Wall clock time and date at job start Tue Mar 31 2020 01:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.50696 * 109.47505 * 120.00678 * 2 1 3 13 13 O 1.21281 * 119.99992 * 119.99863 * 12 2 1 14 14 N 1.34778 * 119.99830 * 299.99869 * 12 2 1 15 15 C 1.46506 * 119.99945 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.46998 * 180.02562 * 15 14 12 17 17 C 1.38623 * 120.32017 * 90.00348 * 16 15 14 18 18 C 1.38593 * 118.48691 * 179.97438 * 17 16 15 19 19 C 1.39347 * 119.05899 * 0.02562 * 18 17 16 20 20 C 1.48062 * 119.72835 * 179.97438 * 19 18 17 21 21 O 1.21435 * 119.99756 * 359.97438 * 20 19 18 22 22 O 1.34676 * 120.00177 * 179.97438 * 20 19 18 23 23 N 1.32748 * 120.54703 * 359.97438 * 19 18 17 24 24 C 1.31508 * 121.63890 * 359.72979 * 23 19 18 25 25 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 26 26 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 27 27 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00160 * 0.02562 * 14 12 2 30 30 H 1.09000 * 109.46973 * 300.00268 * 15 14 12 31 31 H 1.09002 * 109.46843 * 60.00387 * 15 14 12 32 32 H 1.07994 * 120.75745 * 359.94779 * 17 16 15 33 33 H 1.08003 * 120.46977 * 179.97438 * 18 17 16 34 34 H 0.96698 * 117.00291 * 179.97438 * 22 20 19 35 35 H 1.08000 * 119.54878 * 180.28815 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.8265 -2.5250 -4.0047 10 1 1.8156 -0.4272 -5.2205 11 1 3.8015 -1.1178 -4.0118 12 6 2.0324 -0.7105 1.2303 13 8 2.7297 -1.6966 1.1189 14 7 1.7068 -0.2502 2.4545 15 6 2.1948 -0.9412 3.6506 16 6 1.6921 -0.2312 4.8811 17 6 0.4817 -0.5924 5.4520 18 6 0.0560 0.0855 6.5835 19 6 0.8551 1.1012 7.1045 20 6 0.4144 1.8355 8.3124 21 8 -0.6397 1.5519 8.8445 22 8 1.1826 2.8178 8.8210 23 7 2.0081 1.4161 6.5269 24 6 2.4382 0.7852 5.4562 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.6955 1.1524 -3.4842 29 1 1.1489 0.5382 2.5436 30 1 1.8311 -1.9688 3.6503 31 1 3.2848 -0.9416 3.6507 32 1 -0.1163 -1.3837 5.0247 33 1 -0.8820 -0.1694 7.0541 34 1 0.8530 3.2688 9.6103 35 1 3.3838 1.0660 5.0165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592213640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:48 Heat of formation + Delta-G solvation = -96.483699 kcal Electronic energy + Delta-G solvation = -20360.775512 eV Core-core repulsion = 16937.714317 eV Total energy + Delta-G solvation = -3423.061194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.13740 -39.87541 -38.76641 -36.47897 -35.04174 -33.77678 -32.73312 -31.88836 -30.38776 -27.31049 -25.16816 -24.33215 -23.86456 -22.35024 -21.51120 -19.51854 -18.74643 -17.93683 -16.82045 -16.64042 -16.23536 -16.11997 -15.31490 -15.14688 -14.89585 -14.39118 -14.32224 -13.93546 -13.53561 -13.50820 -12.94469 -12.82049 -12.37608 -11.96689 -11.90896 -11.51470 -11.25880 -11.03379 -10.78048 -10.72470 -10.32944 -10.28963 -10.00611 -9.94939 -9.64098 -9.02360 -8.66508 -8.60717 -8.35752 -6.05776 -4.09519 0.06373 0.83918 2.01589 2.49431 3.34251 3.34609 3.37388 3.42936 3.63285 3.85945 3.97441 4.35784 4.45708 4.49133 4.54068 4.65594 4.90366 5.25969 5.27822 5.45923 5.61311 5.63206 5.89162 6.03152 6.15196 6.17994 6.57312 6.77716 6.85132 6.92039 7.24722 7.42861 7.59803 7.71893 7.93586 8.08646 8.36360 8.99047 9.13238 9.56284 11.01637 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040465 B = 0.003023 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.797918 B = 9259.256172 C = 9440.065359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.503 4.503 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.521 3.479 13 O -0.543 6.543 14 N -0.745 5.745 15 C 0.159 3.841 16 C -0.113 4.113 17 C -0.066 4.066 18 C -0.103 4.103 19 C 0.083 3.917 20 C 0.545 3.455 21 O -0.508 6.508 22 O -0.492 6.492 23 N -0.434 5.434 24 C 0.114 3.886 25 H 0.011 0.989 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.397 0.603 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.413 0.587 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 2.171 19.685 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.541 4.541 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.418 6.418 14 N -0.400 5.400 15 C 0.034 3.966 16 C -0.115 4.115 17 C -0.092 4.092 18 C -0.123 4.123 19 C -0.053 4.053 20 C 0.387 3.613 21 O -0.396 6.396 22 O -0.301 6.301 23 N -0.144 5.144 24 C -0.047 4.047 25 H 0.030 0.970 26 H 0.112 0.888 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.231 0.769 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.271 0.729 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.996 1.957 19.637 19.759 hybrid contribution -0.739 -0.366 -0.539 0.985 sum -1.736 1.592 19.098 19.242 Atomic orbital electron populations 1.21753 0.96511 0.99830 1.00987 1.18877 0.94156 0.96879 0.89139 0.92906 1.21103 1.31093 1.12968 0.88984 0.90801 1.24948 0.95053 0.95066 0.99135 1.69855 1.36739 1.23297 1.23714 0.86499 0.79297 0.79705 0.81599 1.20197 1.21374 1.20154 1.22055 0.78339 0.84254 0.84207 1.90544 1.37853 1.26834 1.86582 1.46375 1.55876 1.32853 1.04902 1.20074 0.99722 0.95700 0.81097 1.21446 0.95333 0.97013 0.97722 1.21652 0.95055 0.98749 0.93782 1.22109 1.00511 0.94037 0.95688 1.19965 0.93479 0.96619 0.95286 1.20496 0.80865 0.77355 0.82540 1.90915 1.23375 1.65474 1.59838 1.84692 1.51588 1.47150 1.46720 1.67705 1.12467 1.25572 1.08688 1.22916 0.99835 0.91157 0.90766 0.96985 0.88753 0.94975 0.92858 0.76861 0.90526 0.90327 0.83130 0.83013 0.72879 0.81243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.86 37.16 0.33 -2.61 16 2 C 0.03 0.73 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -13.95 8.38 -34.44 -0.29 -14.24 16 5 H 0.07 2.16 6.75 -52.49 -0.35 1.80 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.79 11.30 55.43 0.63 -24.16 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.52 11.14 7.15 -10.99 -0.08 11.06 16 13 O -0.54 -13.38 15.46 5.56 0.09 -13.30 16 14 N -0.74 -11.59 5.44 -61.47 -0.33 -11.92 16 15 C 0.16 1.97 5.82 -5.19 -0.03 1.94 16 16 C -0.11 -1.14 5.27 -104.35 -0.55 -1.69 16 17 C -0.07 -0.60 9.85 -39.31 -0.39 -0.99 16 18 C -0.10 -0.97 9.63 -39.04 -0.38 -1.35 16 19 C 0.08 0.91 6.75 -83.03 -0.56 0.35 16 20 C 0.55 5.80 8.32 34.76 0.29 6.08 16 21 O -0.51 -6.20 17.11 -19.22 -0.33 -6.53 16 22 O -0.49 -4.17 13.24 -40.43 -0.54 -4.70 16 23 N -0.43 -5.05 10.12 -9.81 -0.10 -5.15 16 24 C 0.11 1.18 10.86 -17.56 -0.19 0.99 16 25 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 26 H 0.09 2.33 6.05 -51.93 -0.31 2.01 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.40 5.50 7.88 -40.82 -0.32 5.18 16 30 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.15 1.22 7.64 -52.48 -0.40 0.82 16 34 H 0.41 1.34 9.11 45.56 0.42 1.76 16 35 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -33.59 314.26 -6.09 -39.68 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.04 Total: 3.33 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.18 Total: 1.54 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.19 Total: -41.23 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.78 Total: -24.53 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.59 -6.09 -39.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592213640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.804 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds