Wall clock time and date at job start Tue Mar 31 2020 00:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 C 1.50695 * 109.47017 * 185.00278 * 3 2 1 5 5 O 1.20825 * 120.00211 * 359.97438 * 4 3 2 6 6 O 1.34233 * 120.00116 * 180.02562 * 4 3 2 7 7 N 1.46502 * 109.47241 * 240.00067 * 2 1 3 8 8 C 1.34776 * 120.00195 * 59.99513 * 7 2 1 9 9 O 1.21687 * 119.99977 * 0.02562 * 8 7 2 10 10 C 1.46375 * 119.99998 * 180.02562 * 8 7 2 11 11 H 1.08001 * 120.00090 * 353.94035 * 10 8 7 12 12 C 1.40046 * 119.99661 * 173.94435 * 10 8 7 13 13 N 1.30670 * 120.00362 * 6.14834 * 12 10 8 14 14 Si 1.86807 * 119.99669 * 186.15173 * 12 10 8 15 15 H 1.48498 * 109.47236 * 94.97731 * 14 12 10 16 16 H 1.48502 * 109.46668 * 214.98204 * 14 12 10 17 17 H 1.48502 * 109.46716 * 334.98070 * 14 12 10 18 18 C 1.50698 * 109.47090 * 119.99621 * 2 1 3 19 19 C 1.38228 * 119.61702 * 65.00328 * 18 2 1 20 20 C 1.38628 * 119.16127 * 180.02562 * 19 18 2 21 21 C 1.38671 * 118.41949 * 0.02562 * 20 19 18 22 22 C 1.38186 * 119.16523 * 0.27096 * 21 20 19 23 23 N 1.31851 * 119.61917 * 245.02094 * 18 2 1 24 24 H 1.09002 * 109.46894 * 300.00202 * 1 2 3 25 25 H 1.08997 * 109.47189 * 59.99908 * 1 2 3 26 26 H 1.09002 * 109.47099 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47065 * 304.99526 * 3 2 1 28 28 H 1.08999 * 109.47560 * 64.99739 * 3 2 1 29 29 H 0.96702 * 116.99844 * 179.97438 * 6 4 3 30 30 H 0.97002 * 119.99384 * 240.00174 * 7 2 1 31 31 H 0.97005 * 119.99790 * 180.02562 * 13 12 10 32 32 H 1.07998 * 120.41657 * 359.97438 * 19 18 2 33 33 H 1.07994 * 120.79129 * 180.02562 * 20 19 18 34 34 H 1.08005 * 120.42028 * 180.02562 * 21 20 19 35 35 H 1.07994 * 119.61603 * 179.69944 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5418 1.4444 -0.1239 5 8 4.1427 0.3992 -0.2035 6 8 4.2122 2.6071 -0.1448 7 7 2.0184 -0.6906 -1.1962 8 6 1.6928 -0.2302 -2.4203 9 8 0.9935 0.7594 -2.5320 10 6 2.1803 -0.9206 -3.6154 11 1 2.8791 -1.7384 -3.5193 12 6 1.7406 -0.5205 -4.8834 13 7 0.9912 0.5425 -5.0098 14 14 2.2253 -1.5066 -6.3942 15 1 1.1496 -2.4781 -6.7172 16 1 2.4231 -0.5868 -7.5431 17 1 3.4885 -2.2388 -6.1229 18 6 2.0323 -0.7103 1.2305 19 6 1.7813 -2.0602 1.3904 20 6 2.2473 -2.7040 2.5262 21 6 2.9511 -1.9627 3.4632 22 6 3.1582 -0.6151 3.2380 23 7 2.7059 -0.0370 2.1423 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 1.9815 -0.8419 28 1 1.7516 1.9299 0.9313 29 1 5.1746 2.5577 -0.2253 30 1 2.5761 -1.4793 -1.1071 31 1 0.6864 0.8193 -5.8882 32 1 1.2284 -2.6061 0.6403 33 1 2.0665 -3.7579 2.6777 34 1 3.3292 -2.4317 4.3596 35 1 3.7011 -0.0297 3.9653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592281553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:38 Heat of formation + Delta-G solvation = -87.567068 kcal Electronic energy + Delta-G solvation = -22358.034074 eV Core-core repulsion = 18935.359534 eV Total energy + Delta-G solvation = -3422.674540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56883 -39.25056 -37.68776 -35.46443 -34.62523 -32.47144 -32.30105 -30.70184 -30.01156 -27.81985 -26.06681 -23.88034 -23.27548 -21.59709 -20.55472 -18.70251 -17.64090 -17.35574 -16.58537 -15.97008 -15.76883 -15.51980 -15.10806 -14.97269 -14.31444 -13.90644 -13.58981 -13.20843 -12.93458 -12.87127 -12.44841 -12.07500 -12.01157 -11.67051 -11.40368 -11.20621 -10.99448 -10.93354 -10.80863 -10.69252 -10.41415 -10.19441 -9.78246 -9.68295 -9.24015 -8.85808 -8.82628 -7.52277 -7.50451 -6.18907 -4.62045 1.26540 1.43338 3.09822 3.14201 3.21966 3.25748 3.74456 3.92842 4.13071 4.38869 4.56666 4.80120 4.92086 4.95735 5.19046 5.26684 5.43473 5.60764 5.75116 5.85876 5.91763 6.07341 6.17316 6.19320 6.25479 6.31957 6.42369 6.62545 6.85502 6.99361 7.17533 7.45327 7.92199 8.08671 8.19639 8.35832 8.65746 9.03981 9.54072 10.58679 10.77171 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021433 B = 0.006016 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.105170 B = 4653.504079 C = 5101.721697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.249 3.751 3 C -0.110 4.110 4 C 0.499 3.501 5 O -0.510 6.510 6 O -0.527 6.527 7 N -0.745 5.745 8 C 0.561 3.439 9 O -0.579 6.579 10 C -0.542 4.542 11 H 0.066 0.934 12 C 0.090 3.910 13 N -0.766 5.766 14 Si 0.905 3.095 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.153 3.847 19 C -0.159 4.159 20 C -0.076 4.076 21 C -0.185 4.185 22 C 0.099 3.901 23 N -0.476 5.476 24 H 0.049 0.951 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.127 0.873 28 H 0.099 0.901 29 H 0.397 0.603 30 H 0.385 0.615 31 H 0.267 0.733 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 -3.129 13.722 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.160 3.840 3 C -0.149 4.149 4 C 0.341 3.659 5 O -0.397 6.397 6 O -0.339 6.339 7 N -0.400 5.400 8 C 0.366 3.634 9 O -0.463 6.463 10 C -0.579 4.579 11 H 0.085 0.915 12 C -0.130 4.130 13 N -0.395 5.395 14 Si 0.730 3.270 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.190 1.190 18 C 0.014 3.986 19 C -0.179 4.179 20 C -0.102 4.102 21 C -0.205 4.205 22 C -0.058 4.058 23 N -0.185 5.185 24 H 0.068 0.932 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.145 0.855 28 H 0.117 0.883 29 H 0.254 0.746 30 H 0.217 0.783 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.647 -1.657 13.390 13.592 hybrid contribution 1.198 -1.930 -0.517 2.330 sum 2.845 -3.587 12.873 13.663 Atomic orbital electron populations 1.22229 0.93120 1.02426 1.03576 1.18475 0.93529 0.89208 0.82787 1.21684 0.87786 0.99733 1.05713 1.23206 0.91399 0.80469 0.70809 1.90606 1.70271 1.33220 1.45560 1.84550 1.26010 1.37159 1.86135 1.46217 1.57138 1.32951 1.03711 1.18125 0.80050 0.84105 0.81125 1.90514 1.42155 1.27917 1.85665 1.20867 1.28756 1.18578 0.89671 0.91546 1.25659 0.93490 0.94069 0.99766 1.70012 1.26028 1.19462 1.23983 0.86403 0.79570 0.80038 0.81025 1.19816 1.20493 1.18966 1.21276 0.91905 0.91167 0.94205 1.21940 1.01626 0.95627 0.98711 1.21525 0.95274 1.00070 0.93297 1.22034 1.01703 0.95907 1.00815 1.22642 0.96421 0.92569 0.94183 1.67392 1.08817 1.40355 1.01948 0.93163 0.88347 0.92538 0.85479 0.88301 0.74569 0.78273 0.92178 0.84522 0.85105 0.85309 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.26 37.16 0.31 -2.52 16 2 C 0.25 4.82 0.45 -132.97 -0.06 4.76 16 3 C -0.11 -2.18 4.19 -27.88 -0.12 -2.30 16 4 C 0.50 10.10 7.18 36.00 0.26 10.36 16 5 O -0.51 -11.26 14.44 -18.75 -0.27 -11.53 16 6 O -0.53 -9.12 13.42 -39.27 -0.53 -9.64 16 7 N -0.74 -16.72 3.43 -50.08 -0.17 -16.89 16 8 C 0.56 15.28 7.16 -12.99 -0.09 15.19 16 9 O -0.58 -17.08 11.30 5.20 0.06 -17.02 16 10 C -0.54 -15.22 9.53 -35.63 -0.34 -15.56 16 11 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 12 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 13 N -0.77 -22.37 11.85 55.55 0.66 -21.71 16 14 Si 0.90 20.19 29.56 -169.99 -5.03 15.16 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 C 0.15 2.61 4.63 -82.59 -0.38 2.23 16 19 C -0.16 -2.36 8.73 -39.44 -0.34 -2.70 16 20 C -0.08 -0.92 10.18 -39.28 -0.40 -1.32 16 21 C -0.18 -2.12 10.11 -39.44 -0.40 -2.52 16 22 C 0.10 1.32 11.18 -17.55 -0.20 1.12 16 23 N -0.48 -7.85 7.70 -9.47 -0.07 -7.92 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.10 2.12 6.16 -51.93 -0.32 1.80 16 26 H 0.06 0.96 7.67 -51.93 -0.40 0.56 16 27 H 0.13 2.85 6.31 -51.93 -0.33 2.52 16 28 H 0.10 1.72 7.80 -51.93 -0.40 1.31 16 29 H 0.40 5.08 9.10 45.56 0.41 5.49 16 30 H 0.38 8.39 8.02 -40.82 -0.33 8.06 16 31 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 32 H 0.14 1.94 7.87 -52.49 -0.41 1.52 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 35 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -34.54 301.53 -5.68 -40.22 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -3.01 Total: 15.65 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -1.86 Total: 9.14 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.41 Total: -46.52 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.74 Total: -38.19 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.54 -5.68 -40.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592281553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.350 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds