0.91017 0.92880 0.91995 0.77208 0.82188 0.82604 0.72823 0.81089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.53 37.15 0.32 -2.43 16 2 C -0.14 -2.95 5.28 -26.73 -0.14 -3.09 16 3 C 0.25 5.51 1.82 -69.08 -0.13 5.39 16 4 H 0.05 1.09 6.25 -51.93 -0.32 0.76 16 5 C -0.62 -15.92 9.01 -34.44 -0.31 -16.23 16 6 H 0.06 1.68 7.96 -52.49 -0.42 1.26 16 7 C 0.04 1.10 5.32 -17.82 -0.09 1.01 16 8 N -0.90 -25.84 13.70 55.43 0.76 -25.08 16 9 Si 1.04 24.09 26.27 -169.99 -4.47 19.63 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -5.77 5.67 56.52 0.32 -5.45 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.69 -12.69 4.98 -55.82 -0.28 -12.97 16 14 C 0.54 9.43 6.38 -12.25 -0.08 9.35 16 15 O -0.54 -10.70 13.55 5.34 0.07 -10.63 16 16 C -0.14 -1.90 5.90 -104.72 -0.62 -2.52 16 17 C -0.03 -0.35 9.71 -38.90 -0.38 -0.73 16 18 C -0.11 -1.19 9.62 -39.09 -0.38 -1.57 16 19 C 0.10 1.15 6.75 -82.95 -0.56 0.59 16 20 C 0.55 6.08 8.33 34.84 0.29 6.37 16 21 O -0.51 -6.34 17.10 -19.19 -0.33 -6.67 16 22 O -0.49 -4.38 13.24 -40.38 -0.53 -4.91 16 23 N -0.44 -5.68 10.10 -9.49 -0.10 -5.77 16 24 C 0.13 1.61 10.71 -17.17 -0.18 1.43 16 25 H 0.05 0.88 5.63 -51.93 -0.29 0.59 16 26 H 0.05 1.04 7.88 -51.93 -0.41 0.63 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.59 4.74 -51.93 -0.25 1.34 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.27 7.70 8.73 -40.82 -0.36 7.35 16 31 H 0.39 6.34 6.59 -40.82 -0.27 6.07 16 32 H 0.16 1.74 7.73 -52.48 -0.41 1.33 16 33 H 0.16 1.38 7.63 -52.49 -0.40 0.97 16 34 H 0.41 1.47 9.11 45.56 0.42 1.89 16 35 H 0.17 1.87 6.41 -52.49 -0.34 1.53 16 LS Contribution 301.08 15.07 4.54 4.54 Total: -1.00 -32.00 301.08 -5.36 -37.36 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -2.76 Total: 6.95 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.26 Total: -2.44 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.39 Total: -43.83 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.79 Total: -22.20 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -4.47 Total: 19.63 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.00 -5.36 -37.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463773.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.926 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds