Wall clock time and date at job start Tue Mar 31 2020 01:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 N 1.40101 * 120.00125 * 180.02562 * 14 12 2 16 16 C 1.39711 * 120.00056 * 180.02562 * 15 14 12 17 17 C 1.39027 * 119.99981 * 359.72718 * 16 15 14 18 18 C 1.38213 * 120.22465 * 179.71816 * 17 16 15 19 19 C 1.38007 * 120.23727 * 0.55622 * 18 17 16 20 20 C 1.39632 * 119.99711 * 359.72055 * 19 18 17 21 21 C 1.47748 * 120.11331 * 180.02562 * 20 19 18 22 22 O 1.21464 * 119.99704 * 179.97438 * 21 20 19 23 23 O 1.34708 * 119.99750 * 359.97438 * 21 20 19 24 24 C 1.38631 * 120.00062 * 179.97438 * 16 15 14 25 25 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 27 27 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 30 30 H 0.97002 * 119.99828 * 359.97438 * 15 14 12 31 31 H 1.07998 * 119.88593 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.88114 * 180.25371 * 18 17 16 33 33 H 1.08004 * 120.00215 * 179.74267 * 19 18 17 34 34 H 0.96702 * 116.99441 * 179.97438 * 23 21 20 35 35 H 1.08005 * 120.11305 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 7 2.1732 -0.9104 -3.5986 16 6 1.8361 -0.4327 -4.8675 17 6 1.0330 0.6950 -4.9949 18 6 0.7014 1.1750 -6.2479 19 6 1.1557 0.5317 -7.3812 20 6 1.9582 -0.6050 -7.2644 21 6 2.4464 -1.2954 -8.4760 22 8 3.1447 -2.2838 -8.3719 23 8 2.1171 -0.8287 -9.6959 24 6 2.2982 -1.0861 -5.9995 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7006 1.1552 3.4844 29 1 1.1493 0.5391 -2.5435 30 1 2.7309 -1.6991 -3.5097 31 1 0.6704 1.2000 -4.1118 32 1 0.0805 2.0538 -6.3404 33 1 0.8909 0.9076 -8.3584 34 1 2.4605 -1.3137 -10.4588 35 1 2.9193 -1.9644 -5.9026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:07 Heat of formation + Delta-G solvation = -67.092158 kcal Electronic energy + Delta-G solvation = -20419.741946 eV Core-core repulsion = 16997.955264 eV Total energy + Delta-G solvation = -3421.786681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62227 -39.57677 -38.54889 -36.32049 -35.60211 -33.91385 -32.08687 -31.40344 -30.45458 -27.92158 -25.26166 -25.04692 -22.93220 -22.50743 -21.14784 -19.96013 -18.56629 -18.02884 -17.04883 -16.34080 -16.23644 -16.05454 -15.83984 -15.09377 -14.58700 -14.54602 -14.45669 -13.84678 -13.53465 -13.42938 -13.21265 -12.65660 -12.00034 -11.89255 -11.73964 -11.50852 -11.35363 -11.11252 -10.85886 -10.82486 -10.79017 -10.40207 -10.08033 -9.25637 -9.23971 -9.12669 -8.94987 -8.46660 -7.14122 -6.13977 -4.18195 0.53120 1.35015 2.21702 2.39286 2.83091 3.30994 3.33856 3.39656 3.44223 3.70859 4.35047 4.47940 4.67303 4.75837 5.00515 5.07282 5.19735 5.35449 5.52499 5.62962 5.81830 6.05497 6.11035 6.22802 6.28764 6.45418 6.54873 6.66090 6.74188 7.06095 7.31719 7.60453 7.64816 7.67842 7.92307 7.98908 8.22167 8.90225 9.01198 9.47961 10.93568 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043232 B = 0.003115 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.508894 B = 8987.103420 C = 9547.601480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.044 3.956 3 H 0.058 0.942 4 C -0.506 4.506 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.520 3.480 13 O -0.542 6.542 14 N -0.542 5.542 15 N -0.540 5.540 16 C 0.219 3.781 17 C -0.169 4.169 18 C -0.076 4.076 19 C -0.130 4.130 20 C -0.077 4.077 21 C 0.528 3.472 22 O -0.513 6.513 23 O -0.511 6.511 24 C -0.135 4.135 25 H 0.034 0.966 26 H 0.098 0.902 27 H 0.013 0.987 28 H 0.263 0.737 29 H 0.417 0.583 30 H 0.433 0.567 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.413 0.587 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.281 2.768 -20.196 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.021 3.979 3 H 0.076 0.924 4 C -0.544 4.544 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.415 6.415 14 N -0.292 5.292 15 N -0.262 5.262 16 C 0.112 3.888 17 C -0.193 4.193 18 C -0.095 4.095 19 C -0.151 4.151 20 C -0.079 4.079 21 C 0.373 3.627 22 O -0.403 6.403 23 O -0.323 6.323 24 C -0.159 4.159 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.258 0.742 30 H 0.276 0.724 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.271 0.729 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.861 2.173 -19.349 19.559 hybrid contribution 0.454 -0.670 0.267 0.852 sum -1.407 1.503 -19.082 19.192 Atomic orbital electron populations 1.21819 0.96132 1.00230 1.01273 1.18887 0.94348 0.96950 0.87724 0.92400 1.21057 1.31528 1.13171 0.88684 0.90659 1.24934 0.94927 0.95030 0.99155 1.69842 1.36659 1.22954 1.23945 0.86449 0.79303 0.79716 0.81363 1.20105 1.21267 1.20116 1.22575 0.79025 0.84978 0.82421 1.90563 1.38175 1.26885 1.85914 1.45768 1.55100 1.30877 0.97406 1.43488 1.56189 1.31223 0.95260 1.17564 0.94299 0.93382 0.83568 1.20790 1.02287 0.97497 0.98698 1.20855 0.98296 0.99135 0.91223 1.21135 0.99094 0.95417 0.99410 1.18579 1.02146 0.97611 0.89525 1.20962 0.76721 0.81522 0.83512 1.90896 1.35988 1.25865 1.87506 1.84564 1.72353 1.58851 1.16537 1.20415 1.04104 1.02165 0.89213 0.94648 0.88373 0.96841 0.92684 0.74153 0.72418 0.85597 0.85005 0.84835 0.72868 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.86 37.16 0.33 -2.61 16 2 C 0.04 1.02 2.64 -92.92 -0.25 0.78 16 3 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 4 C -0.51 -13.80 8.38 -34.44 -0.29 -14.09 16 5 H 0.08 2.17 6.75 -52.49 -0.35 1.82 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -24.14 11.31 55.43 0.63 -23.52 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.52 11.24 7.27 -10.98 -0.08 11.16 16 13 O -0.54 -13.46 15.30 5.56 0.08 -13.38 16 14 N -0.54 -9.07 6.11 31.22 0.19 -8.88 16 15 N -0.54 -8.18 6.45 32.39 0.21 -7.98 16 16 C 0.22 2.82 6.71 -83.83 -0.56 2.26 16 17 C -0.17 -1.88 9.48 -39.30 -0.37 -2.25 16 18 C -0.08 -0.71 10.02 -39.68 -0.40 -1.10 16 19 C -0.13 -1.24 9.61 -39.15 -0.38 -1.62 16 20 C -0.08 -0.87 5.87 -105.01 -0.62 -1.48 16 21 C 0.53 5.85 8.27 34.62 0.29 6.14 16 22 O -0.51 -7.17 17.13 -19.24 -0.33 -7.50 16 23 O -0.51 -3.87 12.68 -40.51 -0.51 -4.39 16 24 C -0.13 -1.67 9.44 -38.95 -0.37 -2.04 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.10 2.34 6.06 -51.93 -0.31 2.02 16 27 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.42 5.88 6.01 -182.59 -1.10 4.78 16 30 H 0.43 6.76 8.01 -182.59 -1.46 5.30 16 31 H 0.13 1.27 6.19 -52.49 -0.32 0.94 16 32 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 33 H 0.13 1.03 7.60 -52.48 -0.40 0.63 16 34 H 0.41 1.26 9.11 45.56 0.42 1.68 16 35 H 0.14 1.71 7.65 -52.48 -0.40 1.31 16 LS Contribution 309.29 15.07 4.66 4.66 Total: -1.00 -32.29 309.29 -7.61 -39.91 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.74 Total: 8.17 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.79 Total: -3.32 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 1.03 Total: -40.37 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.76 Total: -25.27 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.29 -7.61 -39.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.186 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds