Wall clock time and date at job start Tue Mar 31 2020 01:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46631 * 2 1 4 4 C 1.50699 * 109.47187 * 240.00252 * 2 1 3 5 5 H 1.08003 * 119.99565 * 275.09592 * 4 2 1 6 6 C 1.37879 * 120.00137 * 95.10249 * 4 2 1 7 7 N 1.31513 * 119.99901 * 184.91008 * 6 4 2 8 8 Si 1.86793 * 120.00086 * 4.90576 * 6 4 2 9 9 H 1.48504 * 109.47272 * 84.82273 * 8 6 4 10 10 H 1.48494 * 109.47357 * 204.82552 * 8 6 4 11 11 H 1.48501 * 109.47098 * 324.82477 * 8 6 4 12 12 C 1.50703 * 109.47348 * 119.99572 * 2 1 3 13 13 O 1.21282 * 119.99500 * 120.00150 * 12 2 1 14 14 N 1.34775 * 120.00102 * 300.00593 * 12 2 1 15 15 N 1.40098 * 119.99951 * 179.97438 * 14 12 2 16 16 C 1.39708 * 120.00053 * 179.97438 * 15 14 12 17 17 C 1.39025 * 120.00260 * 359.72625 * 16 15 14 18 18 C 1.38216 * 120.23167 * 179.71951 * 17 16 15 19 19 C 1.38010 * 120.23233 * 0.55479 * 18 17 16 20 20 C 1.39621 * 119.99810 * 359.72630 * 19 18 17 21 21 C 1.47744 * 120.11601 * 180.02562 * 20 19 18 22 22 O 1.21468 * 120.00309 * 179.97438 * 21 20 19 23 23 O 1.34714 * 119.99764 * 359.97438 * 21 20 19 24 24 C 1.38629 * 120.00371 * 180.02562 * 16 15 14 25 25 H 1.09005 * 109.46684 * 175.07365 * 1 2 3 26 26 H 1.09000 * 109.46941 * 295.07152 * 1 2 3 27 27 H 1.08994 * 109.47346 * 55.07939 * 1 2 3 28 28 H 0.96995 * 120.00239 * 180.02562 * 7 6 4 29 29 H 0.97002 * 119.99795 * 359.97438 * 14 12 2 30 30 H 0.96999 * 119.99721 * 0.02562 * 15 14 12 31 31 H 1.08009 * 119.88272 * 359.97438 * 17 16 15 32 32 H 1.08007 * 119.88297 * 180.26171 * 18 17 16 33 33 H 1.08001 * 120.00028 * 179.70006 * 19 18 17 34 34 H 0.96698 * 116.99674 * 179.97438 * 23 21 20 35 35 H 1.08010 * 120.11282 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1340 -1.7856 -1.2295 6 6 2.3623 0.0124 -2.3574 7 7 2.7081 -0.6127 -3.4616 8 14 2.3180 1.8793 -2.3157 9 1 3.6037 2.3932 -1.7787 10 1 2.1124 2.4004 -3.6910 11 1 1.2027 2.3287 -1.4443 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7068 -0.2499 2.4546 15 7 2.1734 -0.9105 3.5985 16 6 1.8363 -0.4329 4.8674 17 6 1.0425 0.7013 4.9950 18 6 0.7013 1.1745 6.2480 19 6 1.1557 0.5311 7.3813 20 6 1.9583 -0.6053 7.2644 21 6 2.4457 -1.2965 8.4758 22 8 3.1435 -2.2853 8.3717 23 8 2.1163 -0.8300 9.6959 24 6 2.2984 -1.0863 5.9993 25 1 -0.3633 -1.0239 -0.0883 26 1 -0.3633 0.4355 0.9308 27 1 -0.3634 0.5882 -0.8426 28 1 2.9406 -0.1043 -4.2542 29 1 1.1493 0.5390 2.5435 30 1 2.7312 -1.6991 3.5095 31 1 0.6878 1.2120 4.1119 32 1 0.0808 2.0537 6.3406 33 1 0.8908 0.9070 8.3585 34 1 2.4585 -1.3158 10.4587 35 1 2.9189 -1.9651 5.9024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592211868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:04 Heat of formation + Delta-G solvation = -91.179217 kcal Electronic energy + Delta-G solvation = -20476.073545 eV Core-core repulsion = 17053.242370 eV Total energy + Delta-G solvation = -3422.831175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50907 -40.92569 -39.74122 -37.10548 -36.87721 -35.71257 -33.79952 -32.60800 -32.24956 -29.15602 -27.24264 -25.96189 -24.51069 -23.42346 -22.09985 -21.34188 -19.61963 -19.19247 -18.87965 -18.12298 -17.66086 -17.01750 -16.68223 -16.43709 -16.17052 -16.01340 -15.49041 -15.12254 -14.66516 -14.57015 -14.41454 -14.29969 -14.05029 -13.19445 -12.97749 -12.79014 -12.70790 -12.59097 -12.50296 -12.35766 -12.16633 -11.75290 -11.70264 -11.29633 -10.78867 -10.68600 -10.41663 -10.09528 -8.29707 -8.28289 -6.36783 -0.33136 0.48933 0.94648 1.38046 1.42304 1.51056 1.53057 1.77136 2.06716 2.36076 2.83340 3.02822 3.26530 3.86669 3.94002 4.03167 4.17403 4.28146 4.36563 4.51045 4.65811 4.69214 4.78517 4.89173 5.10509 5.17754 5.30721 5.42322 5.46733 5.56676 5.57902 5.63924 5.91960 6.22399 6.43118 6.65973 6.79094 6.95739 7.25190 7.47023 8.89430 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036578 B = 0.003351 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.298100 B = 8353.427442 C = 8782.085739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.007 3.993 3 H 0.081 0.919 4 C -0.511 4.511 5 H 0.022 0.978 6 C 0.006 3.994 7 N -0.951 5.951 8 Si 0.947 3.053 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.214 1.214 12 C 0.517 3.483 13 O -0.581 6.581 14 N -0.518 5.518 15 N -0.553 5.553 16 C 0.198 3.802 17 C -0.167 4.167 18 C -0.069 4.069 19 C -0.112 4.112 20 C -0.092 4.092 21 C 0.533 3.467 22 O -0.552 6.552 23 O -0.498 6.498 24 C -0.146 4.146 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.268 0.732 29 H 0.433 0.567 30 H 0.426 0.574 31 H 0.143 0.857 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.434 0.566 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 10.337 25.697 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.016 4.016 3 H 0.099 0.901 4 C -0.549 4.549 5 H 0.041 0.959 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.768 3.232 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.136 1.136 12 C 0.306 3.694 13 O -0.458 6.458 14 N -0.267 5.267 15 N -0.277 5.277 16 C 0.095 3.905 17 C -0.191 4.191 18 C -0.087 4.087 19 C -0.132 4.132 20 C -0.094 4.094 21 C 0.379 3.621 22 O -0.445 6.445 23 O -0.311 6.311 24 C -0.170 4.170 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.278 0.722 30 H 0.268 0.732 31 H 0.161 0.839 32 H 0.188 0.812 33 H 0.177 0.823 34 H 0.296 0.704 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.288 9.696 24.909 27.705 hybrid contribution 0.932 -0.608 -0.286 1.149 sum -6.356 9.088 24.623 27.006 Atomic orbital electron populations 1.21917 0.93183 1.01523 1.02334 1.19284 0.96573 0.97096 0.88623 0.90092 1.20849 1.44078 0.93843 0.96178 0.95934 1.26125 0.93673 1.04973 0.94308 1.70070 1.47365 1.38654 1.02893 0.85769 0.80844 0.77979 0.78628 1.19518 1.21247 1.13578 1.22041 0.79289 0.84681 0.83411 1.90601 1.39816 1.28726 1.86631 1.45146 1.53885 1.30652 0.97039 1.43537 1.57419 1.31600 0.95166 1.17724 0.95828 0.94608 0.82325 1.21119 1.01300 0.96289 1.00347 1.21287 0.97640 0.99789 0.90001 1.21510 0.96892 0.93845 1.00991 1.18739 1.02996 0.98597 0.89107 1.20971 0.75878 0.80800 0.84429 1.90894 1.37850 1.27597 1.88135 1.84502 1.71842 1.58586 1.16209 1.20422 1.04383 1.02190 0.90032 0.94307 0.90216 0.91715 0.92291 0.72172 0.73232 0.83896 0.81200 0.82302 0.70430 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 9.12 71.98 0.66 -3.81 16 2 C 0.01 0.31 2.30 -12.28 -0.03 0.29 16 3 H 0.08 3.07 5.29 -2.39 -0.01 3.06 16 4 C -0.51 -29.30 8.36 25.60 0.21 -29.09 16 5 H 0.02 1.53 7.61 -2.91 -0.02 1.51 16 6 C 0.01 0.35 5.47 84.66 0.46 0.81 16 7 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 8 Si 0.95 40.17 26.99 68.60 1.85 42.02 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 10 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.21 -7.34 6.82 99.48 0.68 -6.67 16 12 C 0.52 21.58 7.27 87.66 0.64 22.22 16 13 O -0.58 -30.43 15.61 -3.04 -0.05 -30.47 16 14 N -0.52 -15.48 6.08 -173.53 -1.05 -16.53 16 15 N -0.55 -15.90 6.45 -51.45 -0.33 -16.23 16 16 C 0.20 4.59 6.71 38.17 0.26 4.85 16 17 C -0.17 -2.82 9.48 22.45 0.21 -2.61 16 18 C -0.07 -0.84 10.02 22.21 0.22 -0.62 16 19 C -0.11 -1.57 9.61 22.55 0.22 -1.36 16 20 C -0.09 -1.85 5.87 -20.12 -0.12 -1.97 16 21 C 0.53 10.78 8.27 70.34 0.58 11.36 16 22 O -0.55 -15.25 17.13 19.94 0.34 -14.91 16 23 O -0.50 -5.88 12.68 -56.24 -0.71 -6.59 16 24 C -0.15 -3.45 9.44 22.68 0.21 -3.23 16 25 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.08 1.86 7.43 -2.39 -0.02 1.84 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.43 9.32 5.95 -213.32 -1.27 8.05 16 30 H 0.43 13.59 8.01 -213.32 -1.71 11.88 16 31 H 0.14 1.84 6.19 -2.91 -0.02 1.82 16 32 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.16 1.46 7.60 -2.91 -0.02 1.44 16 34 H 0.43 1.31 9.11 -74.06 -0.67 0.64 16 35 H 0.12 3.20 7.65 -2.91 -0.02 3.18 16 Total: -1.00 -82.69 309.34 1.36 -81.33 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -2.51 Total: 23.91 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 3.53 Total: -3.15 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -1.09 Total: -92.13 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -0.42 Total: -51.98 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.85 Total: 42.02 kcal Total: -82.69 1.36 -81.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.851 kcal (2) G-P(sol) polarization free energy of solvation -82.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds