Wall clock time and date at job start Tue Mar 31 2020 01:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.47163 * 2 1 4 4 C 1.50701 * 109.47177 * 240.00234 * 2 1 3 5 5 H 1.08007 * 120.00085 * 275.00709 * 4 2 1 6 6 C 1.37880 * 120.00054 * 95.00822 * 4 2 1 7 7 N 1.31515 * 119.99713 * 184.96110 * 6 4 2 8 8 Si 1.86795 * 120.00177 * 4.95334 * 6 4 2 9 9 H 1.48503 * 109.46968 * 84.91700 * 8 6 4 10 10 H 1.48499 * 109.47229 * 204.91853 * 8 6 4 11 11 H 1.48506 * 109.47200 * 324.92205 * 8 6 4 12 12 N 1.46494 * 109.47217 * 119.99910 * 2 1 3 13 13 C 1.46507 * 119.99864 * 60.00053 * 12 2 1 14 14 C 1.34780 * 120.00284 * 240.00003 * 12 2 1 15 15 O 1.21514 * 119.99716 * 5.81358 * 14 12 2 16 16 C 1.48167 * 119.99789 * 185.81849 * 14 12 2 17 17 C 1.39255 * 119.65226 * 186.25451 * 16 14 12 18 18 C 1.39787 * 118.89602 * 179.77593 * 17 16 14 19 19 C 1.48046 * 120.89486 * 180.23987 * 18 17 16 20 20 O 1.21436 * 119.99915 * 0.25589 * 19 18 17 21 21 O 1.34664 * 120.00333 * 180.25154 * 19 18 17 22 22 C 1.39852 * 118.21742 * 0.48548 * 18 17 16 23 23 C 1.38505 * 119.18101 * 359.75507 * 22 18 17 24 24 N 1.31465 * 121.03710 * 359.97438 * 23 22 18 25 25 H 1.09002 * 109.46728 * 54.93428 * 1 2 3 26 26 H 1.08999 * 109.46847 * 294.93657 * 1 2 3 27 27 H 1.08996 * 109.47027 * 174.93332 * 1 2 3 28 28 H 0.96996 * 119.99811 * 179.97438 * 7 6 4 29 29 H 1.09009 * 109.46953 * 95.87545 * 13 12 2 30 30 H 1.09000 * 109.47380 * 215.87351 * 13 12 2 31 31 H 1.09001 * 109.47101 * 335.87754 * 13 12 2 32 32 H 1.08004 * 120.54649 * 0.02562 * 17 16 14 33 33 H 0.96707 * 117.00242 * 180.02562 * 21 19 18 34 34 H 1.07993 * 120.41437 * 179.77143 * 22 18 17 35 35 H 1.07995 * 119.48128 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2292 6 6 2.3604 0.0122 -2.3580 7 7 2.7053 -0.6131 -3.4624 8 14 2.3150 1.8792 -2.3170 9 1 3.6018 2.3940 -1.7839 10 1 2.1051 2.3995 -3.6919 11 1 1.2019 2.3281 -1.4424 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0000 1.1541 1.9474 16 6 3.3929 -0.7662 3.2243 17 6 4.0829 -0.0616 4.2075 18 6 4.6383 -0.7663 5.2794 19 6 5.3762 -0.0612 6.3519 20 8 5.5015 1.1459 6.3102 21 8 5.9084 -0.7585 7.3737 22 6 4.4828 -2.1558 5.3089 23 6 3.7858 -2.7792 4.2871 24 7 3.2713 -2.0854 3.2960 25 1 -0.3633 0.5904 -0.8412 26 1 -0.3633 0.4333 0.9319 27 1 -0.3633 -1.0236 -0.0908 28 1 2.9357 -0.1048 -4.2558 29 1 2.4666 -2.7353 1.0638 30 1 1.5216 -2.2603 2.4956 31 1 0.7419 -2.3277 0.8969 32 1 4.1837 1.0119 4.1449 33 1 6.3808 -0.2543 8.0503 34 1 4.9007 -2.7357 6.1185 35 1 3.6625 -3.8519 4.3052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:15 Heat of formation + Delta-G solvation = -93.998564 kcal Electronic energy + Delta-G solvation = -21295.463209 eV Core-core repulsion = 17872.509778 eV Total energy + Delta-G solvation = -3422.953431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.10374 -41.08141 -39.91758 -37.33862 -37.21539 -34.90746 -34.01490 -32.84500 -31.69932 -27.79264 -27.28739 -26.66147 -25.73587 -23.36550 -22.52642 -20.61961 -19.34439 -19.20495 -18.58117 -18.08063 -17.26634 -16.95352 -16.91007 -16.53320 -16.32725 -16.12599 -15.46797 -14.85232 -14.70995 -14.54697 -14.43027 -14.23552 -13.88532 -13.29471 -13.20671 -13.05207 -12.89337 -12.71751 -12.57569 -12.33453 -12.04115 -11.84401 -11.39122 -11.23291 -11.21729 -10.81450 -10.40850 -10.34160 -9.39186 -8.38670 -6.42607 -0.72488 -0.37600 1.25644 1.27752 1.32449 1.40918 1.68344 1.78117 2.16662 2.26395 2.70964 2.95358 3.11726 3.51604 3.69746 3.72160 3.91122 4.23129 4.41340 4.55840 4.60153 4.65040 4.70280 4.76285 4.84826 4.93277 5.09577 5.16268 5.35991 5.40675 5.44108 5.50871 5.77424 6.12071 6.54615 6.62029 6.68175 6.82246 7.12818 7.26631 8.76699 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026508 B = 0.004602 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.015321 B = 6082.476183 C = 6572.620575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.218 3.782 3 H 0.041 0.959 4 C -0.519 4.519 5 H 0.054 0.946 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.923 3.077 9 H -0.286 1.286 10 H -0.273 1.273 11 H -0.250 1.250 12 N -0.573 5.573 13 C 0.103 3.897 14 C 0.543 3.457 15 O -0.593 6.593 16 C 0.065 3.935 17 C -0.068 4.068 18 C -0.098 4.098 19 C 0.541 3.459 20 O -0.541 6.541 21 O -0.488 6.488 22 C -0.064 4.064 23 C 0.096 3.904 24 N -0.437 5.437 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.269 0.731 29 H 0.049 0.951 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.135 0.865 33 H 0.440 0.560 34 H 0.201 0.799 35 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -7.452 23.307 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.116 3.884 3 H 0.058 0.942 4 C -0.558 4.558 5 H 0.073 0.927 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.748 3.252 9 H -0.212 1.212 10 H -0.199 1.199 11 H -0.174 1.174 12 N -0.301 5.301 13 C -0.039 4.039 14 C 0.330 3.670 15 O -0.476 6.476 16 C -0.070 4.070 17 C -0.090 4.090 18 C -0.107 4.107 19 C 0.385 3.615 20 O -0.432 6.432 21 O -0.302 6.302 22 C -0.084 4.084 23 C -0.064 4.064 24 N -0.150 5.150 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.303 0.697 34 H 0.218 0.782 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.211 -7.119 22.032 23.259 hybrid contribution 1.020 1.930 0.265 2.200 sum 3.231 -5.189 22.297 23.120 Atomic orbital electron populations 1.22075 0.95371 1.02106 1.00168 1.19271 0.93094 0.93457 0.82539 0.94152 1.21308 1.43803 0.94829 0.95835 0.92739 1.25593 0.94003 1.02128 0.95103 1.69978 1.47110 1.37532 1.02409 0.86122 0.79550 0.81845 0.77708 1.21190 1.19852 1.17352 1.48240 1.47007 1.13946 1.20903 1.21996 0.99967 0.79325 1.02566 1.18482 0.79565 0.86145 0.82794 1.90698 1.63726 1.16453 1.76678 1.20728 1.00152 0.90841 0.95306 1.22031 0.93078 1.02106 0.91774 1.19409 1.01626 0.95469 0.94203 1.20500 0.75566 0.84352 0.81082 1.90942 1.57765 1.17072 1.77415 1.84445 1.66794 1.44670 1.34332 1.23206 0.93282 0.92067 0.99799 1.23911 0.91926 1.02752 0.87767 1.68012 1.16233 1.05987 1.24798 0.92761 0.93433 0.91565 0.92150 0.93189 0.88080 0.91808 0.84696 0.69659 0.78240 0.76304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 9.07 71.98 0.65 -5.15 16 2 C 0.22 10.82 2.28 44.25 0.10 10.92 16 3 H 0.04 2.20 4.06 -2.38 -0.01 2.19 16 4 C -0.52 -29.48 8.82 25.60 0.23 -29.25 16 5 H 0.05 3.30 7.67 -2.91 -0.02 3.28 16 6 C 0.03 1.86 5.47 84.66 0.46 2.32 16 7 N -0.93 -57.48 13.96 21.45 0.30 -57.18 16 8 Si 0.92 46.95 26.99 68.60 1.85 48.80 16 9 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 10 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.25 -12.07 6.81 99.48 0.68 -11.39 16 12 N -0.57 -25.10 2.75 -829.81 -2.28 -27.39 16 13 C 0.10 3.58 8.16 127.77 1.04 4.62 16 14 C 0.54 23.88 7.65 86.88 0.66 24.54 16 15 O -0.59 -30.43 15.68 -3.76 -0.06 -30.49 16 16 C 0.07 2.19 6.56 41.90 0.27 2.47 16 17 C -0.07 -2.07 9.19 22.89 0.21 -1.86 16 18 C -0.10 -2.06 5.91 -19.91 -0.12 -2.18 16 19 C 0.54 10.56 8.30 70.42 0.58 11.15 16 20 O -0.54 -15.18 17.23 20.04 0.35 -14.84 16 21 O -0.49 -4.56 12.78 -55.73 -0.71 -5.27 16 22 C -0.06 -0.81 9.71 22.72 0.22 -0.59 16 23 C 0.10 1.43 11.17 84.81 0.95 2.38 16 24 N -0.44 -11.39 6.15 -185.07 -1.14 -12.53 16 25 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.07 2.55 6.87 -2.39 -0.02 2.53 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.05 1.79 7.96 -2.38 -0.02 1.77 16 30 H 0.10 2.88 5.85 -2.39 -0.01 2.87 16 31 H 0.06 2.14 6.54 -2.39 -0.02 2.12 16 32 H 0.14 4.70 7.34 -2.91 -0.02 4.68 16 33 H 0.44 0.29 9.11 -74.05 -0.67 -0.39 16 34 H 0.20 0.75 7.70 -2.91 -0.02 0.72 16 35 H 0.22 1.15 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -82.01 304.61 4.02 -77.99 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 0.44 Total: 1.52 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 5.27 Total: 19.38 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -3.12 Total: -97.10 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.43 Total: -50.59 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.85 Total: 48.80 kcal Total: -82.01 4.02 -77.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.007 kcal (2) G-P(sol) polarization free energy of solvation -82.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds