Wall clock time and date at job start Tue Mar 31 2020 01:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46858 * 2 1 4 4 C 1.50701 * 109.46816 * 119.99660 * 2 1 3 5 5 H 1.07996 * 119.99872 * 119.99895 * 4 2 1 6 6 C 1.37879 * 120.00375 * 300.00167 * 4 2 1 7 7 N 1.31520 * 119.99618 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00366 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47346 * 89.99848 * 8 6 4 10 10 H 1.48499 * 109.47102 * 209.99850 * 8 6 4 11 11 H 1.48500 * 109.47145 * 329.99787 * 8 6 4 12 12 C 1.50693 * 109.47172 * 239.99741 * 2 1 3 13 13 O 1.21276 * 119.99972 * 240.00266 * 12 2 1 14 14 N 1.34780 * 120.00174 * 60.00180 * 12 2 1 15 15 C 1.39402 * 119.99893 * 174.77757 * 14 12 2 16 16 C 1.39045 * 119.69490 * 185.02867 * 15 14 12 17 17 C 1.38353 * 119.10140 * 179.97438 * 16 15 14 18 18 C 1.38843 * 118.49398 * 0.02562 * 17 16 15 19 19 C 1.38072 * 119.31502 * 359.97438 * 18 17 16 20 20 C 1.50693 * 119.57754 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47167 * 125.00065 * 20 19 18 22 22 O 1.20826 * 120.00131 * 359.97438 * 21 20 19 23 23 O 1.34234 * 119.99650 * 179.97438 * 21 20 19 24 24 N 1.31935 * 120.84323 * 359.72761 * 19 18 17 25 25 H 1.08995 * 109.47279 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47343 * 300.00071 * 1 2 3 27 27 H 1.08999 * 109.46968 * 60.00055 * 1 2 3 28 28 H 0.96996 * 119.99632 * 180.02562 * 7 6 4 29 29 H 0.96992 * 119.99583 * 355.04843 * 14 12 2 30 30 H 1.07999 * 120.44620 * 359.96937 * 16 15 14 31 31 H 1.07995 * 120.75156 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.34043 * 180.02562 * 18 17 16 33 33 H 1.09006 * 109.46699 * 244.99997 * 20 19 18 34 34 H 1.09006 * 109.47230 * 4.99483 * 20 19 18 35 35 H 0.96704 * 116.99665 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.6302 -0.5439 4.4120 10 1 1.3442 -0.9487 5.1123 11 1 2.4878 -2.5652 3.7124 12 6 2.0323 -0.7104 -1.2304 13 8 2.7295 -1.6965 -1.1190 14 7 1.7068 -0.2500 -2.4545 15 6 2.2586 -0.8401 -3.5906 16 6 2.0017 -0.2950 -4.8437 17 6 2.5561 -0.8902 -5.9629 18 6 3.3512 -2.0152 -5.7896 19 6 3.5641 -2.5028 -4.5155 20 6 4.4265 -3.7231 -4.3205 21 6 5.5326 -3.4062 -3.3473 22 8 5.6127 -2.3025 -2.8622 23 8 6.4289 -4.3502 -3.0195 24 7 3.0269 -1.9105 -3.4660 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7086 1.1613 3.4843 29 1 1.0916 0.4944 -2.5448 30 1 1.3779 0.5811 -4.9420 31 1 2.3745 -0.4889 -6.9489 32 1 3.7991 -2.5033 -6.6425 33 1 3.8190 -4.5382 -3.9273 34 1 4.8576 -4.0199 -5.2767 35 1 7.1204 -4.0998 -2.3915 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210784.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:32 Heat of formation + Delta-G solvation = -80.642357 kcal Electronic energy + Delta-G solvation = -21375.144636 eV Core-core repulsion = 17952.770374 eV Total energy + Delta-G solvation = -3422.374262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.63631 -39.73718 -38.38055 -35.90648 -34.52060 -33.73512 -32.72943 -31.43910 -30.21367 -28.15703 -25.14631 -23.98446 -23.21716 -21.93958 -21.05432 -19.42074 -17.88063 -17.34599 -16.57871 -16.21746 -16.10438 -15.98006 -15.56053 -14.95238 -14.57924 -14.34593 -13.94520 -13.44044 -13.03844 -12.92707 -12.73810 -12.54939 -12.33467 -11.94449 -11.54671 -11.24873 -11.00106 -10.77311 -10.70654 -10.43236 -10.30631 -10.07425 -9.95653 -9.57533 -9.36217 -8.98488 -8.44724 -8.16668 -7.88445 -6.02903 -4.05668 1.20963 1.52634 2.49181 3.14071 3.35269 3.40297 3.43449 3.51735 3.67922 4.23275 4.30004 4.48664 4.70422 5.07037 5.17318 5.20410 5.30766 5.36138 5.41479 5.46901 5.78211 5.92579 6.22783 6.25169 6.53068 6.57784 6.70486 6.79115 6.89093 7.14948 7.44753 7.69013 7.83526 8.03687 8.12446 8.25430 8.54260 9.03385 9.22541 9.59862 11.04914 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018319 B = 0.005402 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.096331 B = 5182.090209 C = 6518.258939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.054 0.946 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.503 3.497 13 O -0.467 6.467 14 N -0.671 5.671 15 C 0.381 3.619 16 C -0.219 4.219 17 C -0.048 4.048 18 C -0.213 4.213 19 C 0.160 3.840 20 C -0.056 4.056 21 C 0.476 3.524 22 O -0.479 6.479 23 O -0.526 6.526 24 N -0.452 5.452 25 H 0.032 0.968 26 H 0.095 0.905 27 H 0.011 0.989 28 H 0.261 0.739 29 H 0.412 0.588 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 -4.663 -17.930 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.072 0.928 4 C -0.538 4.538 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.292 3.708 13 O -0.334 6.334 14 N -0.318 5.318 15 C 0.148 3.852 16 C -0.243 4.243 17 C -0.074 4.074 18 C -0.235 4.235 19 C 0.020 3.980 20 C -0.094 4.094 21 C 0.315 3.685 22 O -0.363 6.363 23 O -0.339 6.339 24 N -0.167 5.167 25 H 0.052 0.948 26 H 0.114 0.886 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.249 0.751 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.554 -5.364 -16.821 18.010 hybrid contribution 0.204 0.626 0.358 0.749 sum 3.758 -4.739 -16.463 17.539 Atomic orbital electron populations 1.21771 0.96445 0.99963 1.01021 1.18916 0.94180 0.96896 0.88903 0.92800 1.21125 1.30942 1.12845 0.88877 0.90747 1.24938 0.95071 0.95088 0.99107 1.69867 1.37096 1.23133 1.23568 0.86429 0.78444 0.80261 0.81964 1.20656 1.21274 1.19747 1.22353 0.79620 0.85144 0.83693 1.90655 1.33461 1.23980 1.85285 1.44422 1.46776 1.35808 1.04760 1.18695 0.90247 0.89631 0.86615 1.21514 1.06990 1.03867 0.91946 1.21196 0.93921 0.93913 0.98341 1.21626 1.04536 0.99825 0.97476 1.20335 0.94593 0.94477 0.88643 1.20099 0.92938 0.97268 0.99076 1.22945 0.81783 0.82557 0.81216 1.90834 1.71546 1.23710 1.50163 1.84462 1.41243 1.45565 1.62641 1.67467 1.08666 1.08309 1.32227 0.94843 0.88620 0.96976 0.92948 0.75109 0.84842 0.84779 0.85123 0.86000 0.86417 0.73208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.86 37.16 0.33 -2.75 16 2 C 0.03 0.82 2.65 -92.93 -0.25 0.57 16 3 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 4 C -0.50 -14.47 8.37 -34.44 -0.29 -14.76 16 5 H 0.07 2.30 6.75 -52.49 -0.35 1.94 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.39 11.32 55.43 0.63 -24.77 16 8 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 12 C 0.50 12.11 7.11 -10.99 -0.08 12.03 16 13 O -0.47 -12.90 13.72 5.56 0.08 -12.82 16 14 N -0.67 -12.73 5.31 -11.43 -0.06 -12.79 16 15 C 0.38 6.89 7.42 -154.70 -1.15 5.74 16 16 C -0.22 -2.93 9.94 -39.24 -0.39 -3.32 16 17 C -0.05 -0.53 10.17 -39.32 -0.40 -0.93 16 18 C -0.21 -2.49 9.71 -39.42 -0.38 -2.87 16 19 C 0.16 2.43 5.77 -82.61 -0.48 1.95 16 20 C -0.06 -0.67 6.21 -29.04 -0.18 -0.85 16 21 C 0.48 7.23 8.26 36.00 0.30 7.53 16 22 O -0.48 -9.77 16.08 -18.75 -0.30 -10.07 16 23 O -0.53 -6.23 13.42 -39.27 -0.53 -6.76 16 24 N -0.45 -8.92 6.74 -8.60 -0.06 -8.98 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 27 H 0.01 0.22 7.46 -51.93 -0.39 -0.17 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.41 6.28 7.98 -40.82 -0.33 5.95 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.13 1.04 7.94 -52.49 -0.42 0.62 16 33 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.12 0.89 7.86 -51.93 -0.41 0.48 16 35 H 0.41 3.46 9.10 45.56 0.41 3.88 16 LS Contribution 309.25 15.07 4.66 4.66 Total: -1.00 -37.74 309.25 -6.70 -44.45 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.04 Total: 5.96 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -3.06 Total: 3.90 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.51 Total: -46.53 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.75 Total: -29.66 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -37.74 -6.70 -44.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210784.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.194 kcal (2) G-P(sol) polarization free energy of solvation -37.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds