Wall clock time and date at job start Tue Mar 31 2020 01:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.47163 * 2 1 4 4 C 1.50701 * 109.47177 * 240.00234 * 2 1 3 5 5 H 1.08007 * 120.00085 * 275.00709 * 4 2 1 6 6 C 1.37880 * 120.00054 * 95.00822 * 4 2 1 7 7 N 1.31515 * 119.99713 * 184.96110 * 6 4 2 8 8 Si 1.86795 * 120.00177 * 4.95334 * 6 4 2 9 9 H 1.48503 * 109.46968 * 84.91700 * 8 6 4 10 10 H 1.48499 * 109.47229 * 204.91853 * 8 6 4 11 11 H 1.48506 * 109.47200 * 324.92205 * 8 6 4 12 12 N 1.46494 * 109.47217 * 119.99910 * 2 1 3 13 13 C 1.46507 * 119.99864 * 60.00053 * 12 2 1 14 14 C 1.34780 * 120.00284 * 240.00003 * 12 2 1 15 15 O 1.21514 * 119.99716 * 5.81358 * 14 12 2 16 16 C 1.48167 * 119.99789 * 185.81849 * 14 12 2 17 17 C 1.39255 * 119.65226 * 186.25451 * 16 14 12 18 18 C 1.39787 * 118.89602 * 179.77593 * 17 16 14 19 19 C 1.48046 * 120.89486 * 180.23987 * 18 17 16 20 20 O 1.21436 * 119.99915 * 0.25589 * 19 18 17 21 21 O 1.34664 * 120.00333 * 180.25154 * 19 18 17 22 22 C 1.39852 * 118.21742 * 0.48548 * 18 17 16 23 23 C 1.38505 * 119.18101 * 359.75507 * 22 18 17 24 24 N 1.31465 * 121.03710 * 359.97438 * 23 22 18 25 25 H 1.09002 * 109.46728 * 54.93428 * 1 2 3 26 26 H 1.08999 * 109.46847 * 294.93657 * 1 2 3 27 27 H 1.08996 * 109.47027 * 174.93332 * 1 2 3 28 28 H 0.96996 * 119.99811 * 179.97438 * 7 6 4 29 29 H 1.09009 * 109.46953 * 95.87545 * 13 12 2 30 30 H 1.09000 * 109.47380 * 215.87351 * 13 12 2 31 31 H 1.09001 * 109.47101 * 335.87754 * 13 12 2 32 32 H 1.08004 * 120.54649 * 0.02562 * 17 16 14 33 33 H 0.96707 * 117.00242 * 180.02562 * 21 19 18 34 34 H 1.07993 * 120.41437 * 179.77143 * 22 18 17 35 35 H 1.07995 * 119.48128 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2292 6 6 2.3604 0.0122 -2.3580 7 7 2.7053 -0.6131 -3.4624 8 14 2.3150 1.8792 -2.3170 9 1 3.6018 2.3940 -1.7839 10 1 2.1051 2.3995 -3.6919 11 1 1.2019 2.3281 -1.4424 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0000 1.1541 1.9474 16 6 3.3929 -0.7662 3.2243 17 6 4.0829 -0.0616 4.2075 18 6 4.6383 -0.7663 5.2794 19 6 5.3762 -0.0612 6.3519 20 8 5.5015 1.1459 6.3102 21 8 5.9084 -0.7585 7.3737 22 6 4.4828 -2.1558 5.3089 23 6 3.7858 -2.7792 4.2871 24 7 3.2713 -2.0854 3.2960 25 1 -0.3633 0.5904 -0.8412 26 1 -0.3633 0.4333 0.9319 27 1 -0.3633 -1.0236 -0.0908 28 1 2.9357 -0.1048 -4.2558 29 1 2.4666 -2.7353 1.0638 30 1 1.5216 -2.2603 2.4956 31 1 0.7419 -2.3277 0.8969 32 1 4.1837 1.0119 4.1449 33 1 6.3808 -0.2543 8.0503 34 1 4.9007 -2.7357 6.1185 35 1 3.6625 -3.8519 4.3052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:15 Heat of formation + Delta-G solvation = -67.686071 kcal Electronic energy + Delta-G solvation = -21294.322213 eV Core-core repulsion = 17872.509778 eV Total energy + Delta-G solvation = -3421.812435 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08192 -40.01697 -38.53144 -36.49054 -35.55831 -33.37460 -32.46520 -31.61160 -30.06198 -26.33482 -25.69542 -25.26611 -24.46492 -22.32748 -21.15680 -19.15198 -18.38559 -17.61087 -17.20742 -16.59479 -16.04619 -16.03220 -15.70416 -15.07604 -15.03788 -14.67980 -14.05636 -13.67743 -13.52445 -13.12201 -12.56213 -12.38629 -12.25645 -12.17551 -11.98999 -11.70338 -11.40924 -11.11343 -11.04651 -10.68238 -10.45986 -10.23867 -9.88773 -9.76636 -9.38110 -9.26662 -9.07897 -8.60667 -7.67383 -6.16841 -4.19034 0.21371 0.65936 2.18334 2.48368 3.06406 3.31776 3.39192 3.46257 3.59414 3.91143 4.18235 4.37504 4.38938 4.60237 4.74165 4.85780 5.15289 5.25917 5.42882 5.58857 5.73448 6.00281 6.04081 6.16544 6.26234 6.36908 6.43054 6.55837 6.67122 6.92206 7.06545 7.40775 7.46931 7.57506 7.63066 8.10065 8.46689 8.77603 8.87070 9.45200 10.94994 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026508 B = 0.004602 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.015321 B = 6082.476183 C = 6572.620575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.220 3.780 3 H 0.065 0.935 4 C -0.524 4.524 5 H 0.080 0.920 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.873 3.127 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.262 1.262 12 N -0.562 5.562 13 C 0.098 3.902 14 C 0.552 3.448 15 O -0.548 6.548 16 C 0.092 3.908 17 C -0.056 4.056 18 C -0.092 4.092 19 C 0.530 3.470 20 O -0.499 6.499 21 O -0.509 6.509 22 C -0.104 4.104 23 C 0.085 3.915 24 N -0.420 5.420 25 H 0.057 0.943 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.267 0.733 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.162 0.838 33 H 0.418 0.582 34 H 0.152 0.848 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.583 -5.404 20.172 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.120 3.880 3 H 0.083 0.917 4 C -0.562 4.562 5 H 0.098 0.902 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.699 3.301 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.187 1.187 12 N -0.290 5.290 13 C -0.046 4.046 14 C 0.337 3.663 15 O -0.427 6.427 16 C -0.046 4.046 17 C -0.077 4.077 18 C -0.101 4.101 19 C 0.373 3.627 20 O -0.386 6.386 21 O -0.322 6.322 22 C -0.125 4.125 23 C -0.073 4.073 24 N -0.133 5.133 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.179 0.821 33 H 0.277 0.723 34 H 0.170 0.830 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.082 -5.051 18.864 19.639 hybrid contribution 0.945 1.503 1.005 2.040 sum 3.027 -3.548 19.870 20.410 Atomic orbital electron populations 1.22215 0.98001 1.01046 0.99280 1.19449 0.91148 0.94904 0.82509 0.91741 1.21116 1.44726 0.95839 0.94533 0.90202 1.24955 0.93736 0.98497 0.95214 1.69885 1.45048 1.36080 1.01670 0.86920 0.79981 0.86080 0.77081 1.19612 1.21288 1.18688 1.48302 1.46559 1.12558 1.21574 1.21870 1.00364 0.81687 1.00644 1.17784 0.80412 0.86297 0.81849 1.90750 1.62412 1.14332 1.75233 1.21573 0.97489 0.89700 0.95843 1.22268 0.91904 1.03068 0.90436 1.19300 1.01710 0.94176 0.94868 1.20686 0.76177 0.85080 0.80751 1.90941 1.56095 1.15190 1.76392 1.84514 1.67407 1.45295 1.34953 1.22665 0.96499 0.93535 0.99778 1.23053 0.93860 1.01019 0.89403 1.68165 1.14933 1.07367 1.22860 0.92429 0.95361 0.92922 0.92350 0.92432 0.90995 0.91992 0.82074 0.72304 0.82988 0.81128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.07 37.16 0.34 -2.77 16 2 C 0.22 5.36 2.28 -69.08 -0.16 5.21 16 3 H 0.06 1.71 4.06 -51.92 -0.21 1.50 16 4 C -0.52 -14.48 8.82 -34.44 -0.30 -14.79 16 5 H 0.08 2.34 7.67 -52.48 -0.40 1.94 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 8 Si 0.87 22.20 26.99 -169.99 -4.59 17.61 16 9 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.26 -6.43 6.81 56.52 0.39 -6.04 16 12 N -0.56 -12.12 2.75 -176.25 -0.49 -12.61 16 13 C 0.10 1.72 8.16 59.85 0.49 2.21 16 14 C 0.55 11.75 7.65 -12.18 -0.09 11.66 16 15 O -0.55 -13.33 15.68 5.35 0.08 -13.24 16 16 C 0.09 1.55 6.56 -83.05 -0.54 1.01 16 17 C -0.06 -0.84 9.19 -38.62 -0.36 -1.19 16 18 C -0.09 -1.08 5.91 -104.69 -0.62 -1.70 16 19 C 0.53 5.82 8.30 34.75 0.29 6.11 16 20 O -0.50 -7.12 17.23 -19.22 -0.33 -7.45 16 21 O -0.51 -3.51 12.78 -40.39 -0.52 -4.03 16 22 C -0.10 -0.94 9.71 -38.88 -0.38 -1.32 16 23 C 0.09 0.84 11.17 -17.61 -0.20 0.65 16 24 N -0.42 -5.97 6.15 -9.85 -0.06 -6.03 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.04 6.87 -51.93 -0.36 0.68 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.06 1.04 7.96 -51.92 -0.41 0.63 16 30 H 0.07 1.09 5.85 -51.93 -0.30 0.79 16 31 H 0.06 1.06 6.54 -51.93 -0.34 0.73 16 32 H 0.16 2.59 7.34 -52.48 -0.39 2.21 16 33 H 0.42 1.01 9.11 45.56 0.42 1.42 16 34 H 0.15 0.89 7.70 -52.49 -0.40 0.49 16 35 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -35.15 304.61 -4.99 -40.14 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -2.82 Total: -0.27 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -1.63 Total: 7.28 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.23 Total: -44.63 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.76 Total: -24.72 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.59 Total: 17.61 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.15 -4.99 -40.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.548 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds