Wall clock time and date at job start Tue Mar 31 2020 01:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50698 * 109.46939 * 119.99737 * 2 1 3 5 5 H 1.08001 * 120.00262 * 120.00494 * 4 2 1 6 6 C 1.37878 * 120.00084 * 299.99702 * 4 2 1 7 7 N 1.31513 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47198 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47470 * 120.00079 * 8 6 4 11 11 H 1.48501 * 109.47057 * 240.00285 * 8 6 4 12 12 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 13 13 O 1.21283 * 120.00363 * 239.99943 * 12 2 1 14 14 N 1.34784 * 119.99988 * 60.00061 * 12 2 1 15 15 C 1.46493 * 119.99864 * 179.72721 * 14 12 2 16 16 C 1.50698 * 109.47082 * 180.02562 * 15 14 12 17 17 C 1.38628 * 120.32640 * 89.99483 * 16 15 14 18 18 C 1.38589 * 118.49263 * 179.97438 * 17 16 15 19 19 C 1.39349 * 119.05518 * 0.02562 * 18 17 16 20 20 C 1.48066 * 119.72678 * 179.97438 * 19 18 17 21 21 O 1.21437 * 119.99657 * 359.97438 * 20 19 18 22 22 O 1.34679 * 120.00482 * 180.02562 * 20 19 18 23 23 N 1.32746 * 120.54900 * 359.97438 * 19 18 17 24 24 C 1.31510 * 121.64168 * 359.77719 * 23 19 18 25 25 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 26 26 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 28 28 H 0.97003 * 119.99629 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99339 * 0.02562 * 14 12 2 30 30 H 1.09007 * 109.47196 * 299.99538 * 15 14 12 31 31 H 1.09006 * 109.47678 * 59.99732 * 15 14 12 32 32 H 1.07998 * 120.74924 * 359.96191 * 17 16 15 33 33 H 1.08000 * 120.47165 * 179.97438 * 18 17 16 34 34 H 0.96691 * 117.00378 * 179.97438 * 22 20 19 35 35 H 1.08001 * 119.54606 * 180.26636 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1472 -0.1857 4.8161 11 1 1.1677 -1.5864 4.8165 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7067 -0.2500 -2.4546 15 6 2.2000 -0.9372 -3.6506 16 6 1.6971 -0.2272 -4.8811 17 6 2.4378 0.7973 -5.4499 18 6 1.9397 1.4238 -6.5814 19 6 0.7182 1.0046 -7.1047 20 6 0.1719 1.6638 -8.3127 21 8 0.7878 2.5662 -8.8429 22 8 -1.0085 1.2635 -8.8229 23 7 0.0401 0.0191 -6.5292 24 6 0.4920 -0.5955 -5.4579 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7088 1.1614 3.4844 29 1 1.1494 0.5389 -2.5435 30 1 3.2900 -0.9324 -3.6489 31 1 1.8412 -1.9665 -3.6524 32 1 3.3814 1.1005 -5.0209 33 1 2.4901 2.2259 -7.0504 34 1 -1.3245 1.7241 -9.6121 35 1 -0.0856 -1.3961 -5.0198 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592213641.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:50 Heat of formation + Delta-G solvation = -121.446222 kcal Electronic energy + Delta-G solvation = -20363.228252 eV Core-core repulsion = 16939.084601 eV Total energy + Delta-G solvation = -3424.143651 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.93511 -40.80401 -40.24342 -37.22601 -36.28866 -35.72555 -33.70448 -32.99614 -32.11028 -28.36557 -27.16352 -25.31176 -24.75127 -23.85664 -22.38704 -21.13059 -19.50044 -18.72563 -18.39140 -17.97383 -17.55433 -16.98196 -16.81319 -16.46346 -16.03286 -15.85896 -15.46430 -14.90084 -14.63808 -14.51799 -14.24781 -14.23705 -13.81485 -13.36023 -12.96758 -12.90445 -12.65984 -12.63168 -12.56610 -12.16903 -12.08090 -12.00641 -11.13243 -11.00037 -10.77274 -10.65244 -10.46828 -10.13785 -9.98771 -8.13481 -6.23516 -0.74305 0.09727 1.21414 1.40924 1.43666 1.56457 1.81258 1.95050 2.34276 2.49379 2.80592 3.13480 3.16645 3.48127 3.71576 3.80480 3.92474 4.15004 4.36673 4.49915 4.65815 4.74850 4.79553 4.89407 4.97604 5.05420 5.07275 5.37014 5.40724 5.52822 5.53870 5.77509 5.96585 6.23952 6.51961 6.72757 6.87884 6.92815 7.42074 7.54880 8.92313 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040520 B = 0.003029 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.843913 B = 9242.385295 C = 9446.959704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.023 3.977 3 H 0.042 0.958 4 C -0.527 4.527 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.526 3.474 13 O -0.582 6.582 14 N -0.723 5.723 15 C 0.162 3.838 16 C -0.112 4.112 17 C -0.056 4.056 18 C -0.100 4.100 19 C 0.069 3.931 20 C 0.549 3.451 21 O -0.529 6.529 22 O -0.493 6.493 23 N -0.453 5.453 24 C 0.114 3.886 25 H 0.051 0.949 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.264 0.736 29 H 0.409 0.591 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.434 0.566 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 2.485 -20.649 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.002 3.998 3 H 0.060 0.940 4 C -0.565 4.565 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.315 3.685 13 O -0.461 6.461 14 N -0.376 5.376 15 C 0.039 3.961 16 C -0.115 4.115 17 C -0.082 4.082 18 C -0.120 4.120 19 C -0.067 4.067 20 C 0.392 3.608 21 O -0.419 6.419 22 O -0.305 6.305 23 N -0.164 5.164 24 C -0.047 4.047 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.245 0.755 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.189 0.811 33 H 0.184 0.816 34 H 0.296 0.704 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.070 1.702 -20.664 20.837 hybrid contribution 0.564 0.506 0.738 1.058 sum -1.506 2.208 -19.926 20.104 Atomic orbital electron populations 1.21559 0.95136 0.99522 1.01616 1.18814 0.95272 0.96021 0.89713 0.94024 1.21346 1.31383 1.12681 0.91100 0.93146 1.25586 0.95248 0.95742 1.01446 1.69958 1.37340 1.23672 1.24181 0.85569 0.78304 0.78637 0.79533 1.20283 1.20146 1.20139 1.21445 0.78129 0.83624 0.85292 1.90528 1.39766 1.28455 1.87383 1.46024 1.54549 1.32757 1.04318 1.20139 0.99743 0.95917 0.80325 1.21173 0.96121 0.97117 0.97061 1.21890 1.00629 0.92485 0.93239 1.22273 0.94246 0.99939 0.95545 1.20229 0.94211 0.96660 0.95604 1.20480 0.78820 0.79175 0.82358 1.90905 1.60520 1.29860 1.60597 1.84649 1.35446 1.62581 1.47833 1.67712 1.33189 1.06144 1.09367 1.23127 0.93128 0.98044 0.90404 0.93027 0.95639 0.91349 0.92692 0.75530 0.90152 0.90168 0.81052 0.81635 0.70416 0.80066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.87 71.98 0.64 -4.61 16 2 C 0.02 1.10 2.64 -12.29 -0.03 1.07 16 3 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.53 -29.65 8.37 25.60 0.21 -29.43 16 5 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -50.38 11.32 21.45 0.24 -50.13 16 8 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 9 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 C 0.53 22.18 7.15 87.65 0.63 22.81 16 13 O -0.58 -28.88 15.46 -3.04 -0.05 -28.92 16 14 N -0.72 -21.17 5.44 -466.78 -2.54 -23.71 16 15 C 0.16 3.70 5.82 85.63 0.50 4.20 16 16 C -0.11 -2.01 5.28 -19.69 -0.10 -2.11 16 17 C -0.06 -0.86 9.85 22.45 0.22 -0.64 16 18 C -0.10 -1.65 9.63 22.62 0.22 -1.43 16 19 C 0.07 1.39 6.75 41.88 0.28 1.68 16 20 C 0.55 10.87 8.32 70.43 0.59 11.45 16 21 O -0.53 -12.20 17.11 20.04 0.34 -11.86 16 22 O -0.49 -7.57 13.24 -55.88 -0.74 -8.31 16 23 N -0.45 -9.78 10.12 -184.94 -1.87 -11.65 16 24 C 0.11 2.13 10.86 84.82 0.92 3.05 16 25 H 0.05 1.79 7.56 -2.39 -0.02 1.77 16 26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 3.36 6.07 -2.39 -0.01 3.34 16 28 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 29 H 0.41 10.28 7.88 -92.71 -0.73 9.55 16 30 H 0.08 1.85 8.09 -2.38 -0.02 1.83 16 31 H 0.08 1.87 8.09 -2.38 -0.02 1.85 16 32 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.17 2.26 7.64 -2.91 -0.02 2.23 16 34 H 0.43 2.08 9.11 -74.06 -0.67 1.40 16 35 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -72.34 314.30 1.68 -70.66 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -0.25 Total: 10.24 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 4.52 Total: 7.52 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -4.17 Total: -85.50 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -0.44 Total: -49.10 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -72.34 1.68 -70.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592213641.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.789 kcal (2) G-P(sol) polarization free energy of solvation -72.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds