Wall clock time and date at job start Tue Mar 31 2020 00:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47112 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47000 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46939 * 299.99464 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21533 * 119.99942 * 359.97438 * 14 13 3 16 16 C 1.48018 * 119.99847 * 179.97438 * 14 13 3 17 17 C 1.39866 * 120.45841 * 179.97438 * 16 14 13 18 18 C 1.38451 * 118.36061 * 179.97438 * 17 16 14 19 19 C 1.39340 * 119.18538 * 0.02562 * 18 17 16 20 20 C 1.48245 * 119.57280 * 179.97438 * 19 18 17 21 21 O 1.21409 * 120.00014 * 0.02562 * 20 19 18 22 22 O 1.34664 * 119.99998 * 179.97438 * 20 19 18 23 23 N 1.32740 * 120.84810 * 0.02562 * 19 18 17 24 24 C 1.31402 * 121.80003 * 359.65737 * 23 19 18 25 25 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 26 26 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 27 27 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 29 29 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 30 30 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 32 32 H 1.08001 * 120.81533 * 0.02607 * 17 16 14 33 33 H 1.07999 * 120.41065 * 179.97438 * 18 17 16 34 34 H 0.96697 * 117.00036 * 180.02562 * 22 20 19 35 35 H 1.08008 * 119.63745 * 180.30742 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1453 0.2344 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3412 2.6318 -0.4326 16 6 0.0438 3.3265 -2.6317 17 6 -1.2172 3.9174 -2.7620 18 6 -1.5377 4.5253 -3.9639 19 6 -0.6008 4.5274 -4.9953 20 6 -0.9351 5.1754 -6.2861 21 8 -2.0192 5.7000 -6.4391 22 8 -0.0359 5.1829 -7.2885 23 7 0.5868 3.9559 -4.8373 24 6 0.9309 3.3743 -3.7103 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0608 2.9500 31 1 2.2720 2.1231 -1.9978 32 1 -1.9231 3.9006 -1.9448 33 1 -2.5023 4.9914 -4.1007 34 1 -0.2991 5.6178 -8.1111 35 1 1.9084 2.9243 -3.6182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589463774.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:06 Heat of formation + Delta-G solvation = -92.917006 kcal Electronic energy + Delta-G solvation = -20893.828743 eV Core-core repulsion = 17470.922212 eV Total energy + Delta-G solvation = -3422.906531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06051 -39.93644 -38.64514 -36.42162 -35.26742 -32.88087 -32.75375 -31.87131 -30.70730 -27.32839 -25.87604 -23.84823 -23.19821 -22.31468 -20.66174 -19.58231 -18.69559 -18.12284 -17.59429 -16.62253 -16.07210 -15.99859 -15.29132 -15.09816 -14.82715 -14.42989 -14.04335 -13.78671 -13.46094 -13.20335 -12.85033 -12.63435 -12.17502 -11.85061 -11.62388 -11.32103 -11.20352 -11.07619 -10.88774 -10.42637 -10.29152 -10.15800 -10.05762 -9.72794 -9.47800 -9.29283 -9.14853 -8.58160 -8.01371 -6.19533 -4.29802 0.00912 0.95133 1.99420 2.54060 3.16515 3.22170 3.27936 3.28585 3.71947 3.85064 3.94859 4.29537 4.58162 4.61220 4.77843 4.95210 5.11812 5.15575 5.35257 5.74915 5.88559 6.08420 6.18279 6.31033 6.36568 6.56108 6.94446 7.08631 7.20212 7.28563 7.30197 7.50969 7.61427 7.65484 7.79023 8.07990 8.44704 8.64176 8.88523 9.37466 10.85721 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027403 B = 0.003860 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.546699 B = 7252.534460 C = 7976.758820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.694 5.694 14 C 0.542 3.458 15 O -0.534 6.534 16 C -0.136 4.136 17 C -0.031 4.031 18 C -0.110 4.110 19 C 0.093 3.907 20 C 0.546 3.454 21 O -0.507 6.507 22 O -0.491 6.491 23 N -0.437 5.437 24 C 0.126 3.874 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.101 0.899 30 H 0.266 0.734 31 H 0.389 0.611 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.413 0.587 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 6.189 -13.575 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.342 5.342 14 C 0.325 3.675 15 O -0.413 6.413 16 C -0.141 4.141 17 C -0.058 4.058 18 C -0.131 4.131 19 C -0.043 4.043 20 C 0.388 3.612 21 O -0.395 6.395 22 O -0.300 6.300 23 N -0.147 5.147 24 C -0.035 4.035 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.223 0.777 32 H 0.178 0.822 33 H 0.173 0.827 34 H 0.271 0.729 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.295 6.026 -13.084 15.720 hybrid contribution 0.584 0.213 -0.137 0.636 sum -5.711 6.239 -13.221 15.695 Atomic orbital electron populations 1.21854 0.98333 0.98264 1.01141 1.21954 0.92616 0.99582 1.02573 1.18896 0.94493 0.89283 0.80441 0.92930 1.21166 0.90457 1.39541 1.06537 0.91969 1.24874 0.98722 0.94635 0.95288 1.69879 1.35340 1.37285 1.09316 0.86494 0.84642 0.78386 0.77527 1.20131 1.21108 1.20075 1.46530 1.13930 1.54820 1.18912 1.17921 0.83474 0.79846 0.86237 1.90772 1.51357 1.59746 1.39406 1.21787 0.95939 0.99498 0.96896 1.21808 0.95509 0.91437 0.97023 1.22075 1.00618 0.98265 0.92099 1.20065 0.92130 0.99958 0.92184 1.20522 0.81196 0.75963 0.83544 1.90905 1.23738 1.42917 1.81924 1.84695 1.46356 1.73513 1.25473 1.67635 1.16352 1.06387 1.24359 1.23140 0.99533 0.94062 0.86803 0.93045 0.94443 0.95657 0.94821 0.88050 0.92391 0.77729 0.82232 0.82697 0.72893 0.81049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.61 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.37 2.24 -69.08 -0.15 6.21 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.47 8.73 -34.44 -0.30 -13.77 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.75 11.30 55.43 0.63 -23.12 16 9 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.69 -13.17 4.98 -55.82 -0.28 -13.44 16 14 C 0.54 9.84 6.35 -12.25 -0.08 9.76 16 15 O -0.53 -11.36 13.54 5.34 0.07 -11.29 16 16 C -0.14 -1.94 5.90 -104.72 -0.62 -2.56 16 17 C -0.03 -0.39 9.71 -38.89 -0.38 -0.77 16 18 C -0.11 -1.24 9.62 -39.09 -0.38 -1.62 16 19 C 0.09 1.15 6.75 -82.95 -0.56 0.59 16 20 C 0.55 6.22 8.33 34.84 0.29 6.51 16 21 O -0.51 -6.49 17.10 -19.20 -0.33 -6.82 16 22 O -0.49 -4.46 13.24 -40.40 -0.53 -4.99 16 23 N -0.44 -5.78 10.10 -9.49 -0.10 -5.87 16 24 C 0.13 1.62 10.71 -17.18 -0.18 1.44 16 25 H 0.05 1.15 7.84 -51.93 -0.41 0.75 16 26 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.39 6.25 6.60 -40.82 -0.27 5.98 16 32 H 0.16 1.86 7.73 -52.49 -0.41 1.45 16 33 H 0.16 1.44 7.63 -52.49 -0.40 1.04 16 34 H 0.41 1.54 9.11 45.56 0.42 1.95 16 35 H 0.17 1.87 6.42 -52.48 -0.34 1.54 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -30.95 305.52 -6.02 -36.98 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -2.79 Total: 7.34 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.28 Total: 1.76 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.25 Total: -42.44 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.79 Total: -23.10 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.95 -6.02 -36.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463774.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.941 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds