Wall clock time and date at job start Tue Mar 31 2020 01:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50698 * 109.46939 * 119.99737 * 2 1 3 5 5 H 1.08001 * 120.00262 * 120.00494 * 4 2 1 6 6 C 1.37878 * 120.00084 * 299.99702 * 4 2 1 7 7 N 1.31513 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47198 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47470 * 120.00079 * 8 6 4 11 11 H 1.48501 * 109.47057 * 240.00285 * 8 6 4 12 12 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 13 13 O 1.21283 * 120.00363 * 239.99943 * 12 2 1 14 14 N 1.34784 * 119.99988 * 60.00061 * 12 2 1 15 15 C 1.46493 * 119.99864 * 179.72721 * 14 12 2 16 16 C 1.50698 * 109.47082 * 180.02562 * 15 14 12 17 17 C 1.38628 * 120.32640 * 89.99483 * 16 15 14 18 18 C 1.38589 * 118.49263 * 179.97438 * 17 16 15 19 19 C 1.39349 * 119.05518 * 0.02562 * 18 17 16 20 20 C 1.48066 * 119.72678 * 179.97438 * 19 18 17 21 21 O 1.21437 * 119.99657 * 359.97438 * 20 19 18 22 22 O 1.34679 * 120.00482 * 180.02562 * 20 19 18 23 23 N 1.32746 * 120.54900 * 359.97438 * 19 18 17 24 24 C 1.31510 * 121.64168 * 359.77719 * 23 19 18 25 25 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 26 26 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 28 28 H 0.97003 * 119.99629 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99339 * 0.02562 * 14 12 2 30 30 H 1.09007 * 109.47196 * 299.99538 * 15 14 12 31 31 H 1.09006 * 109.47678 * 59.99732 * 15 14 12 32 32 H 1.07998 * 120.74924 * 359.96191 * 17 16 15 33 33 H 1.08000 * 120.47165 * 179.97438 * 18 17 16 34 34 H 0.96691 * 117.00378 * 179.97438 * 22 20 19 35 35 H 1.08001 * 119.54606 * 180.26636 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1472 -0.1857 4.8161 11 1 1.1677 -1.5864 4.8165 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7067 -0.2500 -2.4546 15 6 2.2000 -0.9372 -3.6506 16 6 1.6971 -0.2272 -4.8811 17 6 2.4378 0.7973 -5.4499 18 6 1.9397 1.4238 -6.5814 19 6 0.7182 1.0046 -7.1047 20 6 0.1719 1.6638 -8.3127 21 8 0.7878 2.5662 -8.8429 22 8 -1.0085 1.2635 -8.8229 23 7 0.0401 0.0191 -6.5292 24 6 0.4920 -0.5955 -5.4579 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7088 1.1614 3.4844 29 1 1.1494 0.5389 -2.5435 30 1 3.2900 -0.9324 -3.6489 31 1 1.8412 -1.9665 -3.6524 32 1 3.3814 1.1005 -5.0209 33 1 2.4901 2.2259 -7.0504 34 1 -1.3245 1.7241 -9.6121 35 1 -0.0856 -1.3961 -5.0198 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592213641.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:51 Heat of formation + Delta-G solvation = -96.599588 kcal Electronic energy + Delta-G solvation = -20362.150821 eV Core-core repulsion = 16939.084601 eV Total energy + Delta-G solvation = -3423.066220 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.13704 -39.87509 -38.76611 -36.47891 -35.04204 -33.77465 -32.73368 -31.88726 -30.38978 -27.31090 -25.16760 -24.32375 -23.87250 -22.34865 -21.51262 -19.51893 -18.74593 -17.93711 -16.83078 -16.63424 -16.22355 -16.11937 -15.31737 -15.14064 -14.95230 -14.43122 -14.22093 -13.92459 -13.53789 -13.49953 -13.02754 -12.80973 -12.27221 -12.04300 -11.91159 -11.51184 -11.25904 -11.05430 -10.76313 -10.69735 -10.33073 -10.28793 -10.00664 -9.94857 -9.64016 -9.00069 -8.67089 -8.60262 -8.36590 -6.06241 -4.09651 0.06349 0.83869 2.01547 2.49412 3.30516 3.34348 3.38436 3.46551 3.63224 3.85997 3.97468 4.35752 4.45781 4.49066 4.53998 4.65477 4.90323 5.26205 5.27487 5.45881 5.61140 5.63201 5.88969 6.03149 6.15179 6.18089 6.58124 6.78400 6.85422 6.92234 7.24789 7.43002 7.59828 7.72013 7.93666 8.08535 8.36255 8.99771 9.13244 9.56282 11.01349 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040520 B = 0.003029 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.843913 B = 9242.385295 C = 9446.959704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.501 4.501 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.521 3.479 13 O -0.543 6.543 14 N -0.745 5.745 15 C 0.159 3.841 16 C -0.113 4.113 17 C -0.067 4.067 18 C -0.103 4.103 19 C 0.083 3.917 20 C 0.545 3.455 21 O -0.508 6.508 22 O -0.492 6.492 23 N -0.434 5.434 24 C 0.114 3.886 25 H 0.012 0.988 26 H 0.032 0.968 27 H 0.093 0.907 28 H 0.260 0.740 29 H 0.397 0.603 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.413 0.587 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 2.106 -19.716 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.540 4.540 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.311 3.689 13 O -0.418 6.418 14 N -0.400 5.400 15 C 0.034 3.966 16 C -0.115 4.115 17 C -0.093 4.093 18 C -0.124 4.124 19 C -0.053 4.053 20 C 0.387 3.613 21 O -0.396 6.396 22 O -0.301 6.301 23 N -0.144 5.144 24 C -0.046 4.046 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.231 0.769 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.271 0.729 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.875 1.287 -19.674 19.805 hybrid contribution 0.555 0.592 0.554 0.982 sum -1.321 1.879 -19.120 19.258 Atomic orbital electron populations 1.21747 0.96456 0.99887 1.00978 1.18886 0.94204 0.96850 0.89171 0.92949 1.21184 1.30995 1.12846 0.88953 0.90690 1.24956 0.95092 0.95062 0.99160 1.69879 1.37093 1.23114 1.23491 0.86401 0.78636 0.79781 0.82457 1.19539 1.21052 1.21038 1.22058 0.78337 0.84263 0.84206 1.90546 1.37859 1.26806 1.86580 1.46376 1.55775 1.32957 1.04904 1.20073 0.99530 0.95891 0.81095 1.21449 0.95806 0.96535 0.97730 1.21653 1.00252 0.93549 0.93814 1.22107 0.94749 0.99824 0.95677 1.19967 0.93540 0.96552 0.95284 1.20499 0.78597 0.79631 0.82528 1.90915 1.59831 1.28934 1.59926 1.84691 1.36380 1.62390 1.46686 1.67706 1.32517 1.05470 1.08736 1.22918 0.93007 0.97990 0.90724 0.96936 0.94907 0.88818 0.92983 0.76863 0.90525 0.90330 0.83122 0.83013 0.72880 0.81252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.87 37.16 0.33 -2.61 16 2 C 0.03 0.72 2.64 -92.93 -0.25 0.47 16 3 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.50 -13.89 8.37 -34.44 -0.29 -14.18 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.52 11.12 7.15 -10.98 -0.08 11.05 16 13 O -0.54 -13.38 15.46 5.56 0.09 -13.29 16 14 N -0.74 -11.58 5.44 -61.47 -0.33 -11.91 16 15 C 0.16 1.97 5.82 -5.20 -0.03 1.94 16 16 C -0.11 -1.14 5.28 -104.35 -0.55 -1.69 16 17 C -0.07 -0.60 9.85 -39.31 -0.39 -0.99 16 18 C -0.10 -0.97 9.63 -39.04 -0.38 -1.35 16 19 C 0.08 0.91 6.75 -83.03 -0.56 0.35 16 20 C 0.55 5.79 8.32 34.76 0.29 6.08 16 21 O -0.51 -6.20 17.11 -19.22 -0.33 -6.53 16 22 O -0.49 -4.17 13.24 -40.44 -0.54 -4.71 16 23 N -0.43 -5.06 10.12 -9.81 -0.10 -5.16 16 24 C 0.11 1.19 10.86 -17.56 -0.19 1.00 16 25 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.40 5.50 7.88 -40.82 -0.32 5.18 16 30 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 31 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 32 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.15 1.22 7.64 -52.49 -0.40 0.82 16 34 H 0.41 1.35 9.11 45.56 0.42 1.76 16 35 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 314.30 15.07 4.74 4.74 Total: -1.00 -33.65 314.30 -6.09 -39.74 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -3.04 Total: 3.26 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -2.18 Total: 1.56 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.19 Total: -41.21 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.78 Total: -24.53 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.65 -6.09 -39.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592213641.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.864 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds