Wall clock time and date at job start Tue Mar 31 2020 01:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47251 * 2 1 4 4 C 1.50700 * 109.47096 * 239.99984 * 2 1 3 5 5 H 1.08006 * 119.99719 * 240.00126 * 4 2 1 6 6 C 1.37867 * 120.00383 * 60.00029 * 4 2 1 7 7 N 1.31519 * 119.99956 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00264 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46808 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47112 * 119.99989 * 8 6 4 11 11 H 1.48500 * 109.46804 * 240.00240 * 8 6 4 12 12 C 1.50698 * 109.46907 * 119.99881 * 2 1 3 13 13 O 1.21276 * 120.00098 * 119.99977 * 12 2 1 14 14 N 1.34779 * 120.00093 * 299.99650 * 12 2 1 15 15 C 1.39407 * 120.00133 * 174.91908 * 14 12 2 16 16 C 1.39031 * 119.69490 * 185.04278 * 15 14 12 17 17 C 1.38361 * 119.09993 * 179.97438 * 16 15 14 18 18 C 1.38837 * 118.49357 * 0.02562 * 17 16 15 19 19 C 1.38070 * 119.31392 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.57670 * 180.02562 * 19 18 17 21 21 C 1.50702 * 109.47155 * 124.99637 * 20 19 18 22 22 O 1.20820 * 120.00207 * 359.97438 * 21 20 19 23 23 O 1.34237 * 119.99523 * 179.97438 * 21 20 19 24 24 N 1.31936 * 120.84701 * 359.71779 * 19 18 17 25 25 H 1.09000 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46556 * 60.00175 * 1 2 3 27 27 H 1.08995 * 109.46770 * 300.00419 * 1 2 3 28 28 H 0.97003 * 119.99760 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99693 * 354.92321 * 14 12 2 30 30 H 1.08004 * 120.45197 * 359.97438 * 16 15 14 31 31 H 1.08003 * 120.75086 * 180.02562 * 17 16 15 32 32 H 1.08003 * 120.34060 * 180.02562 * 18 17 16 33 33 H 1.09003 * 109.46928 * 244.99558 * 20 19 18 34 34 H 1.08996 * 109.47486 * 4.99192 * 20 19 18 35 35 H 0.96694 * 116.99527 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1661 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.0816 -0.9652 3.5909 16 6 1.6532 -0.5416 4.8439 17 6 2.0320 -1.2611 5.9633 18 6 2.8301 -2.3839 5.7902 19 6 3.2188 -2.7470 4.5161 20 6 4.0846 -3.9650 4.3213 21 6 3.4186 -4.9044 3.3492 22 8 2.3504 -4.6149 2.8647 23 8 4.0124 -6.0629 3.0217 24 7 2.8370 -2.0448 3.4664 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 0.5139 0.8899 28 1 0.7097 1.1617 -3.4845 29 1 1.2115 0.5793 2.5449 30 1 1.0330 0.3372 4.9421 31 1 1.7141 -0.9562 6.9494 32 1 3.1430 -2.9677 6.6433 33 1 5.0546 -3.6619 3.9271 34 1 4.2226 -4.4694 5.2776 35 1 3.5471 -6.6325 2.3939 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:26 Heat of formation + Delta-G solvation = -108.876791 kcal Electronic energy + Delta-G solvation = -21403.008173 eV Core-core repulsion = 17979.409574 eV Total energy + Delta-G solvation = -3423.598599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.82734 -41.00883 -39.90043 -37.05221 -36.00952 -35.77016 -33.77613 -32.95645 -31.91365 -29.25834 -27.25473 -25.46512 -24.37189 -23.44222 -22.16124 -21.05265 -19.06033 -18.75065 -18.17129 -17.82625 -17.48613 -17.07878 -16.74551 -16.52343 -16.20176 -15.99478 -15.19228 -14.92409 -14.68720 -14.37467 -13.88188 -13.76754 -13.56821 -13.30635 -13.00256 -12.88023 -12.71559 -12.61084 -12.44618 -12.27840 -12.06874 -11.66581 -11.47288 -11.09537 -10.84915 -10.64228 -10.52211 -9.75072 -9.11344 -8.19310 -6.29284 0.15104 0.52369 1.34881 1.35740 1.37132 1.51167 1.93357 2.11673 2.24025 2.42917 3.06905 3.11375 3.25073 3.81550 4.10526 4.20464 4.32965 4.39521 4.47049 4.48580 4.61095 4.68738 4.88258 4.88770 4.94522 5.11466 5.30714 5.44013 5.47163 5.69384 5.69814 5.84648 5.98668 6.14805 6.46274 6.77609 7.06692 7.24854 7.36827 7.60559 8.86971 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.005393 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.614536 B = 5191.065782 C = 6441.100447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.029 3.971 3 H 0.048 0.952 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.284 1.284 10 H -0.272 1.272 11 H -0.270 1.270 12 C 0.507 3.493 13 O -0.517 6.517 14 N -0.661 5.661 15 C 0.331 3.669 16 C -0.206 4.206 17 C -0.044 4.044 18 C -0.189 4.189 19 C 0.125 3.875 20 C -0.054 4.054 21 C 0.475 3.525 22 O -0.542 6.542 23 O -0.515 6.515 24 N -0.508 5.508 25 H 0.015 0.985 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.266 0.734 29 H 0.427 0.573 30 H 0.164 0.836 31 H 0.184 0.816 32 H 0.179 0.821 33 H 0.127 0.873 34 H 0.171 0.829 35 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.910 -4.796 20.968 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.008 3.992 3 H 0.065 0.935 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.195 1.195 12 C 0.295 3.705 13 O -0.388 6.388 14 N -0.309 5.309 15 C 0.100 3.900 16 C -0.229 4.229 17 C -0.070 4.070 18 C -0.210 4.210 19 C -0.014 4.014 20 C -0.092 4.092 21 C 0.317 3.683 22 O -0.430 6.430 23 O -0.329 6.329 24 N -0.223 5.223 25 H 0.034 0.966 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.266 0.734 30 H 0.182 0.818 31 H 0.201 0.799 32 H 0.196 0.804 33 H 0.145 0.855 34 H 0.189 0.811 35 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.478 -5.294 19.922 20.905 hybrid contribution -0.626 -0.078 -1.131 1.295 sum 2.852 -5.372 18.791 19.751 Atomic orbital electron populations 1.21559 0.94991 0.99095 1.02017 1.18833 0.95310 0.96068 0.89037 0.93470 1.21249 1.31654 1.12584 0.91193 0.93907 1.25567 0.95150 0.95763 1.01299 1.69942 1.37104 1.23429 1.24348 0.85543 0.78399 0.78531 0.79396 1.20931 1.19759 1.19492 1.21930 0.79023 0.84521 0.85041 1.90625 1.35459 1.26345 1.86363 1.43868 1.56536 1.26586 1.03906 1.19033 0.93354 0.90248 0.87391 1.21875 1.05673 1.04866 0.90493 1.21837 0.93156 0.92370 0.99606 1.22195 1.01361 1.00130 0.97293 1.20930 0.96068 0.95101 0.89336 1.20369 0.98640 0.89453 1.00704 1.23702 0.83285 0.80642 0.80643 1.90815 1.24911 1.74674 1.52641 1.84441 1.54364 1.31312 1.62737 1.67257 1.13329 1.06325 1.35376 0.96605 0.90633 0.92690 0.92459 0.73351 0.81809 0.79902 0.80412 0.85506 0.81147 0.71728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.87 71.98 0.64 -5.05 16 2 C 0.03 1.53 2.64 -12.29 -0.03 1.49 16 3 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 4 C -0.53 -32.13 8.37 25.60 0.21 -31.91 16 5 H 0.04 2.83 6.75 -2.91 -0.02 2.81 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -52.05 11.32 21.44 0.24 -51.81 16 8 Si 0.96 46.60 29.54 68.60 2.03 48.63 16 9 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 12 C 0.51 25.55 7.11 87.66 0.62 26.17 16 13 O -0.52 -30.47 13.72 -3.02 -0.04 -30.52 16 14 N -0.66 -25.47 5.24 -308.45 -1.62 -27.09 16 15 C 0.33 11.89 7.42 132.91 0.99 12.87 16 16 C -0.21 -4.90 9.94 22.49 0.22 -4.68 16 17 C -0.04 -0.77 10.17 22.44 0.23 -0.54 16 18 C -0.19 -3.59 9.70 22.37 0.22 -3.37 16 19 C 0.12 3.61 5.77 42.50 0.25 3.85 16 20 C -0.05 -1.22 6.21 29.10 0.18 -1.04 16 21 C 0.47 14.55 8.26 71.24 0.59 15.14 16 22 O -0.54 -23.22 16.08 21.98 0.35 -22.87 16 23 O -0.51 -12.00 13.42 -51.48 -0.69 -12.69 16 24 N -0.51 -20.38 6.74 -181.12 -1.22 -21.60 16 25 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 3.92 6.07 -2.38 -0.01 3.91 16 27 H 0.05 2.10 7.69 -2.39 -0.02 2.08 16 28 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.43 12.80 8.28 -92.71 -0.77 12.04 16 30 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.18 1.64 7.94 -2.91 -0.02 1.62 16 33 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.17 1.84 7.86 -2.39 -0.02 1.82 16 35 H 0.42 7.25 9.10 -74.06 -0.67 6.57 16 Total: -1.00 -89.56 309.70 3.32 -86.24 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.29 Total: 17.08 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 4.56 Total: 14.62 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -2.59 Total: -100.49 kcal Atomic # 8 Polarization: -65.70 SS G_CDS: -0.38 Total: -66.08 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -89.56 3.32 -86.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.639 kcal (2) G-P(sol) polarization free energy of solvation -89.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds