Wall clock time and date at job start Tue Mar 31 2020 00:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 C 1.50695 * 109.47017 * 185.00278 * 3 2 1 5 5 O 1.20825 * 120.00211 * 359.97438 * 4 3 2 6 6 O 1.34233 * 120.00116 * 180.02562 * 4 3 2 7 7 N 1.46502 * 109.47241 * 240.00067 * 2 1 3 8 8 C 1.34776 * 120.00195 * 59.99513 * 7 2 1 9 9 O 1.21687 * 119.99977 * 0.02562 * 8 7 2 10 10 C 1.46375 * 119.99998 * 180.02562 * 8 7 2 11 11 H 1.08001 * 120.00090 * 353.94035 * 10 8 7 12 12 C 1.40046 * 119.99661 * 173.94435 * 10 8 7 13 13 N 1.30670 * 120.00362 * 6.14834 * 12 10 8 14 14 Si 1.86807 * 119.99669 * 186.15173 * 12 10 8 15 15 H 1.48498 * 109.47236 * 94.97731 * 14 12 10 16 16 H 1.48502 * 109.46668 * 214.98204 * 14 12 10 17 17 H 1.48502 * 109.46716 * 334.98070 * 14 12 10 18 18 C 1.50698 * 109.47090 * 119.99621 * 2 1 3 19 19 C 1.38228 * 119.61702 * 65.00328 * 18 2 1 20 20 C 1.38628 * 119.16127 * 180.02562 * 19 18 2 21 21 C 1.38671 * 118.41949 * 0.02562 * 20 19 18 22 22 C 1.38186 * 119.16523 * 0.27096 * 21 20 19 23 23 N 1.31851 * 119.61917 * 245.02094 * 18 2 1 24 24 H 1.09002 * 109.46894 * 300.00202 * 1 2 3 25 25 H 1.08997 * 109.47189 * 59.99908 * 1 2 3 26 26 H 1.09002 * 109.47099 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47065 * 304.99526 * 3 2 1 28 28 H 1.08999 * 109.47560 * 64.99739 * 3 2 1 29 29 H 0.96702 * 116.99844 * 179.97438 * 6 4 3 30 30 H 0.97002 * 119.99384 * 240.00174 * 7 2 1 31 31 H 0.97005 * 119.99790 * 180.02562 * 13 12 10 32 32 H 1.07998 * 120.41657 * 359.97438 * 19 18 2 33 33 H 1.07994 * 120.79129 * 180.02562 * 20 19 18 34 34 H 1.08005 * 120.42028 * 180.02562 * 21 20 19 35 35 H 1.07994 * 119.61603 * 179.69944 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5418 1.4444 -0.1239 5 8 4.1427 0.3992 -0.2035 6 8 4.2122 2.6071 -0.1448 7 7 2.0184 -0.6906 -1.1962 8 6 1.6928 -0.2302 -2.4203 9 8 0.9935 0.7594 -2.5320 10 6 2.1803 -0.9206 -3.6154 11 1 2.8791 -1.7384 -3.5193 12 6 1.7406 -0.5205 -4.8834 13 7 0.9912 0.5425 -5.0098 14 14 2.2253 -1.5066 -6.3942 15 1 1.1496 -2.4781 -6.7172 16 1 2.4231 -0.5868 -7.5431 17 1 3.4885 -2.2388 -6.1229 18 6 2.0323 -0.7103 1.2305 19 6 1.7813 -2.0602 1.3904 20 6 2.2473 -2.7040 2.5262 21 6 2.9511 -1.9627 3.4632 22 6 3.1582 -0.6151 3.2380 23 7 2.7059 -0.0370 2.1423 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 1.9815 -0.8419 28 1 1.7516 1.9299 0.9313 29 1 5.1746 2.5577 -0.2253 30 1 2.5761 -1.4793 -1.1071 31 1 0.6864 0.8193 -5.8882 32 1 1.2284 -2.6061 0.6403 33 1 2.0665 -3.7579 2.6777 34 1 3.3292 -2.4317 4.3596 35 1 3.7011 -0.0297 3.9653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592281553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:37 Heat of formation + Delta-G solvation = -112.981459 kcal Electronic energy + Delta-G solvation = -22359.136124 eV Core-core repulsion = 18935.359534 eV Total energy + Delta-G solvation = -3423.776591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91573 -40.62331 -39.46113 -37.07664 -36.29991 -34.51315 -33.44788 -32.36513 -31.30017 -29.34503 -28.13029 -25.17664 -24.33735 -23.03500 -22.30011 -20.33623 -19.43403 -18.91138 -17.99958 -17.55559 -17.18917 -16.92562 -16.67207 -16.42358 -15.75015 -15.51674 -14.99602 -14.66787 -14.49554 -14.30887 -14.00293 -13.68339 -13.39191 -13.21774 -12.97828 -12.94389 -12.64541 -12.57271 -12.48015 -12.28697 -12.18289 -12.00171 -11.36934 -10.89458 -10.74195 -10.33388 -9.96274 -9.61021 -9.37696 -8.25349 -6.79654 0.20711 0.43263 1.39409 1.39617 1.49377 1.54722 2.23995 2.31103 2.50642 2.80741 3.13507 3.31534 3.57779 3.79782 3.94734 4.11757 4.25045 4.33473 4.34584 4.55905 4.64072 4.67195 4.77598 4.85186 4.90872 5.01452 5.29375 5.31912 5.34289 5.42129 5.72946 5.84408 5.92705 6.22152 6.33854 6.91623 7.10171 7.17101 7.58000 8.53752 8.71683 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021433 B = 0.006016 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.105170 B = 4653.504079 C = 5101.721697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.245 3.755 3 C -0.108 4.108 4 C 0.497 3.503 5 O -0.531 6.531 6 O -0.522 6.522 7 N -0.734 5.734 8 C 0.552 3.448 9 O -0.610 6.610 10 C -0.576 4.576 11 H 0.072 0.928 12 C 0.037 3.963 13 N -0.814 5.814 14 Si 0.988 3.012 15 H -0.261 1.261 16 H -0.272 1.272 17 H -0.258 1.258 18 C 0.128 3.872 19 C -0.171 4.171 20 C -0.072 4.072 21 C -0.168 4.168 22 C 0.086 3.914 23 N -0.501 5.501 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.418 0.582 30 H 0.387 0.613 31 H 0.274 0.726 32 H 0.134 0.866 33 H 0.165 0.835 34 H 0.170 0.830 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.494 -4.945 15.321 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 C -0.147 4.147 4 C 0.341 3.659 5 O -0.420 6.420 6 O -0.336 6.336 7 N -0.387 5.387 8 C 0.356 3.644 9 O -0.496 6.496 10 C -0.613 4.613 11 H 0.091 0.909 12 C -0.178 4.178 13 N -0.443 5.443 14 Si 0.808 3.192 15 H -0.185 1.185 16 H -0.197 1.197 17 H -0.181 1.181 18 C -0.009 4.009 19 C -0.191 4.191 20 C -0.097 4.097 21 C -0.188 4.188 22 C -0.071 4.071 23 N -0.211 5.211 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.138 0.862 29 H 0.278 0.722 30 H 0.220 0.780 31 H 0.084 0.916 32 H 0.152 0.848 33 H 0.183 0.817 34 H 0.187 0.813 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.781 -3.472 15.026 15.671 hybrid contribution 0.920 -1.333 -0.831 1.820 sum 3.701 -4.804 14.195 15.436 Atomic orbital electron populations 1.22091 0.92822 1.02707 1.02801 1.18570 0.93852 0.88951 0.82928 1.21613 0.87778 1.00048 1.05247 1.23252 0.91624 0.80707 0.70324 1.90584 1.70731 1.34014 1.46654 1.84497 1.27811 1.35739 1.85530 1.45908 1.56318 1.32694 1.03770 1.18275 0.79806 0.83766 0.82589 1.90494 1.43370 1.29115 1.86630 1.21345 1.29661 1.19273 0.91018 0.90943 1.26753 0.92903 0.94955 1.03233 1.70147 1.27448 1.21440 1.25301 0.85148 0.79578 0.78323 0.76116 1.18541 1.19673 1.18120 1.20825 0.94228 0.91994 0.93864 1.22016 1.02223 0.94858 1.00032 1.21940 0.94096 1.01702 0.91998 1.22488 0.99680 0.95051 1.01554 1.23221 0.96224 0.94034 0.93648 1.67277 1.09441 1.41398 1.02985 0.90614 0.92204 0.91697 0.88778 0.86162 0.72222 0.78035 0.91631 0.84792 0.81698 0.81257 0.80607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 8.26 71.98 0.59 -4.90 16 2 C 0.24 9.70 0.45 2.86 0.00 9.70 16 3 C -0.11 -4.40 4.19 29.85 0.13 -4.27 16 4 C 0.50 20.38 7.18 71.23 0.51 20.89 16 5 O -0.53 -23.59 14.44 21.97 0.32 -23.28 16 6 O -0.52 -17.94 13.42 -51.45 -0.69 -18.63 16 7 N -0.73 -33.99 3.43 -430.56 -1.48 -35.47 16 8 C 0.55 31.32 7.16 86.36 0.62 31.93 16 9 O -0.61 -37.93 11.30 -4.31 -0.05 -37.98 16 10 C -0.58 -33.23 9.53 24.83 0.24 -33.00 16 11 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16 12 C 0.04 2.08 5.49 85.30 0.47 2.55 16 13 N -0.81 -49.02 11.85 21.83 0.26 -48.76 16 14 Si 0.99 41.76 29.56 68.60 2.03 43.78 16 15 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 18 C 0.13 4.30 4.63 42.55 0.20 4.50 16 19 C -0.17 -4.82 8.73 22.36 0.20 -4.63 16 20 C -0.07 -1.48 10.18 22.47 0.23 -1.25 16 21 C -0.17 -3.14 10.11 22.36 0.23 -2.91 16 22 C 0.09 2.02 11.18 84.67 0.95 2.97 16 23 N -0.50 -15.81 7.70 -183.89 -1.42 -17.22 16 24 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.06 2.73 6.16 -2.39 -0.01 2.71 16 26 H 0.06 2.26 7.67 -2.39 -0.02 2.24 16 27 H 0.09 4.48 6.31 -2.38 -0.02 4.47 16 28 H 0.12 4.23 7.80 -2.39 -0.02 4.22 16 29 H 0.42 10.32 9.10 -74.06 -0.67 9.64 16 30 H 0.39 17.31 8.02 -92.71 -0.74 16.57 16 31 H 0.27 14.98 8.29 -92.70 -0.77 14.21 16 32 H 0.13 3.72 7.87 -2.91 -0.02 3.70 16 33 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.18 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -77.81 301.53 3.05 -74.76 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: -0.27 Total: 41.21 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 4.35 Total: 21.58 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -2.63 Total: -101.45 kcal Atomic # 8 Polarization: -79.46 SS G_CDS: -0.42 Total: -79.88 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -77.81 3.05 -74.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592281553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.219 kcal (2) G-P(sol) polarization free energy of solvation -77.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds