Wall clock time and date at job start Tue Mar 31 2020 01:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 C 1.50703 * 109.47394 * 180.02562 * 15 13 12 17 17 C 1.38622 * 120.32011 * 89.99745 * 16 15 13 18 18 C 1.38589 * 118.48461 * 179.97438 * 17 16 15 19 19 C 1.39348 * 119.05742 * 0.02562 * 18 17 16 20 20 C 1.48074 * 119.72422 * 179.97438 * 19 18 17 21 21 O 1.21425 * 120.00348 * 359.97438 * 20 19 18 22 22 O 1.34684 * 119.99719 * 179.97438 * 20 19 18 23 23 N 1.32748 * 120.54924 * 359.96979 * 19 18 17 24 24 C 1.31500 * 121.63934 * 359.78342 * 23 19 18 25 25 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 26 26 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 27 27 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 28 28 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 29 29 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 30 30 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 31 31 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 32 32 H 1.07995 * 120.75709 * 359.95407 * 17 16 15 33 33 H 1.08003 * 120.46971 * 179.97438 * 18 17 16 34 34 H 0.96703 * 116.99752 * 180.02562 * 22 20 19 35 35 H 1.08000 * 119.55206 * 180.26193 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 6 2.7010 0.2402 -4.7410 17 6 3.8486 0.9789 -4.9841 18 6 3.8541 1.8580 -6.0555 19 6 2.7121 1.9685 -6.8463 20 6 2.7016 2.9036 -7.9944 21 8 3.6853 3.5705 -8.2432 22 8 1.6010 3.0143 -8.7626 23 7 1.6335 1.2423 -6.5790 24 6 1.6030 0.3973 -5.5718 25 1 -0.3633 0.4033 0.9453 26 1 -0.3633 0.6171 -0.8218 27 1 -0.3634 -1.0201 -0.1234 28 1 1.9020 -1.9133 3.4363 29 1 2.2490 -1.6317 -1.1527 30 1 3.6492 -1.1201 -3.3980 31 1 1.9777 -1.5505 -3.8327 32 1 4.7182 0.8721 -4.3528 33 1 4.7309 2.4497 -6.2739 34 1 1.6418 3.6375 -9.5009 35 1 0.7089 -0.1798 -5.3875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:36 Heat of formation + Delta-G solvation = -98.263425 kcal Electronic energy + Delta-G solvation = -20550.805005 eV Core-core repulsion = 17127.666636 eV Total energy + Delta-G solvation = -3423.138369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01216 -39.85905 -38.88053 -36.36931 -35.14430 -33.76501 -32.55130 -32.22490 -30.12260 -28.27155 -24.98437 -24.53440 -23.83967 -21.88901 -20.81798 -19.66381 -18.62842 -17.92128 -17.76757 -16.67428 -16.47260 -15.97723 -15.81248 -15.01338 -14.95379 -14.37408 -13.99360 -13.69280 -13.46679 -13.38057 -13.04442 -12.76978 -12.47693 -12.27164 -11.87535 -11.81079 -11.62638 -11.37953 -11.13983 -10.54617 -10.17917 -10.10912 -9.89540 -9.81758 -9.55850 -9.21621 -9.13620 -8.35914 -8.28270 -6.65768 -4.27332 0.27150 1.02920 2.16594 2.62412 3.07856 3.36523 3.42108 3.50098 3.57723 3.94607 4.05628 4.39144 4.43712 4.60377 4.69611 4.80346 4.98893 5.05501 5.24692 5.30600 5.45529 5.49944 5.76773 5.94638 6.13425 6.30634 6.33643 6.49115 6.61644 6.89931 7.21215 7.30510 7.39430 7.59140 7.73409 8.18097 8.36213 8.62261 8.85817 9.38802 10.72688 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033776 B = 0.003390 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.782509 B = 8256.399933 C = 8458.534344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.244 3.756 3 H 0.040 0.960 4 C -0.627 4.627 5 H 0.063 0.937 6 C 0.046 3.954 7 N -0.889 5.889 8 Si 1.033 2.967 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.274 1.274 12 N -0.700 5.700 13 C 0.503 3.497 14 O -0.550 6.550 15 C -0.109 4.109 16 C -0.068 4.068 17 C -0.072 4.072 18 C -0.099 4.099 19 C 0.075 3.925 20 C 0.547 3.453 21 O -0.511 6.511 22 O -0.493 6.493 23 N -0.433 5.433 24 C 0.110 3.890 25 H 0.059 0.941 26 H 0.029 0.971 27 H 0.043 0.957 28 H 0.271 0.729 29 H 0.394 0.606 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.411 0.589 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 0.647 -20.039 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.140 3.860 3 H 0.058 0.942 4 C -0.664 4.664 5 H 0.081 0.919 6 C -0.162 4.162 7 N -0.521 5.521 8 Si 0.860 3.140 9 H -0.208 1.208 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.348 5.348 13 C 0.287 3.713 14 O -0.429 6.429 15 C -0.150 4.150 16 C -0.071 4.071 17 C -0.098 4.098 18 C -0.119 4.119 19 C -0.061 4.061 20 C 0.389 3.611 21 O -0.399 6.399 22 O -0.302 6.302 23 N -0.143 5.143 24 C -0.051 4.051 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.227 0.773 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.269 0.731 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.156 2.706 -19.210 19.434 hybrid contribution 1.140 -1.438 -0.944 2.064 sum 2.296 1.268 -20.154 20.324 Atomic orbital electron populations 1.22424 0.98857 0.99960 1.00217 1.18995 0.90550 0.94119 0.82298 0.94203 1.22002 1.42207 1.11224 0.90994 0.91923 1.25631 0.92917 1.05878 0.91735 1.70875 1.42838 1.06466 1.31888 0.84188 0.77784 0.75694 0.76349 1.20780 1.20673 1.19966 1.46297 1.64886 1.13794 1.09836 1.20231 0.79010 0.87572 0.84493 1.90697 1.51143 1.15957 1.85099 1.20776 1.04846 0.97772 0.91601 1.20742 0.94495 0.96406 0.95453 1.21497 0.98647 0.93789 0.95827 1.22028 0.98504 0.97558 0.93849 1.19866 0.92055 0.98343 0.95872 1.20516 0.79989 0.79628 0.80939 1.90898 1.35116 1.43745 1.70116 1.84701 1.40086 1.62539 1.42895 1.67620 1.25629 1.03796 1.17261 1.22705 0.97652 0.94912 0.89813 0.92251 0.95207 0.93748 0.91902 0.77275 0.87477 0.87396 0.83546 0.83228 0.73057 0.81783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.20 37.16 0.34 -3.08 16 2 C 0.24 5.62 2.16 -69.09 -0.15 5.47 16 3 H 0.04 1.01 6.15 -51.93 -0.32 0.69 16 4 C -0.63 -16.37 8.95 -34.44 -0.31 -16.67 16 5 H 0.06 1.70 7.96 -52.48 -0.42 1.28 16 6 C 0.05 1.27 5.19 -17.82 -0.09 1.18 16 7 N -0.89 -25.78 13.70 55.43 0.76 -25.02 16 8 Si 1.03 24.61 26.44 -169.99 -4.50 20.11 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.19 6.14 56.52 0.35 -5.84 16 12 N -0.70 -12.89 5.07 -54.94 -0.28 -13.17 16 13 C 0.50 8.48 7.79 -10.98 -0.09 8.40 16 14 O -0.55 -11.62 15.70 5.56 0.09 -11.54 16 15 C -0.11 -1.19 5.85 -29.03 -0.17 -1.36 16 16 C -0.07 -0.81 4.40 -104.35 -0.46 -1.27 16 17 C -0.07 -0.81 9.85 -39.31 -0.39 -1.19 16 18 C -0.10 -1.15 9.63 -39.04 -0.38 -1.53 16 19 C 0.07 0.97 6.75 -83.02 -0.56 0.41 16 20 C 0.55 6.69 8.32 34.77 0.29 6.98 16 21 O -0.51 -6.97 17.11 -19.21 -0.33 -7.29 16 22 O -0.49 -4.83 13.24 -40.45 -0.54 -5.37 16 23 N -0.43 -5.91 10.12 -9.81 -0.10 -6.01 16 24 C 0.11 1.35 10.86 -17.57 -0.19 1.16 16 25 H 0.06 1.35 5.47 -51.93 -0.28 1.07 16 26 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.27 7.74 8.73 -40.82 -0.36 7.38 16 29 H 0.39 6.22 8.53 -40.82 -0.35 5.88 16 30 H 0.11 0.91 8.09 -51.92 -0.42 0.49 16 31 H 0.11 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.15 1.50 7.64 -52.48 -0.40 1.10 16 34 H 0.41 1.81 9.11 45.56 0.42 2.22 16 35 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -34.58 312.86 -5.42 -40.00 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.09 Total: 5.08 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.15 Total: -1.51 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.38 Total: -44.20 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.78 Total: -24.20 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -4.50 Total: 20.11 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.58 -5.42 -40.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.267 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds