Wall clock time and date at job start Tue Mar 31 2020 01:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47495 * 2 1 4 4 C 1.50706 * 109.47068 * 119.99633 * 2 1 3 5 5 H 1.08002 * 120.00202 * 119.99869 * 4 2 1 6 6 C 1.37872 * 119.99935 * 300.00306 * 4 2 1 7 7 N 1.31521 * 119.99971 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00378 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.46972 * 90.00061 * 8 6 4 10 10 H 1.48491 * 109.47343 * 210.00341 * 8 6 4 11 11 H 1.48500 * 109.46715 * 330.00323 * 8 6 4 12 12 N 1.46494 * 109.47517 * 239.99690 * 2 1 3 13 13 C 1.46502 * 119.99908 * 300.00079 * 12 2 1 14 14 C 1.34778 * 120.00283 * 119.99818 * 12 2 1 15 15 O 1.21518 * 119.99620 * 1.42878 * 14 12 2 16 16 C 1.48169 * 120.00068 * 181.42621 * 14 12 2 17 17 C 1.39246 * 119.65095 * 172.70521 * 16 14 12 18 18 C 1.39796 * 118.89385 * 179.71971 * 17 16 14 19 19 C 1.48043 * 120.89206 * 180.28389 * 18 17 16 20 20 O 1.21429 * 120.00518 * 0.26386 * 19 18 17 21 21 O 1.34670 * 120.00075 * 180.26957 * 19 18 17 22 22 C 1.39851 * 118.21500 * 0.53902 * 18 17 16 23 23 C 1.38504 * 119.18191 * 359.74340 * 22 18 17 24 24 N 1.31468 * 121.03560 * 359.97272 * 23 22 18 25 25 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46855 * 300.00354 * 1 2 3 27 27 H 1.09001 * 109.46862 * 60.00469 * 1 2 3 28 28 H 0.96998 * 119.99895 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47517 * 263.88054 * 13 12 2 30 30 H 1.08998 * 109.47090 * 143.87838 * 13 12 2 31 31 H 1.09002 * 109.47441 * 23.88134 * 13 12 2 32 32 H 1.08004 * 120.55211 * 359.97438 * 17 16 14 33 33 H 0.96698 * 117.00501 * 179.97438 * 21 19 18 34 34 H 1.07993 * 120.41149 * 179.75416 * 22 18 17 35 35 H 1.07994 * 119.48304 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8595 3.5567 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9771 1.9955 3.9069 11 1 0.8491 2.1773 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4278 14 6 2.7933 -0.0357 -2.0833 15 8 3.1082 1.1199 -1.8781 16 6 3.2612 -0.7247 -3.3087 17 6 3.9311 -0.0018 -4.2923 18 6 4.3708 -0.6689 -5.4395 19 6 5.0929 0.0550 -6.5100 20 8 5.3148 1.2435 -6.3964 21 8 5.5037 -0.6044 -7.6100 22 6 4.1054 -2.0375 -5.5510 23 6 3.4272 -2.6795 -4.5282 24 7 3.0326 -2.0227 -3.4598 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9031 -0.5278 4.4376 29 1 2.4684 -2.7352 -1.0676 30 1 1.5175 -2.2593 -2.4950 31 1 0.7443 -2.3290 -0.8933 32 1 4.1116 1.0559 -4.1692 33 1 5.9708 -0.0892 -8.2819 34 1 4.4255 -2.5870 -6.4238 35 1 3.2193 -3.7361 -4.6094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:17 Heat of formation + Delta-G solvation = -83.975345 kcal Electronic energy + Delta-G solvation = -21245.007414 eV Core-core repulsion = 17822.488622 eV Total energy + Delta-G solvation = -3422.518791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12688 -41.09552 -39.93781 -37.42252 -37.21934 -34.98496 -34.01736 -32.86011 -31.80056 -27.80796 -27.19859 -26.65753 -25.83297 -23.43867 -22.64939 -20.69025 -19.29182 -19.00211 -18.57159 -18.11524 -17.37584 -16.99207 -16.91057 -16.68729 -16.34063 -16.16271 -15.49634 -15.00252 -14.71243 -14.66388 -14.47690 -14.12931 -13.87253 -13.59837 -13.29056 -13.04687 -12.92585 -12.71348 -12.60525 -12.06870 -12.01899 -11.62879 -11.41401 -11.25185 -11.23157 -10.81083 -10.40659 -10.26925 -9.43418 -8.36062 -6.41396 -0.73528 -0.38013 1.25809 1.27256 1.35713 1.44655 1.67941 1.77496 2.13661 2.27217 2.69546 2.98369 3.02800 3.50480 3.68533 3.71546 3.90322 4.21960 4.41168 4.45534 4.57302 4.59983 4.65576 4.69495 4.84571 4.95249 5.00442 5.14656 5.31432 5.41261 5.43716 5.49601 5.69541 6.15976 6.52013 6.59235 6.66292 6.82760 7.09869 7.26832 8.80143 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033296 B = 0.004204 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.738256 B = 6658.654928 C = 7070.050428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.227 3.773 3 H 0.033 0.967 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.024 3.976 7 N -0.938 5.938 8 Si 0.942 3.058 9 H -0.250 1.250 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.571 5.571 13 C 0.091 3.909 14 C 0.544 3.456 15 O -0.590 6.590 16 C 0.067 3.933 17 C -0.067 4.067 18 C -0.097 4.097 19 C 0.541 3.459 20 O -0.541 6.541 21 O -0.488 6.488 22 C -0.063 4.063 23 C 0.097 3.903 24 N -0.437 5.437 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.269 0.731 29 H 0.043 0.957 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.440 0.560 34 H 0.201 0.799 35 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 -6.744 -24.790 25.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.124 3.876 3 H 0.051 0.949 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.175 4.175 7 N -0.578 5.578 8 Si 0.769 3.231 9 H -0.175 1.175 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.298 5.298 13 C -0.051 4.051 14 C 0.332 3.668 15 O -0.472 6.472 16 C -0.069 4.069 17 C -0.088 4.088 18 C -0.106 4.106 19 C 0.385 3.615 20 O -0.431 6.431 21 O -0.303 6.303 22 C -0.083 4.083 23 C -0.063 4.063 24 N -0.150 5.150 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.139 0.861 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.303 0.697 34 H 0.218 0.782 35 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.958 -6.484 -23.476 24.374 hybrid contribution 0.627 1.714 -0.013 1.825 sum 1.585 -4.770 -23.488 24.020 Atomic orbital electron populations 1.22312 0.96055 1.02556 1.00142 1.19120 0.92252 0.93494 0.82774 0.94866 1.21305 1.31991 1.13150 0.90186 0.93936 1.25652 0.97119 0.99565 0.95148 1.70003 1.47019 1.42135 0.98613 0.85962 0.79985 0.79986 0.77208 1.17487 1.22130 1.18705 1.47880 1.47258 1.13926 1.20751 1.22301 0.99940 0.78816 1.04002 1.18463 0.79213 0.85635 0.83523 1.90713 1.59645 1.18917 1.77887 1.20665 1.00431 0.91172 0.94584 1.22012 0.93221 1.01894 0.91707 1.19413 1.02084 0.95764 0.93313 1.20498 0.75361 0.84117 0.81551 1.90943 1.54679 1.17975 1.79551 1.84443 1.70124 1.46232 1.29460 1.23209 0.92375 0.91775 1.00936 1.23955 0.92614 1.02589 0.87111 1.68003 1.15667 1.06847 1.24531 0.90832 0.93595 0.92414 0.92149 0.93810 0.86137 0.91865 0.84637 0.69651 0.78208 0.76173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.50 8.66 71.98 0.62 -5.88 16 2 C 0.23 11.41 2.22 44.25 0.10 11.51 16 3 H 0.03 1.88 5.96 -2.39 -0.01 1.86 16 4 C -0.53 -30.76 8.95 25.60 0.23 -30.53 16 5 H 0.04 2.72 7.89 -2.91 -0.02 2.70 16 6 C 0.02 1.41 5.45 84.65 0.46 1.87 16 7 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 8 Si 0.94 45.76 24.37 68.60 1.67 47.43 16 9 H -0.25 -11.01 6.87 99.48 0.68 -10.32 16 10 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 11 H -0.26 -12.64 6.53 99.48 0.65 -11.99 16 12 N -0.57 -25.09 2.75 -829.83 -2.28 -27.38 16 13 C 0.09 3.19 8.49 127.77 1.08 4.27 16 14 C 0.54 23.74 7.66 86.88 0.67 24.41 16 15 O -0.59 -30.17 15.67 -3.77 -0.06 -30.23 16 16 C 0.07 2.19 6.62 41.90 0.28 2.46 16 17 C -0.07 -1.96 9.19 22.89 0.21 -1.75 16 18 C -0.10 -1.95 5.91 -19.91 -0.12 -2.07 16 19 C 0.54 10.19 8.30 70.42 0.58 10.77 16 20 O -0.54 -14.83 17.23 20.07 0.35 -14.48 16 21 O -0.49 -4.27 12.78 -55.79 -0.71 -4.98 16 22 C -0.06 -0.74 9.71 22.72 0.22 -0.52 16 23 C 0.10 1.34 11.17 84.81 0.95 2.29 16 24 N -0.44 -10.95 6.01 -185.08 -1.11 -12.07 16 25 H 0.07 2.87 6.67 -2.39 -0.02 2.85 16 26 H 0.05 1.99 3.27 -2.39 -0.01 1.98 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.12 3.41 5.30 -2.49 -0.01 3.39 16 31 H 0.06 2.17 6.44 -2.39 -0.02 2.16 16 32 H 0.14 4.61 7.34 -2.91 -0.02 4.59 16 33 H 0.44 0.06 9.11 -74.06 -0.67 -0.62 16 34 H 0.20 0.58 7.70 -2.91 -0.02 0.56 16 35 H 0.22 0.91 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -83.74 297.94 3.83 -79.91 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 0.40 Total: 3.20 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 5.28 Total: 16.84 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -3.10 Total: -97.70 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.43 Total: -49.69 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.43 kcal Total: -83.74 3.83 -79.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.065 kcal (2) G-P(sol) polarization free energy of solvation -83.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds