Wall clock time and date at job start Tue Mar 31 2020 01:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47495 * 2 1 4 4 C 1.50706 * 109.47068 * 119.99633 * 2 1 3 5 5 H 1.08002 * 120.00202 * 119.99869 * 4 2 1 6 6 C 1.37872 * 119.99935 * 300.00306 * 4 2 1 7 7 N 1.31521 * 119.99971 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00378 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.46972 * 90.00061 * 8 6 4 10 10 H 1.48491 * 109.47343 * 210.00341 * 8 6 4 11 11 H 1.48500 * 109.46715 * 330.00323 * 8 6 4 12 12 N 1.46494 * 109.47517 * 239.99690 * 2 1 3 13 13 C 1.46502 * 119.99908 * 300.00079 * 12 2 1 14 14 C 1.34778 * 120.00283 * 119.99818 * 12 2 1 15 15 O 1.21518 * 119.99620 * 1.42878 * 14 12 2 16 16 C 1.48169 * 120.00068 * 181.42621 * 14 12 2 17 17 C 1.39246 * 119.65095 * 172.70521 * 16 14 12 18 18 C 1.39796 * 118.89385 * 179.71971 * 17 16 14 19 19 C 1.48043 * 120.89206 * 180.28389 * 18 17 16 20 20 O 1.21429 * 120.00518 * 0.26386 * 19 18 17 21 21 O 1.34670 * 120.00075 * 180.26957 * 19 18 17 22 22 C 1.39851 * 118.21500 * 0.53902 * 18 17 16 23 23 C 1.38504 * 119.18191 * 359.74340 * 22 18 17 24 24 N 1.31468 * 121.03560 * 359.97272 * 23 22 18 25 25 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46855 * 300.00354 * 1 2 3 27 27 H 1.09001 * 109.46862 * 60.00469 * 1 2 3 28 28 H 0.96998 * 119.99895 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47517 * 263.88054 * 13 12 2 30 30 H 1.08998 * 109.47090 * 143.87838 * 13 12 2 31 31 H 1.09002 * 109.47441 * 23.88134 * 13 12 2 32 32 H 1.08004 * 120.55211 * 359.97438 * 17 16 14 33 33 H 0.96698 * 117.00501 * 179.97438 * 21 19 18 34 34 H 1.07993 * 120.41149 * 179.75416 * 22 18 17 35 35 H 1.07994 * 119.48304 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8595 3.5567 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9771 1.9955 3.9069 11 1 0.8491 2.1773 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4278 14 6 2.7933 -0.0357 -2.0833 15 8 3.1082 1.1199 -1.8781 16 6 3.2612 -0.7247 -3.3087 17 6 3.9311 -0.0018 -4.2923 18 6 4.3708 -0.6689 -5.4395 19 6 5.0929 0.0550 -6.5100 20 8 5.3148 1.2435 -6.3964 21 8 5.5037 -0.6044 -7.6100 22 6 4.1054 -2.0375 -5.5510 23 6 3.4272 -2.6795 -4.5282 24 7 3.0326 -2.0227 -3.4598 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9031 -0.5278 4.4376 29 1 2.4684 -2.7352 -1.0676 30 1 1.5175 -2.2593 -2.4950 31 1 0.7443 -2.3290 -0.8933 32 1 4.1116 1.0559 -4.1692 33 1 5.9708 -0.0892 -8.2819 34 1 4.4255 -2.5870 -6.4238 35 1 3.2193 -3.7361 -4.6094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:18 Heat of formation + Delta-G solvation = -56.575930 kcal Electronic energy + Delta-G solvation = -21243.819286 eV Core-core repulsion = 17822.488622 eV Total energy + Delta-G solvation = -3421.330664 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12628 -40.05949 -38.57551 -36.51330 -35.65079 -33.46565 -32.49731 -31.63535 -30.14621 -26.37836 -25.69956 -25.17894 -24.53371 -22.38482 -21.32376 -19.25192 -18.41561 -17.59598 -17.10125 -16.53973 -16.08408 -16.06338 -15.75591 -15.27424 -15.04031 -14.73784 -14.25044 -13.71571 -13.52232 -13.13933 -12.91033 -12.32856 -12.26583 -12.19133 -12.01002 -11.75488 -11.67728 -11.14591 -11.11381 -10.69462 -10.30045 -10.13710 -9.87113 -9.59230 -9.41942 -9.32126 -9.02366 -8.62547 -7.72588 -6.13266 -4.14130 0.17329 0.62115 2.15124 2.45705 3.02893 3.24484 3.38152 3.40466 3.53933 3.85865 4.13978 4.34612 4.36218 4.56583 4.70593 4.83382 5.12355 5.20753 5.39259 5.55172 5.69976 6.00854 6.02228 6.12669 6.22384 6.31122 6.37309 6.47425 6.67483 6.85045 7.08743 7.29554 7.44592 7.52703 7.61896 8.13381 8.44889 8.73997 8.89511 9.47012 10.99446 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033296 B = 0.004204 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.738256 B = 6658.654928 C = 7070.050428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.226 3.774 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.080 0.920 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.559 5.559 13 C 0.086 3.914 14 C 0.553 3.447 15 O -0.543 6.543 16 C 0.093 3.907 17 C -0.055 4.055 18 C -0.090 4.090 19 C 0.530 3.470 20 O -0.498 6.498 21 O -0.509 6.509 22 C -0.104 4.104 23 C 0.085 3.915 24 N -0.421 5.421 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.034 0.966 28 H 0.266 0.734 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.162 0.838 33 H 0.418 0.582 34 H 0.153 0.847 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 -4.861 -21.488 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.124 3.876 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.287 5.287 13 C -0.057 4.057 14 C 0.338 3.662 15 O -0.422 6.422 16 C -0.046 4.046 17 C -0.076 4.076 18 C -0.099 4.099 19 C 0.373 3.627 20 O -0.385 6.385 21 O -0.322 6.322 22 C -0.124 4.124 23 C -0.074 4.074 24 N -0.134 5.134 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.180 0.820 33 H 0.277 0.723 34 H 0.170 0.830 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.694 -4.573 -20.132 20.714 hybrid contribution 0.221 1.317 -0.828 1.572 sum 1.915 -3.255 -20.960 21.298 Atomic orbital electron populations 1.22463 0.98782 1.01303 0.99363 1.19420 0.90203 0.95261 0.82684 0.91830 1.21134 1.32755 1.14265 0.88307 0.90208 1.24857 0.95672 0.96576 0.95579 1.69875 1.45195 1.40161 0.97957 0.86923 0.80433 0.83854 0.77547 1.20351 1.22099 1.18758 1.47820 1.46779 1.12605 1.21491 1.22146 1.00561 0.81103 1.01906 1.17721 0.80302 0.85893 0.82319 1.90766 1.58189 1.16749 1.76457 1.21546 0.97317 0.89892 0.95800 1.22255 0.92193 1.02843 0.90301 1.19308 1.02027 0.94451 0.94145 1.20673 0.76118 0.84888 0.81036 1.90942 1.52932 1.16083 1.78585 1.84512 1.70613 1.46753 1.30298 1.22667 0.95963 0.93429 1.00376 1.23096 0.94499 1.00913 0.88854 1.68221 1.14515 1.08245 1.22376 0.92298 0.92999 0.94727 0.92420 0.92785 0.89358 0.91813 0.82010 0.72271 0.82953 0.81074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.66 37.16 0.32 -3.17 16 2 C 0.23 5.53 2.22 -69.08 -0.15 5.38 16 3 H 0.06 1.71 5.96 -51.93 -0.31 1.40 16 4 C -0.53 -14.74 8.95 -34.44 -0.31 -15.05 16 5 H 0.08 2.42 7.89 -52.49 -0.41 2.00 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -27.08 13.96 55.43 0.77 -26.30 16 8 Si 0.88 21.90 24.37 -169.99 -4.14 17.75 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 12 N -0.56 -11.95 2.75 -176.25 -0.49 -12.44 16 13 C 0.09 1.51 8.49 59.85 0.51 2.02 16 14 C 0.55 11.53 7.66 -12.18 -0.09 11.44 16 15 O -0.54 -12.98 15.67 5.35 0.08 -12.90 16 16 C 0.09 1.51 6.62 -83.06 -0.55 0.96 16 17 C -0.06 -0.79 9.19 -38.62 -0.36 -1.15 16 18 C -0.09 -1.02 5.91 -104.69 -0.62 -1.64 16 19 C 0.53 5.62 8.30 34.75 0.29 5.90 16 20 O -0.50 -6.92 17.23 -19.21 -0.33 -7.25 16 21 O -0.51 -3.34 12.78 -40.41 -0.52 -3.86 16 22 C -0.10 -0.89 9.71 -38.88 -0.38 -1.27 16 23 C 0.08 0.80 11.17 -17.61 -0.20 0.60 16 24 N -0.42 -5.73 6.01 -9.85 -0.06 -5.79 16 25 H 0.06 1.19 6.67 -51.93 -0.35 0.84 16 26 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 1.32 5.30 -51.98 -0.28 1.05 16 31 H 0.06 1.11 6.44 -51.93 -0.33 0.78 16 32 H 0.16 2.52 7.34 -52.48 -0.39 2.13 16 33 H 0.42 0.88 9.11 45.56 0.42 1.30 16 34 H 0.15 0.83 7.70 -52.49 -0.40 0.43 16 35 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -35.35 297.94 -4.49 -39.84 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -2.67 Total: 0.36 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.63 Total: 6.10 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.23 Total: -44.53 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.76 Total: -24.01 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.35 -4.49 -39.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.738 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds