Wall clock time and date at job start Tue Mar 31 2020 01:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46858 * 2 1 4 4 C 1.50701 * 109.46816 * 119.99660 * 2 1 3 5 5 H 1.07996 * 119.99872 * 119.99895 * 4 2 1 6 6 C 1.37879 * 120.00375 * 300.00167 * 4 2 1 7 7 N 1.31520 * 119.99618 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00366 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47346 * 89.99848 * 8 6 4 10 10 H 1.48499 * 109.47102 * 209.99850 * 8 6 4 11 11 H 1.48500 * 109.47145 * 329.99787 * 8 6 4 12 12 C 1.50693 * 109.47172 * 239.99741 * 2 1 3 13 13 O 1.21276 * 119.99972 * 240.00266 * 12 2 1 14 14 N 1.34780 * 120.00174 * 60.00180 * 12 2 1 15 15 C 1.39402 * 119.99893 * 174.77757 * 14 12 2 16 16 C 1.39045 * 119.69490 * 185.02867 * 15 14 12 17 17 C 1.38353 * 119.10140 * 179.97438 * 16 15 14 18 18 C 1.38843 * 118.49398 * 0.02562 * 17 16 15 19 19 C 1.38072 * 119.31502 * 359.97438 * 18 17 16 20 20 C 1.50693 * 119.57754 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47167 * 125.00065 * 20 19 18 22 22 O 1.20826 * 120.00131 * 359.97438 * 21 20 19 23 23 O 1.34234 * 119.99650 * 179.97438 * 21 20 19 24 24 N 1.31935 * 120.84323 * 359.72761 * 19 18 17 25 25 H 1.08995 * 109.47279 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47343 * 300.00071 * 1 2 3 27 27 H 1.08999 * 109.46968 * 60.00055 * 1 2 3 28 28 H 0.96996 * 119.99632 * 180.02562 * 7 6 4 29 29 H 0.96992 * 119.99583 * 355.04843 * 14 12 2 30 30 H 1.07999 * 120.44620 * 359.96937 * 16 15 14 31 31 H 1.07995 * 120.75156 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.34043 * 180.02562 * 18 17 16 33 33 H 1.09006 * 109.46699 * 244.99997 * 20 19 18 34 34 H 1.09006 * 109.47230 * 4.99483 * 20 19 18 35 35 H 0.96704 * 116.99665 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.6302 -0.5439 4.4120 10 1 1.3442 -0.9487 5.1123 11 1 2.4878 -2.5652 3.7124 12 6 2.0323 -0.7104 -1.2304 13 8 2.7295 -1.6965 -1.1190 14 7 1.7068 -0.2500 -2.4545 15 6 2.2586 -0.8401 -3.5906 16 6 2.0017 -0.2950 -4.8437 17 6 2.5561 -0.8902 -5.9629 18 6 3.3512 -2.0152 -5.7896 19 6 3.5641 -2.5028 -4.5155 20 6 4.4265 -3.7231 -4.3205 21 6 5.5326 -3.4062 -3.3473 22 8 5.6127 -2.3025 -2.8622 23 8 6.4289 -4.3502 -3.0195 24 7 3.0269 -1.9105 -3.4660 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7086 1.1613 3.4843 29 1 1.0916 0.4944 -2.5448 30 1 1.3779 0.5811 -4.9420 31 1 2.3745 -0.4889 -6.9489 32 1 3.7991 -2.5033 -6.6425 33 1 3.8190 -4.5382 -3.9273 34 1 4.8576 -4.0199 -5.2767 35 1 7.1204 -4.0998 -2.3915 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210784.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:31 Heat of formation + Delta-G solvation = -108.840980 kcal Electronic energy + Delta-G solvation = -21376.367420 eV Core-core repulsion = 17952.770374 eV Total energy + Delta-G solvation = -3423.597046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.82916 -41.00978 -39.90320 -37.05198 -36.00985 -35.77182 -33.77822 -32.96212 -31.90874 -29.25710 -27.24715 -25.45568 -24.36851 -23.45881 -22.16051 -21.04151 -19.05919 -18.74886 -18.19228 -17.82103 -17.51279 -17.06932 -16.74620 -16.53660 -16.15353 -15.98040 -15.22772 -14.89913 -14.69785 -14.41080 -13.90658 -13.75537 -13.48355 -13.33767 -13.00686 -12.86617 -12.73815 -12.61016 -12.44783 -12.25779 -12.05074 -11.66922 -11.47450 -11.10137 -10.85254 -10.63867 -10.52586 -9.75279 -9.11535 -8.19091 -6.29277 0.14906 0.52220 1.34780 1.36895 1.37300 1.49636 1.93642 2.11193 2.23712 2.42794 3.06941 3.11243 3.24900 3.81404 4.10357 4.20308 4.32857 4.39446 4.46993 4.48543 4.61094 4.69781 4.88308 4.88987 4.95644 5.11462 5.30575 5.44202 5.47243 5.69658 5.70148 5.86348 5.98870 6.15216 6.45997 6.77399 7.06663 7.24624 7.36703 7.60236 8.86943 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018319 B = 0.005402 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.096331 B = 5182.090209 C = 6518.258939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.029 3.971 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.269 1.269 11 H -0.281 1.281 12 C 0.507 3.493 13 O -0.517 6.517 14 N -0.661 5.661 15 C 0.330 3.670 16 C -0.206 4.206 17 C -0.044 4.044 18 C -0.189 4.189 19 C 0.125 3.875 20 C -0.054 4.054 21 C 0.475 3.525 22 O -0.542 6.542 23 O -0.515 6.515 24 N -0.508 5.508 25 H 0.022 0.978 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.266 0.734 29 H 0.427 0.573 30 H 0.164 0.836 31 H 0.184 0.816 32 H 0.179 0.821 33 H 0.127 0.873 34 H 0.171 0.829 35 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -4.797 -20.981 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.007 3.993 3 H 0.059 0.941 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.194 1.194 11 H -0.206 1.206 12 C 0.295 3.705 13 O -0.388 6.388 14 N -0.309 5.309 15 C 0.100 3.900 16 C -0.229 4.229 17 C -0.070 4.070 18 C -0.210 4.210 19 C -0.014 4.014 20 C -0.092 4.092 21 C 0.317 3.683 22 O -0.431 6.431 23 O -0.328 6.328 24 N -0.223 5.223 25 H 0.041 0.959 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.266 0.734 30 H 0.182 0.818 31 H 0.201 0.799 32 H 0.196 0.804 33 H 0.145 0.855 34 H 0.189 0.811 35 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.261 -5.499 -19.934 20.935 hybrid contribution 0.365 0.628 1.135 1.347 sum 3.626 -4.871 -18.800 19.756 Atomic orbital electron populations 1.21565 0.94564 0.99521 1.02056 1.18830 0.95663 0.95744 0.89044 0.94099 1.21224 1.31682 1.12701 0.91199 0.93867 1.25571 0.95127 0.95782 1.01301 1.69936 1.37001 1.23451 1.24413 0.85593 0.78451 0.78646 0.79168 1.20139 1.19390 1.20615 1.21922 0.79084 0.84452 0.85034 1.90623 1.35758 1.26020 1.86364 1.43874 1.47021 1.36113 1.03932 1.19037 0.92505 0.91113 0.87395 1.21876 1.06357 1.04197 0.90495 1.21836 0.92352 0.93167 0.99602 1.22198 1.02456 0.99022 0.97296 1.20931 0.95498 0.95665 0.89337 1.20370 0.91684 0.96424 1.00692 1.23699 0.82095 0.81803 0.80654 1.90816 1.73256 1.26335 1.52668 1.84442 1.41208 1.44467 1.62726 1.67251 1.09875 1.09776 1.35390 0.95877 0.90742 0.92594 0.92454 0.73363 0.81819 0.79893 0.80399 0.85507 0.81135 0.71714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.86 71.98 0.64 -4.92 16 2 C 0.03 1.51 2.65 -12.29 -0.03 1.48 16 3 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.53 -32.23 8.37 25.60 0.21 -32.01 16 5 H 0.04 2.85 6.75 -2.91 -0.02 2.83 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -52.13 11.32 21.45 0.24 -51.89 16 8 Si 0.96 46.62 29.54 68.60 2.03 48.65 16 9 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 12 C 0.51 25.60 7.11 87.65 0.62 26.22 16 13 O -0.52 -30.45 13.72 -3.02 -0.04 -30.49 16 14 N -0.66 -25.56 5.31 -308.45 -1.64 -27.19 16 15 C 0.33 11.90 7.42 132.92 0.99 12.89 16 16 C -0.21 -4.91 9.94 22.49 0.22 -4.69 16 17 C -0.04 -0.77 10.17 22.44 0.23 -0.54 16 18 C -0.19 -3.59 9.71 22.38 0.22 -3.37 16 19 C 0.12 3.61 5.77 42.50 0.25 3.85 16 20 C -0.05 -1.22 6.21 29.10 0.18 -1.04 16 21 C 0.47 14.53 8.26 71.24 0.59 15.12 16 22 O -0.54 -23.20 16.08 21.96 0.35 -22.84 16 23 O -0.51 -11.96 13.42 -51.45 -0.69 -12.65 16 24 N -0.51 -20.39 6.74 -181.12 -1.22 -21.61 16 25 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 27 H 0.06 2.05 7.46 -2.39 -0.02 2.03 16 28 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.43 12.87 7.98 -92.71 -0.74 12.13 16 30 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.18 1.63 7.94 -2.91 -0.02 1.61 16 33 H 0.13 2.70 8.14 -2.38 -0.02 2.68 16 34 H 0.17 1.84 7.86 -2.38 -0.02 1.82 16 35 H 0.42 7.20 9.10 -74.05 -0.67 6.53 16 Total: -1.00 -89.53 309.25 3.33 -86.20 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.26 Total: 17.16 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 4.56 Total: 14.67 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -2.62 Total: -100.69 kcal Atomic # 8 Polarization: -65.61 SS G_CDS: -0.38 Total: -65.99 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -89.53 3.33 -86.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210784.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.646 kcal (2) G-P(sol) polarization free energy of solvation -89.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds