Wall clock time and date at job start Tue Mar 31 2020 00:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47112 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47000 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46939 * 299.99464 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21533 * 119.99942 * 359.97438 * 14 13 3 16 16 C 1.48018 * 119.99847 * 179.97438 * 14 13 3 17 17 C 1.39866 * 120.45841 * 179.97438 * 16 14 13 18 18 C 1.38451 * 118.36061 * 179.97438 * 17 16 14 19 19 C 1.39340 * 119.18538 * 0.02562 * 18 17 16 20 20 C 1.48245 * 119.57280 * 179.97438 * 19 18 17 21 21 O 1.21409 * 120.00014 * 0.02562 * 20 19 18 22 22 O 1.34664 * 119.99998 * 179.97438 * 20 19 18 23 23 N 1.32740 * 120.84810 * 0.02562 * 19 18 17 24 24 C 1.31402 * 121.80003 * 359.65737 * 23 19 18 25 25 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 26 26 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 27 27 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 29 29 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 30 30 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 32 32 H 1.08001 * 120.81533 * 0.02607 * 17 16 14 33 33 H 1.07999 * 120.41065 * 179.97438 * 18 17 16 34 34 H 0.96697 * 117.00036 * 180.02562 * 22 20 19 35 35 H 1.08008 * 119.63745 * 180.30742 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1453 0.2344 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3412 2.6318 -0.4326 16 6 0.0438 3.3265 -2.6317 17 6 -1.2172 3.9174 -2.7620 18 6 -1.5377 4.5253 -3.9639 19 6 -0.6008 4.5274 -4.9953 20 6 -0.9351 5.1754 -6.2861 21 8 -2.0192 5.7000 -6.4391 22 8 -0.0359 5.1829 -7.2885 23 7 0.5868 3.9559 -4.8373 24 6 0.9309 3.3743 -3.7103 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0608 2.9500 31 1 2.2720 2.1231 -1.9978 32 1 -1.9231 3.9006 -1.9448 33 1 -2.5023 4.9914 -4.1007 34 1 -0.2991 5.6178 -8.1111 35 1 1.9084 2.9243 -3.6182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589463774.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:05 Heat of formation + Delta-G solvation = -115.140465 kcal Electronic energy + Delta-G solvation = -20894.792424 eV Core-core repulsion = 17470.922212 eV Total energy + Delta-G solvation = -3423.870212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.06245 -41.02959 -39.94665 -37.22946 -37.00460 -34.48932 -33.86847 -33.31673 -32.19350 -29.07387 -27.07486 -25.03446 -24.76732 -23.43336 -22.10256 -21.25460 -19.72806 -19.32241 -18.66521 -17.79821 -17.66973 -16.96959 -16.90076 -16.34929 -16.22698 -15.88507 -15.26732 -14.88847 -14.62679 -14.54305 -14.32010 -13.84159 -13.70631 -13.46766 -13.14206 -12.90904 -12.65174 -12.63524 -12.18366 -12.10617 -12.06106 -11.58359 -11.23067 -11.16738 -11.05726 -10.66924 -10.52937 -10.49919 -9.69923 -8.14495 -6.31506 -1.01496 -0.01348 1.03423 1.48534 1.49304 1.56876 1.73578 1.95522 2.27073 2.50675 2.69521 3.01433 3.15807 3.55367 3.66656 3.82714 3.86562 4.08673 4.46406 4.52283 4.59097 4.73937 4.80704 4.88463 5.08487 5.21267 5.28389 5.37757 5.43925 5.52158 5.60942 5.79871 5.90141 6.17565 6.38670 6.74800 6.85784 6.91115 7.30621 7.46043 8.90519 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027403 B = 0.003860 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.546699 B = 7252.534460 C = 7976.758820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 C 0.278 3.722 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.074 0.926 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.692 5.692 14 C 0.545 3.455 15 O -0.570 6.570 16 C -0.151 4.151 17 C -0.025 4.025 18 C -0.100 4.100 19 C 0.089 3.911 20 C 0.552 3.448 21 O -0.523 6.523 22 O -0.489 6.489 23 N -0.447 5.447 24 C 0.134 3.866 25 H 0.028 0.972 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.405 0.595 32 H 0.166 0.834 33 H 0.178 0.822 34 H 0.436 0.564 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 6.776 -15.786 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.023 0.977 5 C -0.588 4.588 6 H 0.093 0.907 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.341 5.341 14 C 0.331 3.669 15 O -0.451 6.451 16 C -0.156 4.156 17 C -0.051 4.051 18 C -0.120 4.120 19 C -0.047 4.047 20 C 0.395 3.605 21 O -0.412 6.412 22 O -0.302 6.302 23 N -0.158 5.158 24 C -0.027 4.027 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.183 0.817 33 H 0.195 0.805 34 H 0.298 0.702 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.892 6.634 -15.367 17.744 hybrid contribution 0.405 0.100 0.459 0.620 sum -5.487 6.734 -14.908 17.253 Atomic orbital electron populations 1.21699 0.96945 0.99279 1.00340 1.21807 0.93785 0.99015 1.01558 1.18454 0.93789 0.89272 0.80947 0.97685 1.21552 0.91341 1.39110 1.06821 0.90743 1.25710 1.03040 0.94373 0.95055 1.70034 1.37063 1.38235 1.09837 0.85470 0.79408 0.78409 0.77492 1.19733 1.21444 1.18920 1.46232 1.14895 1.55008 1.17994 1.18370 0.82494 0.78942 0.87119 1.90754 1.52256 1.60989 1.41145 1.21402 0.97381 1.01326 0.95473 1.21929 0.94840 0.90657 0.97696 1.22235 1.01273 0.97462 0.91043 1.20424 0.91996 0.99268 0.93017 1.20292 0.81075 0.75527 0.83623 1.90907 1.24396 1.43651 1.82237 1.84643 1.45746 1.73493 1.26287 1.67700 1.16900 1.06945 1.24230 1.23314 0.99796 0.93441 0.86160 0.95263 0.93752 0.93621 0.93841 0.90853 0.92604 0.75911 0.81692 0.80505 0.70154 0.79457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.51 71.98 0.61 -4.72 16 2 C -0.12 -5.73 5.45 30.60 0.17 -5.56 16 3 C 0.28 13.41 2.24 44.25 0.10 13.51 16 4 H 0.01 0.30 7.58 -2.39 -0.02 0.28 16 5 C -0.55 -27.58 8.73 25.60 0.22 -27.36 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.97 5.29 84.65 0.45 1.41 16 8 N -0.91 -50.47 11.30 21.45 0.24 -50.23 16 9 Si 0.97 40.60 29.54 68.60 2.03 42.62 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 13 N -0.69 -26.17 4.98 -448.81 -2.23 -28.40 16 14 C 0.54 19.76 6.35 86.84 0.55 20.31 16 15 O -0.57 -24.76 13.54 -3.82 -0.05 -24.82 16 16 C -0.15 -4.12 5.90 -19.93 -0.12 -4.24 16 17 C -0.02 -0.58 9.71 22.72 0.22 -0.36 16 18 C -0.10 -2.02 9.62 22.59 0.22 -1.80 16 19 C 0.09 2.00 6.75 41.93 0.28 2.28 16 20 C 0.55 11.18 8.33 70.48 0.59 11.77 16 21 O -0.52 -12.09 17.10 20.13 0.34 -11.74 16 22 O -0.49 -7.50 13.24 -55.73 -0.74 -8.24 16 23 N -0.45 -10.81 10.10 -183.94 -1.86 -12.67 16 24 C 0.13 3.20 10.71 85.12 0.91 4.11 16 25 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 26 H 0.04 1.80 5.64 -2.39 -0.01 1.78 16 27 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 30 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.40 12.57 6.60 -92.71 -0.61 11.96 16 32 H 0.17 3.66 7.73 -2.91 -0.02 3.64 16 33 H 0.18 2.78 7.63 -2.91 -0.02 2.76 16 34 H 0.44 1.94 9.11 -74.06 -0.67 1.26 16 35 H 0.19 3.70 6.42 -2.91 -0.02 3.68 16 Total: -1.00 -66.98 305.52 1.81 -65.17 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -0.13 Total: 18.95 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 4.20 Total: 9.35 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -3.85 Total: -91.29 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.45 Total: -44.80 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Total: -66.98 1.81 -65.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463774.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.973 kcal (2) G-P(sol) polarization free energy of solvation -66.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds