Wall clock time and date at job start Tue Mar 31 2020 01:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47251 * 2 1 4 4 C 1.50700 * 109.47096 * 239.99984 * 2 1 3 5 5 H 1.08006 * 119.99719 * 240.00126 * 4 2 1 6 6 C 1.37867 * 120.00383 * 60.00029 * 4 2 1 7 7 N 1.31519 * 119.99956 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00264 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46808 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47112 * 119.99989 * 8 6 4 11 11 H 1.48500 * 109.46804 * 240.00240 * 8 6 4 12 12 C 1.50698 * 109.46907 * 119.99881 * 2 1 3 13 13 O 1.21276 * 120.00098 * 119.99977 * 12 2 1 14 14 N 1.34779 * 120.00093 * 299.99650 * 12 2 1 15 15 C 1.39407 * 120.00133 * 174.91908 * 14 12 2 16 16 C 1.39031 * 119.69490 * 185.04278 * 15 14 12 17 17 C 1.38361 * 119.09993 * 179.97438 * 16 15 14 18 18 C 1.38837 * 118.49357 * 0.02562 * 17 16 15 19 19 C 1.38070 * 119.31392 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.57670 * 180.02562 * 19 18 17 21 21 C 1.50702 * 109.47155 * 124.99637 * 20 19 18 22 22 O 1.20820 * 120.00207 * 359.97438 * 21 20 19 23 23 O 1.34237 * 119.99523 * 179.97438 * 21 20 19 24 24 N 1.31936 * 120.84701 * 359.71779 * 19 18 17 25 25 H 1.09000 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46556 * 60.00175 * 1 2 3 27 27 H 1.08995 * 109.46770 * 300.00419 * 1 2 3 28 28 H 0.97003 * 119.99760 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99693 * 354.92321 * 14 12 2 30 30 H 1.08004 * 120.45197 * 359.97438 * 16 15 14 31 31 H 1.08003 * 120.75086 * 180.02562 * 17 16 15 32 32 H 1.08003 * 120.34060 * 180.02562 * 18 17 16 33 33 H 1.09003 * 109.46928 * 244.99558 * 20 19 18 34 34 H 1.08996 * 109.47486 * 4.99192 * 20 19 18 35 35 H 0.96694 * 116.99527 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1661 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.0816 -0.9652 3.5909 16 6 1.6532 -0.5416 4.8439 17 6 2.0320 -1.2611 5.9633 18 6 2.8301 -2.3839 5.7902 19 6 3.2188 -2.7470 4.5161 20 6 4.0846 -3.9650 4.3213 21 6 3.4186 -4.9044 3.3492 22 8 2.3504 -4.6149 2.8647 23 8 4.0124 -6.0629 3.0217 24 7 2.8370 -2.0448 3.4664 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 0.5139 0.8899 28 1 0.7097 1.1617 -3.4845 29 1 1.2115 0.5793 2.5449 30 1 1.0330 0.3372 4.9421 31 1 1.7141 -0.9562 6.9494 32 1 3.1430 -2.9677 6.6433 33 1 5.0546 -3.6619 3.9271 34 1 4.2226 -4.4694 5.2776 35 1 3.5471 -6.6325 2.3939 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:28 Heat of formation + Delta-G solvation = -80.642453 kcal Electronic energy + Delta-G solvation = -21401.783840 eV Core-core repulsion = 17979.409574 eV Total energy + Delta-G solvation = -3422.374266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.63539 -39.73569 -38.37747 -35.90510 -34.51977 -33.72907 -32.72815 -31.43414 -30.20955 -28.15843 -25.13754 -23.98793 -23.22037 -21.92133 -21.05245 -19.43263 -17.87909 -17.33918 -16.59878 -16.18860 -16.09401 -15.96723 -15.56242 -14.96483 -14.57900 -14.36061 -13.93883 -13.48941 -13.04961 -12.82821 -12.74762 -12.52883 -12.33492 -11.95333 -11.57057 -11.24631 -11.01078 -10.74868 -10.66802 -10.44131 -10.29631 -10.07304 -9.95679 -9.57209 -9.36455 -8.96645 -8.44956 -8.16684 -7.88409 -6.03001 -4.05707 1.21049 1.52685 2.49433 3.14235 3.33546 3.40406 3.44012 3.52968 3.68122 4.22794 4.30791 4.48727 4.70492 5.07121 5.17420 5.20451 5.30794 5.36144 5.41607 5.46991 5.78292 5.92749 6.22963 6.25224 6.53447 6.60554 6.70727 6.81774 6.90514 7.15603 7.45089 7.68921 7.84341 8.04010 8.12681 8.25583 8.54312 9.03738 9.22626 9.59955 11.04832 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.005393 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.614536 B = 5191.065782 C = 6441.100447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.032 3.968 3 H 0.054 0.946 4 C -0.499 4.499 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.503 3.497 13 O -0.467 6.467 14 N -0.671 5.671 15 C 0.381 3.619 16 C -0.219 4.219 17 C -0.048 4.048 18 C -0.213 4.213 19 C 0.160 3.840 20 C -0.056 4.056 21 C 0.475 3.525 22 O -0.478 6.478 23 O -0.526 6.526 24 N -0.452 5.452 25 H 0.032 0.968 26 H 0.095 0.905 27 H 0.012 0.988 28 H 0.260 0.740 29 H 0.412 0.588 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 -4.933 17.949 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.072 0.928 4 C -0.537 4.537 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.292 3.708 13 O -0.334 6.334 14 N -0.317 5.317 15 C 0.148 3.852 16 C -0.243 4.243 17 C -0.074 4.074 18 C -0.235 4.235 19 C 0.019 3.981 20 C -0.094 4.094 21 C 0.315 3.685 22 O -0.362 6.362 23 O -0.339 6.339 24 N -0.167 5.167 25 H 0.051 0.949 26 H 0.113 0.887 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.249 0.751 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.472 -5.440 16.842 18.036 hybrid contribution -0.665 0.026 -0.361 0.757 sum 2.807 -5.415 16.481 17.573 Atomic orbital electron populations 1.21760 0.96398 1.00005 1.00973 1.18919 0.94228 0.96838 0.88904 0.92841 1.21168 1.30908 1.12761 0.88865 0.90694 1.24938 0.95099 0.95069 0.99116 1.69880 1.37208 1.23120 1.23455 0.86384 0.78622 0.79790 0.82406 1.19564 1.21026 1.21030 1.22364 0.79497 0.85284 0.83694 1.90656 1.33124 1.24316 1.85279 1.44417 1.56570 1.25998 1.04745 1.18692 0.90714 0.89164 0.86609 1.21514 1.06690 1.04157 0.91947 1.21198 0.94470 0.93369 0.98342 1.21625 1.03890 1.00470 0.97475 1.20336 0.94784 0.94293 0.88642 1.20098 0.99557 0.90630 0.99091 1.22946 0.84125 0.80242 0.81208 1.90834 1.21980 1.73273 1.50135 1.84461 1.54810 1.31993 1.62655 1.67472 1.11950 1.05020 1.32213 0.94880 0.88664 0.96943 0.93007 0.75130 0.84843 0.84782 0.85126 0.86002 0.86423 0.73214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.87 37.16 0.33 -2.81 16 2 C 0.03 0.82 2.64 -92.92 -0.24 0.58 16 3 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.50 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.07 2.32 6.75 -52.48 -0.35 1.96 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.39 11.32 55.43 0.63 -24.77 16 8 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.50 12.09 7.11 -10.99 -0.08 12.01 16 13 O -0.47 -12.89 13.72 5.56 0.08 -12.82 16 14 N -0.67 -12.69 5.24 -11.43 -0.06 -12.75 16 15 C 0.38 6.88 7.42 -154.70 -1.15 5.73 16 16 C -0.22 -2.92 9.94 -39.24 -0.39 -3.31 16 17 C -0.05 -0.53 10.17 -39.31 -0.40 -0.93 16 18 C -0.21 -2.49 9.70 -39.42 -0.38 -2.87 16 19 C 0.16 2.43 5.77 -82.61 -0.48 1.95 16 20 C -0.06 -0.67 6.21 -29.04 -0.18 -0.85 16 21 C 0.48 7.24 8.26 36.01 0.30 7.54 16 22 O -0.48 -9.79 16.08 -18.74 -0.30 -10.09 16 23 O -0.53 -6.25 13.42 -39.28 -0.53 -6.78 16 24 N -0.45 -8.92 6.74 -8.60 -0.06 -8.97 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 27 H 0.01 0.23 7.69 -51.93 -0.40 -0.17 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.41 6.24 8.28 -40.82 -0.34 5.90 16 30 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 31 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.13 1.04 7.94 -52.48 -0.42 0.62 16 33 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.12 0.89 7.86 -51.93 -0.41 0.48 16 35 H 0.41 3.48 9.10 45.56 0.41 3.90 16 LS Contribution 309.70 15.07 4.67 4.67 Total: -1.00 -37.82 309.70 -6.72 -44.54 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.07 Total: 5.91 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -3.06 Total: 3.85 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.51 Total: -46.49 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.75 Total: -29.69 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -37.82 -6.72 -44.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.103 kcal (2) G-P(sol) polarization free energy of solvation -37.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds