Wall clock time and date at job start Tue Mar 31 2020 01:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.34776 * 120.00348 * 274.99648 * 12 2 1 14 14 O 1.21284 * 119.99546 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00271 * 180.02562 * 13 12 2 16 16 C 1.50707 * 109.47051 * 180.02562 * 15 13 12 17 17 C 1.38625 * 120.32242 * 89.99697 * 16 15 13 18 18 C 1.38581 * 118.49088 * 179.97438 * 17 16 15 19 19 C 1.39347 * 119.06025 * 0.02562 * 18 17 16 20 20 C 1.48059 * 119.73114 * 180.02562 * 19 18 17 21 21 O 1.21434 * 120.00340 * 359.97438 * 20 19 18 22 22 O 1.34677 * 120.00355 * 179.97438 * 20 19 18 23 23 N 1.32751 * 120.54230 * 359.97438 * 19 18 17 24 24 C 1.31508 * 121.64366 * 359.77766 * 23 19 18 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 30 30 H 1.09004 * 109.46842 * 299.99234 * 15 13 12 31 31 H 1.08989 * 109.47687 * 59.99974 * 15 13 12 32 32 H 1.08006 * 120.75049 * 359.95333 * 17 16 15 33 33 H 1.08008 * 120.47265 * 179.97438 * 18 17 16 34 34 H 0.96697 * 117.00274 * 179.97438 * 22 20 19 35 35 H 1.07992 * 119.54732 * 180.26575 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8591 1.1587 2.4114 15 6 2.6496 -0.7284 3.5876 16 6 2.6996 0.2399 4.7413 17 6 1.5991 0.3999 5.5690 18 6 1.6869 1.3001 6.6189 19 6 2.8716 2.0098 6.8048 20 6 2.9818 2.9750 7.9221 21 8 2.0419 3.1459 8.6718 22 8 4.1244 3.6634 8.1072 23 7 3.9027 1.8268 5.9889 24 6 3.8479 0.9755 4.9880 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7173 1.1669 -3.4844 29 1 2.2490 -1.6317 1.1528 30 1 1.9772 -1.5505 3.8327 31 1 3.6488 -1.1203 3.3982 32 1 0.6938 -0.1641 5.3991 33 1 0.8486 1.4503 7.2832 34 1 4.1488 4.2823 8.8497 35 1 4.7085 0.8503 4.3477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221287.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:33 Heat of formation + Delta-G solvation = -98.081059 kcal Electronic energy + Delta-G solvation = -20471.265387 eV Core-core repulsion = 17048.134926 eV Total energy + Delta-G solvation = -3423.130461 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94300 -39.77590 -38.71877 -36.31666 -34.97028 -33.66733 -32.46076 -32.14487 -29.61902 -27.96733 -25.31712 -24.52069 -23.77213 -21.87105 -20.92433 -19.51157 -18.57165 -17.76374 -17.25675 -16.59306 -16.02545 -15.89357 -15.53641 -15.00670 -14.83714 -14.39160 -14.16546 -13.76596 -13.40399 -13.31330 -12.97627 -12.47054 -12.26128 -11.99385 -11.75755 -11.60807 -11.13953 -11.08692 -10.99131 -10.78739 -10.38266 -10.28582 -10.03748 -9.74451 -9.43460 -9.12451 -8.98630 -8.60566 -8.00800 -6.17005 -4.27099 0.34113 1.09881 2.22670 2.68225 3.21928 3.24391 3.28095 3.28895 3.58941 4.04697 4.13270 4.34421 4.53129 4.67796 4.76930 4.86878 5.06342 5.15290 5.33335 5.42030 5.57477 5.57673 5.82924 6.01864 6.18652 6.38972 6.75997 6.89086 7.08414 7.36988 7.45688 7.48300 7.63052 7.79625 7.84730 8.09224 8.56387 8.71155 9.01858 9.40663 10.88917 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040249 B = 0.003081 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.500055 B = 9086.587069 C = 9125.873153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.707 5.707 13 C 0.502 3.498 14 O -0.549 6.549 15 C -0.110 4.110 16 C -0.067 4.067 17 C -0.073 4.073 18 C -0.100 4.100 19 C 0.073 3.927 20 C 0.547 3.453 21 O -0.512 6.512 22 O -0.492 6.492 23 N -0.432 5.432 24 C 0.110 3.890 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.027 0.973 28 H 0.266 0.734 29 H 0.390 0.610 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.411 0.589 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -3.157 16.984 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.355 5.355 13 C 0.286 3.714 14 O -0.427 6.427 15 C -0.151 4.151 16 C -0.069 4.069 17 C -0.099 4.099 18 C -0.120 4.120 19 C -0.062 4.062 20 C 0.390 3.610 21 O -0.400 6.400 22 O -0.302 6.302 23 N -0.143 5.143 24 C -0.050 4.050 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.222 0.778 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.269 0.731 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.187 -1.884 16.897 17.510 hybrid contribution -0.387 -0.963 -0.660 1.229 sum 3.800 -2.847 16.238 16.918 Atomic orbital electron populations 1.22080 0.98455 0.99109 1.00922 1.18755 0.91024 0.93996 0.79911 0.93352 1.21172 1.32754 1.13244 0.90318 0.92067 1.24893 0.94774 0.94922 0.99102 1.69888 1.35744 1.22321 1.24088 0.86498 0.79206 0.79549 0.81781 1.20145 1.21112 1.20133 1.46533 1.64915 1.13603 1.10426 1.20154 0.79230 0.87581 0.84456 1.90709 1.51036 1.15949 1.85040 1.20799 1.04768 0.97696 0.91826 1.20758 0.94558 0.96576 0.95019 1.21478 0.98428 0.96935 0.93014 1.22013 0.97542 0.94487 0.97953 1.19853 0.92219 0.98350 0.95818 1.20523 0.79702 0.78288 0.82516 1.90895 1.39225 1.64592 1.45281 1.84701 1.38285 1.53780 1.53431 1.67624 1.28673 1.14987 1.03013 1.22725 0.97727 0.90901 0.93696 0.96701 0.89149 0.95431 0.92447 0.77786 0.87689 0.87453 0.83629 0.83294 0.73100 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.26 37.16 0.34 -3.20 16 2 C 0.26 6.47 2.56 -69.08 -0.18 6.30 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.54 -13.75 8.72 -34.44 -0.30 -14.05 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.75 5.31 -17.82 -0.09 1.66 16 7 N -0.88 -24.50 11.33 55.43 0.63 -23.87 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.71 -13.43 5.07 -54.93 -0.28 -13.71 16 13 C 0.50 8.90 7.79 -10.99 -0.09 8.81 16 14 O -0.55 -12.33 15.70 5.55 0.09 -12.24 16 15 C -0.11 -1.26 5.85 -29.03 -0.17 -1.43 16 16 C -0.07 -0.83 4.40 -104.35 -0.46 -1.29 16 17 C -0.07 -0.85 9.85 -39.31 -0.39 -1.24 16 18 C -0.10 -1.20 9.63 -39.04 -0.38 -1.58 16 19 C 0.07 1.00 6.75 -83.03 -0.56 0.44 16 20 C 0.55 6.95 8.32 34.76 0.29 7.24 16 21 O -0.51 -7.18 17.11 -19.22 -0.33 -7.51 16 22 O -0.49 -5.07 13.24 -40.43 -0.54 -5.60 16 23 N -0.43 -6.19 10.12 -9.81 -0.10 -6.29 16 24 C 0.11 1.44 10.86 -17.56 -0.19 1.25 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 2.39 6.08 -51.93 -0.32 2.08 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 29 H 0.39 6.16 8.54 -40.82 -0.35 5.81 16 30 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 31 H 0.11 0.94 8.09 -51.94 -0.42 0.52 16 32 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.15 1.54 7.64 -52.48 -0.40 1.14 16 34 H 0.41 1.98 9.11 45.56 0.42 2.40 16 35 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -34.09 316.31 -6.06 -40.16 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -3.12 Total: 6.26 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -2.17 Total: 2.91 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.25 Total: -43.88 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.78 Total: -25.35 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.09 -6.06 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221287.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.922 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds