Wall clock time and date at job start Tue Mar 31 2020 00:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48491 * 109.47220 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47213 * 300.00511 * 9 7 5 12 12 H 1.48499 * 109.47015 * 60.00212 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21528 * 119.99842 * 359.97438 * 14 13 3 16 16 C 1.48018 * 119.99804 * 180.02562 * 14 13 3 17 17 C 1.39853 * 120.46053 * 180.02562 * 16 14 13 18 18 C 1.38459 * 118.36263 * 179.97438 * 17 16 14 19 19 C 1.39334 * 119.18258 * 359.97438 * 18 17 16 20 20 C 1.48245 * 119.57244 * 179.97438 * 19 18 17 21 21 O 1.21404 * 119.99911 * 0.02562 * 20 19 18 22 22 O 1.34660 * 120.00169 * 179.97438 * 20 19 18 23 23 N 1.32745 * 120.85302 * 359.97438 * 19 18 17 24 24 C 1.31404 * 121.79397 * 359.72601 * 23 19 18 25 25 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 26 26 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 27 27 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47166 * 240.00331 * 2 1 3 29 29 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 30 30 H 0.97001 * 119.99410 * 354.82986 * 8 7 5 31 31 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 32 32 H 1.08006 * 120.82122 * 359.97438 * 17 16 14 33 33 H 1.07997 * 120.40486 * 179.97438 * 18 17 16 34 34 H 0.96700 * 117.00534 * 180.02562 * 22 20 19 35 35 H 1.08000 * 119.63355 * 180.26850 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9879 -1.2986 8 7 5.4073 0.6859 -1.3141 9 14 3.1041 0.7977 -2.8498 10 1 3.9633 0.2934 -3.9509 11 1 2.0024 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3368 2.6312 0.4576 16 6 0.0678 3.3182 2.6556 17 6 -1.1918 3.9086 2.7992 18 6 -1.5018 4.5118 4.0063 19 6 -0.5559 4.5099 5.0294 20 6 -0.8785 5.1537 6.3252 21 8 -1.9611 5.6778 6.4897 22 8 0.0290 5.1564 7.3201 23 7 0.6302 3.9389 4.8588 24 6 0.9599 3.3513 3.7307 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.9549 0.8550 -0.5315 31 1 2.2901 2.1167 1.9977 32 1 -1.9053 3.8944 1.9884 33 1 -2.4648 4.9781 4.1529 34 1 -0.2269 5.5881 8.1466 35 1 1.9332 2.8938 3.6314 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589463773.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:03 Heat of formation + Delta-G solvation = -116.370813 kcal Electronic energy + Delta-G solvation = -20967.053044 eV Core-core repulsion = 17543.129480 eV Total energy + Delta-G solvation = -3423.923564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.11145 -41.09745 -40.03018 -37.25860 -37.14398 -34.58991 -33.98204 -33.57936 -32.33969 -29.25124 -27.10274 -24.88967 -24.32966 -23.52539 -22.24511 -21.35677 -20.11483 -19.53184 -18.86446 -18.30885 -17.80125 -17.02654 -16.91563 -16.41256 -16.13020 -15.68025 -15.21529 -14.95104 -14.76894 -14.50089 -14.38294 -14.35422 -13.99182 -13.72000 -13.58304 -12.68295 -12.66911 -12.48277 -12.28416 -12.13494 -11.78181 -11.46063 -11.27755 -11.20105 -11.07504 -10.71011 -10.57323 -10.46829 -9.88477 -8.78358 -6.43540 -1.05768 -0.04852 0.99212 1.47848 1.52738 1.70446 1.71118 1.88366 2.22382 2.43749 2.64221 2.96697 3.03178 3.49767 3.61907 3.75526 3.81655 4.05087 4.33269 4.41921 4.43364 4.53868 4.73912 4.82594 4.88647 5.13108 5.17091 5.20960 5.29658 5.35013 5.55539 5.57088 5.67631 6.02161 6.35022 6.52977 6.70023 6.88239 7.20745 7.34433 8.61859 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032717 B = 0.003913 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.607468 B = 7153.088968 C = 7645.632954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.029 0.971 5 C -0.614 4.614 6 H 0.042 0.958 7 C -0.004 4.004 8 N -0.929 5.929 9 Si 1.069 2.931 10 H -0.286 1.286 11 H -0.241 1.241 12 H -0.273 1.273 13 N -0.692 5.692 14 C 0.549 3.451 15 O -0.562 6.562 16 C -0.152 4.152 17 C -0.021 4.021 18 C -0.100 4.100 19 C 0.090 3.910 20 C 0.552 3.448 21 O -0.521 6.521 22 O -0.490 6.490 23 N -0.449 5.449 24 C 0.132 3.868 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.258 0.742 31 H 0.404 0.596 32 H 0.171 0.829 33 H 0.179 0.821 34 H 0.436 0.564 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.340 6.211 13.421 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.147 3.853 4 H 0.047 0.953 5 C -0.652 4.652 6 H 0.061 0.939 7 C -0.205 4.205 8 N -0.564 5.564 9 Si 0.891 3.109 10 H -0.212 1.212 11 H -0.166 1.166 12 H -0.198 1.198 13 N -0.340 5.340 14 C 0.335 3.665 15 O -0.443 6.443 16 C -0.157 4.157 17 C -0.047 4.047 18 C -0.119 4.119 19 C -0.047 4.047 20 C 0.394 3.606 21 O -0.411 6.411 22 O -0.303 6.303 23 N -0.160 5.160 24 C -0.029 4.029 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.240 0.760 32 H 0.188 0.812 33 H 0.197 0.803 34 H 0.299 0.701 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.383 5.650 11.626 18.606 hybrid contribution 0.265 0.825 1.800 1.998 sum -13.118 6.475 13.426 19.856 Atomic orbital electron populations 1.21785 0.95439 1.00516 1.01511 1.22271 0.95446 0.98147 1.01792 1.18839 0.93615 0.89837 0.83000 0.95350 1.22285 0.91422 1.48199 1.03315 0.93932 1.26787 0.97659 0.92083 1.03964 1.70982 1.08126 1.43231 1.34071 0.83758 0.75260 0.78747 0.73106 1.21181 1.16559 1.19823 1.46062 1.14988 1.55359 1.17620 1.18314 0.82266 0.78719 0.87203 1.90741 1.51449 1.60701 1.41410 1.21360 0.97448 1.01629 0.95310 1.21957 0.94734 0.90390 0.97620 1.22267 1.01242 0.97389 0.91052 1.20449 0.91896 0.99226 0.93087 1.20304 0.81069 0.75519 0.83705 1.90907 1.24575 1.43530 1.82050 1.84645 1.45568 1.73604 1.26461 1.67692 1.17358 1.06930 1.24049 1.23257 0.99668 0.93539 0.86464 0.93269 0.93795 0.92536 0.92127 0.92531 0.93225 0.76023 0.81151 0.80326 0.70135 0.80063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 8.53 71.98 0.61 -4.23 16 2 C -0.14 -5.61 5.28 30.59 0.16 -5.45 16 3 C 0.25 11.10 1.82 44.25 0.08 11.18 16 4 H 0.03 1.37 6.25 -2.39 -0.01 1.36 16 5 C -0.61 -31.84 9.01 25.60 0.23 -31.61 16 6 H 0.04 2.33 7.96 -2.91 -0.02 2.30 16 7 C 0.00 -0.22 5.32 84.66 0.45 0.23 16 8 N -0.93 -54.81 13.70 21.45 0.29 -54.51 16 9 Si 1.07 48.31 26.27 68.60 1.80 50.11 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.24 -9.79 5.67 99.48 0.56 -9.22 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 N -0.69 -25.04 4.98 -448.81 -2.24 -27.27 16 14 C 0.55 18.40 6.38 86.84 0.55 18.95 16 15 O -0.56 -21.76 13.55 -3.80 -0.05 -21.82 16 16 C -0.15 -3.94 5.90 -19.93 -0.12 -4.06 16 17 C -0.02 -0.44 9.71 22.71 0.22 -0.22 16 18 C -0.10 -1.88 9.62 22.59 0.22 -1.66 16 19 C 0.09 1.96 6.75 41.93 0.28 2.24 16 20 C 0.55 11.00 8.33 70.48 0.59 11.58 16 21 O -0.52 -11.80 17.10 20.15 0.34 -11.45 16 22 O -0.49 -7.55 13.24 -55.69 -0.74 -8.28 16 23 N -0.45 -10.87 10.10 -183.94 -1.86 -12.72 16 24 C 0.13 3.14 10.71 85.12 0.91 4.05 16 25 H 0.05 1.73 5.63 -2.39 -0.01 1.71 16 26 H 0.04 1.64 7.88 -2.38 -0.02 1.62 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 2.59 4.74 -2.39 -0.01 2.58 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.26 15.27 8.73 -92.71 -0.81 14.46 16 31 H 0.40 12.80 6.59 -92.71 -0.61 12.19 16 32 H 0.17 3.29 7.73 -2.91 -0.02 3.27 16 33 H 0.18 2.56 7.63 -2.91 -0.02 2.54 16 34 H 0.44 1.95 9.11 -74.06 -0.67 1.28 16 35 H 0.18 3.76 6.41 -2.91 -0.02 3.74 16 Total: -1.00 -68.15 301.08 1.45 -66.70 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.30 Total: 18.24 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 4.19 Total: 1.01 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -3.80 Total: -94.51 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -0.44 Total: -41.55 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.80 Total: 50.11 kcal Total: -68.15 1.45 -66.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463773.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.669 kcal (2) G-P(sol) polarization free energy of solvation -68.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds