Wall clock time and date at job start Tue Mar 31 2020 01:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46631 * 2 1 4 4 C 1.50699 * 109.47187 * 240.00252 * 2 1 3 5 5 H 1.08003 * 119.99565 * 275.09592 * 4 2 1 6 6 C 1.37879 * 120.00137 * 95.10249 * 4 2 1 7 7 N 1.31513 * 119.99901 * 184.91008 * 6 4 2 8 8 Si 1.86793 * 120.00086 * 4.90576 * 6 4 2 9 9 H 1.48504 * 109.47272 * 84.82273 * 8 6 4 10 10 H 1.48494 * 109.47357 * 204.82552 * 8 6 4 11 11 H 1.48501 * 109.47098 * 324.82477 * 8 6 4 12 12 C 1.50703 * 109.47348 * 119.99572 * 2 1 3 13 13 O 1.21282 * 119.99500 * 120.00150 * 12 2 1 14 14 N 1.34775 * 120.00102 * 300.00593 * 12 2 1 15 15 N 1.40098 * 119.99951 * 179.97438 * 14 12 2 16 16 C 1.39708 * 120.00053 * 179.97438 * 15 14 12 17 17 C 1.39025 * 120.00260 * 359.72625 * 16 15 14 18 18 C 1.38216 * 120.23167 * 179.71951 * 17 16 15 19 19 C 1.38010 * 120.23233 * 0.55479 * 18 17 16 20 20 C 1.39621 * 119.99810 * 359.72630 * 19 18 17 21 21 C 1.47744 * 120.11601 * 180.02562 * 20 19 18 22 22 O 1.21468 * 120.00309 * 179.97438 * 21 20 19 23 23 O 1.34714 * 119.99764 * 359.97438 * 21 20 19 24 24 C 1.38629 * 120.00371 * 180.02562 * 16 15 14 25 25 H 1.09005 * 109.46684 * 175.07365 * 1 2 3 26 26 H 1.09000 * 109.46941 * 295.07152 * 1 2 3 27 27 H 1.08994 * 109.47346 * 55.07939 * 1 2 3 28 28 H 0.96995 * 120.00239 * 180.02562 * 7 6 4 29 29 H 0.97002 * 119.99795 * 359.97438 * 14 12 2 30 30 H 0.96999 * 119.99721 * 0.02562 * 15 14 12 31 31 H 1.08009 * 119.88272 * 359.97438 * 17 16 15 32 32 H 1.08007 * 119.88297 * 180.26171 * 18 17 16 33 33 H 1.08001 * 120.00028 * 179.70006 * 19 18 17 34 34 H 0.96698 * 116.99674 * 179.97438 * 23 21 20 35 35 H 1.08010 * 120.11282 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1340 -1.7856 -1.2295 6 6 2.3623 0.0124 -2.3574 7 7 2.7081 -0.6127 -3.4616 8 14 2.3180 1.8793 -2.3157 9 1 3.6037 2.3932 -1.7787 10 1 2.1124 2.4004 -3.6910 11 1 1.2027 2.3287 -1.4443 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7068 -0.2499 2.4546 15 7 2.1734 -0.9105 3.5985 16 6 1.8363 -0.4329 4.8674 17 6 1.0425 0.7013 4.9950 18 6 0.7013 1.1745 6.2480 19 6 1.1557 0.5311 7.3813 20 6 1.9583 -0.6053 7.2644 21 6 2.4457 -1.2965 8.4758 22 8 3.1435 -2.2853 8.3717 23 8 2.1163 -0.8300 9.6959 24 6 2.2984 -1.0863 5.9993 25 1 -0.3633 -1.0239 -0.0883 26 1 -0.3633 0.4355 0.9308 27 1 -0.3634 0.5882 -0.8426 28 1 2.9406 -0.1043 -4.2542 29 1 1.1493 0.5390 2.5435 30 1 2.7312 -1.6991 3.5095 31 1 0.6878 1.2120 4.1119 32 1 0.0808 2.0537 6.3406 33 1 0.8908 0.9070 8.3585 34 1 2.4585 -1.3158 10.4587 35 1 2.9189 -1.9651 5.9024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:05 Heat of formation + Delta-G solvation = -64.632366 kcal Electronic energy + Delta-G solvation = -20474.922387 eV Core-core repulsion = 17053.242370 eV Total energy + Delta-G solvation = -3421.680017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65433 -39.64112 -38.61797 -36.34388 -35.65394 -33.85810 -32.19757 -31.46007 -31.10045 -28.07160 -25.39625 -25.09451 -22.95904 -22.55312 -21.13465 -19.93525 -18.55465 -18.05847 -17.34283 -16.84013 -16.29688 -16.19490 -15.86492 -15.05645 -14.69753 -14.60773 -14.36744 -13.90160 -13.64023 -13.50677 -13.23804 -12.63072 -12.44508 -12.03956 -11.89802 -11.67739 -11.55170 -11.40213 -11.18889 -10.86677 -10.84669 -10.43856 -9.94078 -9.35603 -9.30058 -9.25755 -9.04700 -8.68056 -7.19472 -6.18213 -4.19237 0.49117 1.30543 2.14271 2.35926 2.79678 3.16446 3.21690 3.26293 3.36795 3.65950 4.27548 4.36896 4.62663 4.70348 4.95135 5.03200 5.09979 5.30538 5.45843 5.56194 5.67112 5.98545 6.00678 6.07732 6.17759 6.19849 6.24137 6.34858 6.49672 6.63805 6.97513 7.08532 7.38443 7.62283 7.66443 7.94978 8.39113 8.92975 8.97151 9.39381 10.94542 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036578 B = 0.003351 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.298100 B = 8353.427442 C = 8782.085739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.010 3.990 3 H 0.059 0.941 4 C -0.499 4.499 5 H 0.088 0.912 6 C 0.074 3.926 7 N -0.889 5.889 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.263 1.263 12 C 0.518 3.482 13 O -0.525 6.525 14 N -0.544 5.544 15 N -0.540 5.540 16 C 0.219 3.781 17 C -0.170 4.170 18 C -0.077 4.077 19 C -0.130 4.130 20 C -0.076 4.076 21 C 0.528 3.472 22 O -0.512 6.512 23 O -0.512 6.512 24 C -0.134 4.134 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.267 0.733 29 H 0.415 0.585 30 H 0.434 0.566 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.413 0.587 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 6.175 22.614 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.014 4.014 3 H 0.077 0.923 4 C -0.537 4.537 5 H 0.106 0.894 6 C -0.129 4.129 7 N -0.526 5.526 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.188 1.188 12 C 0.307 3.693 13 O -0.397 6.397 14 N -0.295 5.295 15 N -0.261 5.261 16 C 0.112 3.888 17 C -0.194 4.194 18 C -0.095 4.095 19 C -0.150 4.150 20 C -0.078 4.078 21 C 0.372 3.628 22 O -0.402 6.402 23 O -0.323 6.323 24 C -0.158 4.158 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.256 0.744 30 H 0.277 0.723 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.272 0.728 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.984 5.469 21.693 22.920 hybrid contribution 0.276 0.744 0.421 0.898 sum -4.708 6.213 22.114 23.448 Atomic orbital electron populations 1.22025 0.96325 1.01823 0.99334 1.19337 0.94313 0.97015 0.90691 0.92296 1.20699 1.43738 0.96249 0.93048 0.89418 1.25031 0.94359 0.98215 0.95288 1.69868 1.45078 1.35919 1.01710 0.86957 0.79094 0.86367 0.77760 1.19964 1.21035 1.18800 1.22442 0.79610 0.85307 0.81953 1.90615 1.37143 1.26285 1.85662 1.45843 1.55182 1.30932 0.97496 1.43520 1.56228 1.31235 0.95165 1.17563 0.94333 0.93326 0.83585 1.20765 1.02596 0.97436 0.98628 1.20848 0.98268 0.99169 0.91236 1.21134 0.99055 0.95440 0.99418 1.18585 1.02070 0.97563 0.89552 1.20956 0.76736 0.81555 0.83516 1.90902 1.35936 1.25819 1.87500 1.84561 1.72418 1.58803 1.16541 1.20432 1.03991 1.02188 0.89199 0.92564 0.95488 0.92185 0.92292 0.74404 0.72308 0.85722 0.85045 0.84821 0.72834 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.12 37.16 0.34 -2.17 16 2 C 0.01 0.21 2.30 -92.92 -0.21 0.00 16 3 H 0.06 1.22 5.29 -51.93 -0.27 0.95 16 4 C -0.50 -13.73 8.36 -34.44 -0.29 -14.01 16 5 H 0.09 2.76 7.61 -52.48 -0.40 2.36 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 7 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 8 Si 0.87 19.92 26.99 -169.99 -4.59 15.33 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.26 -5.43 6.82 56.52 0.39 -5.05 16 12 C 0.52 10.80 7.27 -10.98 -0.08 10.72 16 13 O -0.53 -13.06 15.61 5.56 0.09 -12.97 16 14 N -0.54 -8.63 6.08 31.22 0.19 -8.44 16 15 N -0.54 -7.88 6.45 32.39 0.21 -7.67 16 16 C 0.22 2.70 6.71 -83.83 -0.56 2.14 16 17 C -0.17 -1.78 9.48 -39.30 -0.37 -2.15 16 18 C -0.08 -0.67 10.02 -39.67 -0.40 -1.06 16 19 C -0.13 -1.19 9.61 -39.15 -0.38 -1.56 16 20 C -0.08 -0.83 5.87 -105.01 -0.62 -1.45 16 21 C 0.53 5.72 8.27 34.62 0.29 6.00 16 22 O -0.51 -7.06 17.13 -19.24 -0.33 -7.39 16 23 O -0.51 -3.75 12.68 -40.53 -0.51 -4.27 16 24 C -0.13 -1.61 9.44 -38.95 -0.37 -1.98 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.03 0.38 7.43 -51.93 -0.39 -0.01 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.41 5.30 5.95 -182.60 -1.09 4.21 16 30 H 0.43 6.61 8.01 -182.60 -1.46 5.14 16 31 H 0.12 1.14 6.19 -52.48 -0.32 0.81 16 32 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.13 0.98 7.60 -52.49 -0.40 0.58 16 34 H 0.41 1.18 9.11 45.56 0.42 1.59 16 35 H 0.14 1.68 7.65 -52.48 -0.40 1.28 16 LS Contribution 309.34 15.07 4.66 4.66 Total: -1.00 -34.41 309.34 -7.00 -41.41 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.74 Total: 8.69 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.75 Total: -3.57 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 1.17 Total: -41.89 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.76 Total: -24.63 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.59 Total: 15.33 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.41 -7.00 -41.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.224 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds