Wall clock time and date at job start Tue Mar 31 2020 01:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.50696 * 109.47505 * 120.00678 * 2 1 3 13 13 O 1.21281 * 119.99992 * 119.99863 * 12 2 1 14 14 N 1.34778 * 119.99830 * 299.99869 * 12 2 1 15 15 C 1.46506 * 119.99945 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.46998 * 180.02562 * 15 14 12 17 17 C 1.38623 * 120.32017 * 90.00348 * 16 15 14 18 18 C 1.38593 * 118.48691 * 179.97438 * 17 16 15 19 19 C 1.39347 * 119.05899 * 0.02562 * 18 17 16 20 20 C 1.48062 * 119.72835 * 179.97438 * 19 18 17 21 21 O 1.21435 * 119.99756 * 359.97438 * 20 19 18 22 22 O 1.34676 * 120.00177 * 179.97438 * 20 19 18 23 23 N 1.32748 * 120.54703 * 359.97438 * 19 18 17 24 24 C 1.31508 * 121.63890 * 359.72979 * 23 19 18 25 25 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 26 26 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 27 27 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00160 * 0.02562 * 14 12 2 30 30 H 1.09000 * 109.46973 * 300.00268 * 15 14 12 31 31 H 1.09002 * 109.46843 * 60.00387 * 15 14 12 32 32 H 1.07994 * 120.75745 * 359.94779 * 17 16 15 33 33 H 1.08003 * 120.46977 * 179.97438 * 18 17 16 34 34 H 0.96698 * 117.00291 * 179.97438 * 22 20 19 35 35 H 1.08000 * 119.54878 * 180.28815 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.8265 -2.5250 -4.0047 10 1 1.8156 -0.4272 -5.2205 11 1 3.8015 -1.1178 -4.0118 12 6 2.0324 -0.7105 1.2303 13 8 2.7297 -1.6966 1.1189 14 7 1.7068 -0.2502 2.4545 15 6 2.1948 -0.9412 3.6506 16 6 1.6921 -0.2312 4.8811 17 6 0.4817 -0.5924 5.4520 18 6 0.0560 0.0855 6.5835 19 6 0.8551 1.1012 7.1045 20 6 0.4144 1.8355 8.3124 21 8 -0.6397 1.5519 8.8445 22 8 1.1826 2.8178 8.8210 23 7 2.0081 1.4161 6.5269 24 6 2.4382 0.7852 5.4562 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.6955 1.1524 -3.4842 29 1 1.1489 0.5382 2.5436 30 1 1.8311 -1.9688 3.6503 31 1 3.2848 -0.9416 3.6507 32 1 -0.1163 -1.3837 5.0247 33 1 -0.8820 -0.1694 7.0541 34 1 0.8530 3.2688 9.6103 35 1 3.3838 1.0660 5.0165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592213640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:48 Heat of formation + Delta-G solvation = -121.276693 kcal Electronic energy + Delta-G solvation = -20361.850616 eV Core-core repulsion = 16937.714317 eV Total energy + Delta-G solvation = -3424.136299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93565 -40.80428 -40.24363 -37.22634 -36.28833 -35.72634 -33.70337 -32.99783 -32.10687 -28.36505 -27.16136 -25.32089 -24.73951 -23.85932 -22.38632 -21.13041 -19.50122 -18.72556 -18.38799 -17.96157 -17.57281 -16.98037 -16.81027 -16.47190 -15.98609 -15.79151 -15.61319 -14.90173 -14.56447 -14.51588 -14.24419 -14.22935 -13.87716 -13.32448 -12.95372 -12.88741 -12.67907 -12.65833 -12.56736 -12.16622 -12.08041 -11.98977 -11.13248 -11.02032 -10.77305 -10.64999 -10.46499 -10.13688 -9.98881 -8.13010 -6.23439 -0.74278 0.09758 1.21426 1.43604 1.44413 1.52980 1.81291 1.95089 2.34157 2.49391 2.80610 3.13462 3.16924 3.48134 3.71606 3.80512 3.92582 4.15073 4.36422 4.50311 4.65743 4.74881 4.79550 4.89379 4.97489 5.04690 5.07963 5.37011 5.40693 5.52691 5.53782 5.77401 5.96855 6.24219 6.51905 6.72583 6.87542 6.92787 7.41992 7.54834 8.92281 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040465 B = 0.003023 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.797918 B = 9259.256172 C = 9440.065359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.529 4.529 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.526 3.474 13 O -0.582 6.582 14 N -0.723 5.723 15 C 0.162 3.838 16 C -0.112 4.112 17 C -0.056 4.056 18 C -0.100 4.100 19 C 0.069 3.931 20 C 0.549 3.451 21 O -0.529 6.529 22 O -0.493 6.493 23 N -0.453 5.453 24 C 0.113 3.887 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.024 0.976 28 H 0.264 0.736 29 H 0.409 0.591 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.434 0.566 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 2.237 20.647 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.002 3.998 3 H 0.059 0.941 4 C -0.568 4.568 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.202 1.202 11 H -0.201 1.201 12 C 0.315 3.685 13 O -0.461 6.461 14 N -0.376 5.376 15 C 0.039 3.961 16 C -0.115 4.115 17 C -0.082 4.082 18 C -0.120 4.120 19 C -0.067 4.067 20 C 0.392 3.608 21 O -0.419 6.419 22 O -0.305 6.305 23 N -0.164 5.164 24 C -0.047 4.047 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.245 0.755 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.190 0.810 33 H 0.184 0.816 34 H 0.296 0.704 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.525 2.075 20.658 20.818 hybrid contribution -0.574 -0.323 -0.730 0.983 sum -2.099 1.752 19.928 20.115 Atomic orbital electron populations 1.21561 0.95099 0.99507 1.01662 1.18810 0.95312 0.95993 0.89698 0.94097 1.21297 1.31480 1.12849 0.91124 0.93104 1.25583 0.95209 0.95748 1.01432 1.69942 1.37008 1.23872 1.24317 0.85679 0.78701 0.78760 0.78917 1.20125 1.20208 1.20137 1.21441 0.78135 0.83621 0.85289 1.90525 1.39736 1.28484 1.87382 1.46024 1.54645 1.32661 1.04319 1.20140 0.99900 0.95761 0.80323 1.21169 0.95994 0.97249 0.97056 1.21888 0.94499 0.98605 0.93206 1.22276 1.00771 0.93380 0.95557 1.20230 0.93679 0.97203 0.95603 1.20478 0.80566 0.77422 0.82369 1.90904 1.24217 1.66244 1.60507 1.84651 1.51363 1.46637 1.47868 1.67711 1.13053 1.26345 1.09324 1.23126 1.00272 0.90906 0.90444 0.92992 0.91305 0.95648 0.92667 0.75532 0.90141 0.90172 0.81044 0.81623 0.70414 0.80076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.86 71.98 0.64 -4.58 16 2 C 0.02 1.11 2.64 -12.29 -0.03 1.07 16 3 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.53 -29.79 8.38 25.60 0.21 -29.58 16 5 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -50.45 11.30 21.45 0.24 -50.21 16 8 Si 0.95 44.14 29.54 68.60 2.03 46.16 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 C 0.53 22.19 7.15 87.66 0.63 22.82 16 13 O -0.58 -28.83 15.46 -3.03 -0.05 -28.88 16 14 N -0.72 -21.18 5.44 -466.78 -2.54 -23.72 16 15 C 0.16 3.70 5.82 85.63 0.50 4.20 16 16 C -0.11 -2.00 5.27 -19.69 -0.10 -2.11 16 17 C -0.06 -0.85 9.85 22.45 0.22 -0.63 16 18 C -0.10 -1.64 9.63 22.62 0.22 -1.42 16 19 C 0.07 1.39 6.75 41.88 0.28 1.67 16 20 C 0.55 10.87 8.32 70.43 0.59 11.46 16 21 O -0.53 -12.20 17.11 20.05 0.34 -11.85 16 22 O -0.49 -7.58 13.24 -55.85 -0.74 -8.32 16 23 N -0.45 -9.80 10.12 -184.95 -1.87 -11.67 16 24 C 0.11 2.12 10.86 84.82 0.92 3.05 16 25 H 0.05 1.78 7.56 -2.39 -0.02 1.76 16 26 H 0.07 3.37 6.05 -2.39 -0.01 3.36 16 27 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.41 10.29 7.88 -92.71 -0.73 9.56 16 30 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 31 H 0.08 1.87 8.09 -2.39 -0.02 1.85 16 32 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.17 2.25 7.64 -2.91 -0.02 2.23 16 34 H 0.43 2.08 9.11 -74.06 -0.67 1.41 16 35 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -72.23 314.26 1.68 -70.55 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -0.25 Total: 10.49 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 4.52 Total: 7.45 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -4.17 Total: -85.60 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -0.44 Total: -49.06 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -72.23 1.68 -70.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592213640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.725 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds