Wall clock time and date at job start Tue Mar 31 2020 01:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.34776 * 120.00348 * 274.99648 * 12 2 1 14 14 O 1.21284 * 119.99546 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00271 * 180.02562 * 13 12 2 16 16 C 1.50707 * 109.47051 * 180.02562 * 15 13 12 17 17 C 1.38625 * 120.32242 * 89.99697 * 16 15 13 18 18 C 1.38581 * 118.49088 * 179.97438 * 17 16 15 19 19 C 1.39347 * 119.06025 * 0.02562 * 18 17 16 20 20 C 1.48059 * 119.73114 * 180.02562 * 19 18 17 21 21 O 1.21434 * 120.00340 * 359.97438 * 20 19 18 22 22 O 1.34677 * 120.00355 * 179.97438 * 20 19 18 23 23 N 1.32751 * 120.54230 * 359.97438 * 19 18 17 24 24 C 1.31508 * 121.64366 * 359.77766 * 23 19 18 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 30 30 H 1.09004 * 109.46842 * 299.99234 * 15 13 12 31 31 H 1.08989 * 109.47687 * 59.99974 * 15 13 12 32 32 H 1.08006 * 120.75049 * 359.95333 * 17 16 15 33 33 H 1.08008 * 120.47265 * 179.97438 * 18 17 16 34 34 H 0.96697 * 117.00274 * 179.97438 * 22 20 19 35 35 H 1.07992 * 119.54732 * 180.26575 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8591 1.1587 2.4114 15 6 2.6496 -0.7284 3.5876 16 6 2.6996 0.2399 4.7413 17 6 1.5991 0.3999 5.5690 18 6 1.6869 1.3001 6.6189 19 6 2.8716 2.0098 6.8048 20 6 2.9818 2.9750 7.9221 21 8 2.0419 3.1459 8.6718 22 8 4.1244 3.6634 8.1072 23 7 3.9027 1.8268 5.9889 24 6 3.8479 0.9755 4.9880 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7173 1.1669 -3.4844 29 1 2.2490 -1.6317 1.1528 30 1 1.9772 -1.5505 3.8327 31 1 3.6488 -1.1203 3.3982 32 1 0.6938 -0.1641 5.3991 33 1 0.8486 1.4503 7.2832 34 1 4.1488 4.2823 8.8497 35 1 4.7085 0.8503 4.3477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221287.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:33 Heat of formation + Delta-G solvation = -123.800434 kcal Electronic energy + Delta-G solvation = -20472.380663 eV Core-core repulsion = 17048.134926 eV Total energy + Delta-G solvation = -3424.245737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.90211 -40.85797 -40.05972 -37.22596 -36.72861 -34.73428 -34.26833 -33.10968 -31.21226 -29.22044 -27.31613 -25.57840 -24.71566 -23.19748 -22.27516 -21.08326 -19.49191 -18.93997 -18.65718 -17.55427 -17.47057 -17.21741 -16.87900 -16.39181 -15.93798 -15.67735 -15.56779 -14.96498 -14.47523 -14.40658 -14.20325 -14.18439 -13.72101 -13.27584 -12.97695 -12.87566 -12.76791 -12.66825 -12.55442 -12.23833 -12.14266 -12.06853 -11.09059 -11.04340 -10.76201 -10.68523 -10.56630 -10.12974 -9.70571 -8.15802 -6.33344 -0.62458 0.17824 1.26311 1.47035 1.48602 1.56317 1.83972 1.87521 2.36907 2.55682 2.89494 3.15100 3.20528 3.57830 3.80624 3.89407 3.97803 4.14318 4.25450 4.51477 4.69947 4.70680 4.79298 4.93911 4.94769 5.10410 5.14120 5.37679 5.45309 5.50247 5.64370 5.72741 5.93916 6.12993 6.57690 6.75983 6.94291 7.01798 7.35405 7.62810 8.90127 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040249 B = 0.003081 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.500055 B = 9086.587069 C = 9125.873153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.971 3.029 9 H -0.263 1.263 10 H -0.290 1.290 11 H -0.270 1.270 12 N -0.703 5.703 13 C 0.499 3.501 14 O -0.601 6.601 15 C -0.092 4.092 16 C -0.077 4.077 17 C -0.073 4.073 18 C -0.102 4.102 19 C 0.052 3.948 20 C 0.550 3.450 21 O -0.531 6.531 22 O -0.493 6.493 23 N -0.456 5.456 24 C 0.098 3.902 25 H 0.012 0.988 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.409 0.591 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.433 0.567 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -5.464 17.444 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.795 3.205 9 H -0.187 1.187 10 H -0.216 1.216 11 H -0.195 1.195 12 N -0.353 5.353 13 C 0.286 3.714 14 O -0.483 6.483 15 C -0.131 4.131 16 C -0.079 4.079 17 C -0.098 4.098 18 C -0.123 4.123 19 C -0.083 4.083 20 C 0.394 3.606 21 O -0.421 6.421 22 O -0.305 6.305 23 N -0.167 5.167 24 C -0.062 4.062 25 H 0.031 0.969 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.245 0.755 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.189 0.811 33 H 0.180 0.820 34 H 0.295 0.705 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.883 -4.225 17.401 18.560 hybrid contribution -0.567 -0.175 -0.740 0.949 sum 4.316 -4.399 16.661 17.764 Atomic orbital electron populations 1.21896 0.98458 0.99517 0.99414 1.18284 0.90994 0.91833 0.82176 0.98681 1.21565 1.32547 1.13527 0.90766 0.90475 1.25809 0.94944 0.95548 1.02432 1.70053 1.37188 1.24000 1.24586 0.85417 0.78695 0.78741 0.77602 1.18729 1.21589 1.19498 1.46237 1.65110 1.14415 1.09510 1.21191 0.77623 0.87038 0.85506 1.90695 1.53054 1.18630 1.85957 1.20772 1.07291 0.97441 0.87632 1.20925 0.94602 0.96865 0.95510 1.21855 0.99068 0.96556 0.92330 1.22240 0.97463 0.94236 0.98314 1.20161 0.92812 0.99067 0.96247 1.20467 0.79857 0.78178 0.82118 1.90879 1.39916 1.65358 1.45966 1.84655 1.37180 1.54027 1.54635 1.67603 1.29377 1.15880 1.03799 1.23088 0.98778 0.90735 0.93628 0.96900 0.91948 0.93834 0.92672 0.75543 0.83774 0.84010 0.81100 0.81974 0.70518 0.80286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 9.26 71.98 0.67 -5.86 16 2 C 0.27 13.34 2.56 44.25 0.11 13.46 16 3 H 0.00 -0.28 7.58 -2.39 -0.02 -0.30 16 4 C -0.55 -27.62 8.72 25.60 0.22 -27.39 16 5 H 0.08 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.01 0.66 5.31 84.65 0.45 1.11 16 7 N -0.92 -52.11 11.33 21.45 0.24 -51.87 16 8 Si 0.97 40.79 29.54 68.60 2.03 42.82 16 9 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 12 N -0.70 -25.64 5.07 -446.09 -2.26 -27.90 16 13 C 0.50 16.89 7.79 87.66 0.68 17.58 16 14 O -0.60 -27.15 15.70 -3.04 -0.05 -27.19 16 15 C -0.09 -1.75 5.85 29.10 0.17 -1.58 16 16 C -0.08 -1.73 4.40 -19.69 -0.09 -1.82 16 17 C -0.07 -1.53 9.85 22.44 0.22 -1.31 16 18 C -0.10 -2.35 9.63 22.62 0.22 -2.13 16 19 C 0.05 1.40 6.75 41.88 0.28 1.68 16 20 C 0.55 13.76 8.32 70.43 0.59 14.34 16 21 O -0.53 -14.68 17.11 20.05 0.34 -14.34 16 22 O -0.49 -9.79 13.24 -55.86 -0.74 -10.53 16 23 N -0.46 -12.80 10.12 -184.96 -1.87 -14.67 16 24 C 0.10 2.44 10.86 84.82 0.92 3.36 16 25 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 3.39 6.08 -2.38 -0.01 3.38 16 27 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.41 11.71 8.54 -92.71 -0.79 10.92 16 30 H 0.14 1.72 8.09 -2.39 -0.02 1.71 16 31 H 0.14 1.82 8.09 -2.39 -0.02 1.80 16 32 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.16 3.17 7.64 -2.91 -0.02 3.15 16 34 H 0.43 3.73 9.11 -74.06 -0.67 3.05 16 35 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -76.24 316.31 1.82 -74.42 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.32 Total: 17.83 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 4.45 Total: 11.43 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -3.89 Total: -94.44 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -0.44 Total: -52.06 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -76.24 1.82 -74.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221287.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.383 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds