Wall clock time and date at job start Tue Mar 31 2020 00:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47538 * 2 1 4 4 C 1.50698 * 109.47444 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00079 * 359.97438 * 4 3 2 6 6 O 1.34222 * 119.99943 * 179.97438 * 4 3 2 7 7 N 1.46502 * 109.47129 * 119.99918 * 2 1 3 8 8 C 1.34774 * 119.99907 * 299.99928 * 7 2 1 9 9 O 1.21680 * 120.00271 * 359.97438 * 8 7 2 10 10 C 1.46380 * 119.99562 * 179.97438 * 8 7 2 11 11 H 1.07997 * 120.00108 * 0.02562 * 10 8 7 12 12 C 1.40056 * 119.99693 * 179.97438 * 10 8 7 13 13 N 1.30669 * 119.99625 * 0.02562 * 12 10 8 14 14 Si 1.86790 * 119.99934 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47547 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47484 * 120.00062 * 14 12 10 17 17 H 1.48508 * 109.47223 * 240.00177 * 14 12 10 18 18 C 1.50707 * 109.47004 * 239.99428 * 2 1 3 19 19 C 1.38227 * 119.62059 * 300.02603 * 18 2 1 20 20 C 1.38627 * 119.15702 * 179.74122 * 19 18 2 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61137 * 120.00033 * 18 2 1 24 24 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46890 * 300.00063 * 1 2 3 26 26 H 1.08995 * 109.47137 * 60.00070 * 1 2 3 27 27 H 1.09003 * 109.46701 * 300.00381 * 3 2 1 28 28 H 1.08998 * 109.47087 * 59.99497 * 3 2 1 29 29 H 0.96705 * 117.00119 * 179.97438 * 6 4 3 30 30 H 0.97005 * 120.00154 * 119.99559 * 7 2 1 31 31 H 0.97004 * 119.99591 * 180.02562 * 13 12 10 32 32 H 1.07998 * 120.41916 * 359.95342 * 19 18 2 33 33 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 34 34 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 35 35 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1512 0.3960 -0.0006 6 8 4.2182 2.6048 -0.0013 7 7 2.0183 -0.6906 1.1962 8 6 1.6928 -0.2301 2.4203 9 8 0.9936 0.7595 2.5319 10 6 2.1803 -0.9205 3.6154 11 1 2.8012 -1.7986 3.5163 12 6 1.8424 -0.4417 4.8875 13 7 1.0916 0.6210 5.0073 14 14 2.4650 -1.3222 6.4126 15 1 3.2890 -2.4897 6.0085 16 1 3.2906 -0.3891 7.2207 17 1 1.3100 -1.7884 7.2213 18 6 2.0323 -0.7106 -1.2305 19 6 1.6931 -2.0338 -1.4415 20 6 2.1560 -2.6765 -2.5793 21 6 2.9546 -1.9640 -3.4611 22 6 3.2517 -0.6433 -3.1838 23 7 2.7899 -0.0625 -2.0934 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 5.1839 2.5542 -0.0013 30 1 2.5760 -1.4793 1.1072 31 1 0.8579 0.9529 5.8883 32 1 1.0726 -2.5593 -0.7308 33 1 1.9040 -3.7089 -2.7722 34 1 3.3357 -2.4340 -4.3557 35 1 3.8695 -0.0803 -3.8675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592281554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:40 Heat of formation + Delta-G solvation = -85.015007 kcal Electronic energy + Delta-G solvation = -22366.737411 eV Core-core repulsion = 18944.173537 eV Total energy + Delta-G solvation = -3422.563874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57808 -39.19833 -37.70521 -35.46829 -34.61261 -32.46323 -32.28081 -30.73342 -29.98599 -27.81777 -26.07628 -23.86910 -23.24004 -21.58632 -20.56966 -18.70396 -17.64521 -17.33672 -16.58398 -15.94386 -15.78715 -15.52506 -15.10790 -14.97029 -14.31761 -13.90183 -13.54544 -13.21475 -12.89860 -12.87739 -12.46920 -12.08628 -11.98350 -11.64921 -11.37255 -11.22058 -10.99194 -10.93357 -10.82705 -10.67715 -10.43874 -10.17803 -9.80769 -9.60605 -9.21287 -8.86486 -8.81462 -7.53534 -7.52362 -6.18971 -4.63537 1.28228 1.45981 3.12489 3.13315 3.21808 3.26294 3.74949 3.94214 4.13380 4.41573 4.56188 4.81724 4.93623 4.94824 5.19972 5.28009 5.44305 5.61830 5.75595 5.86805 5.91661 6.05810 6.18279 6.20653 6.25792 6.31751 6.43087 6.64067 6.87601 6.99258 7.19028 7.44180 7.90724 8.07876 8.22245 8.34467 8.68069 9.03010 9.52694 10.57816 10.76206 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021562 B = 0.005976 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.286670 B = 4684.301177 C = 5096.919423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.249 3.751 3 C -0.111 4.111 4 C 0.501 3.499 5 O -0.510 6.510 6 O -0.528 6.528 7 N -0.746 5.746 8 C 0.560 3.440 9 O -0.577 6.577 10 C -0.541 4.541 11 H 0.066 0.934 12 C 0.089 3.911 13 N -0.766 5.766 14 Si 0.905 3.095 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.276 1.276 18 C 0.152 3.848 19 C -0.159 4.159 20 C -0.077 4.077 21 C -0.184 4.184 22 C 0.099 3.901 23 N -0.470 5.470 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.129 0.871 29 H 0.397 0.603 30 H 0.384 0.616 31 H 0.267 0.733 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 -3.064 -13.676 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.160 3.840 3 C -0.150 4.150 4 C 0.344 3.656 5 O -0.396 6.396 6 O -0.339 6.339 7 N -0.402 5.402 8 C 0.365 3.635 9 O -0.461 6.461 10 C -0.578 4.578 11 H 0.085 0.915 12 C -0.130 4.130 13 N -0.395 5.395 14 Si 0.730 3.270 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.202 1.202 18 C 0.014 3.986 19 C -0.180 4.180 20 C -0.103 4.103 21 C -0.204 4.204 22 C -0.058 4.058 23 N -0.179 5.179 24 H 0.075 0.925 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.147 0.853 29 H 0.254 0.746 30 H 0.217 0.783 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.611 -1.607 -13.299 13.492 hybrid contribution 1.226 -1.849 0.427 2.259 sum 2.836 -3.457 -12.872 13.627 Atomic orbital electron populations 1.22235 0.93188 1.02433 1.03567 1.18486 0.93481 0.89209 0.82799 1.21693 0.87628 0.99606 1.06076 1.23134 0.91507 0.80456 0.70532 1.90593 1.70373 1.33143 1.45530 1.84549 1.25575 1.37179 1.86612 1.46220 1.57221 1.32957 1.03756 1.18141 0.80036 0.84205 0.81105 1.90511 1.41808 1.28194 1.85609 1.20906 1.33683 1.13734 0.89469 0.91528 1.25667 0.93356 0.94118 0.99904 1.70013 1.27031 1.18479 1.23957 0.86354 0.79104 0.80063 0.81479 1.18841 1.20209 1.20165 1.21246 0.91594 0.91357 0.94359 1.21932 1.01797 0.95764 0.98463 1.21512 0.95383 0.99866 0.93547 1.22024 1.01018 0.96277 1.01095 1.22619 0.96866 0.92568 0.93774 1.67395 1.08430 1.39506 1.02603 0.92502 0.88364 0.93176 0.88630 0.85282 0.74623 0.78315 0.92203 0.84596 0.85158 0.85359 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.21 37.16 0.31 -2.52 16 2 C 0.25 4.82 0.45 -132.97 -0.06 4.76 16 3 C -0.11 -2.20 4.28 -27.89 -0.12 -2.32 16 4 C 0.50 10.04 7.01 36.00 0.25 10.30 16 5 O -0.51 -11.08 14.04 -18.75 -0.26 -11.34 16 6 O -0.53 -9.03 13.42 -39.24 -0.53 -9.56 16 7 N -0.75 -16.73 3.79 -50.08 -0.19 -16.92 16 8 C 0.56 15.21 7.17 -12.99 -0.09 15.12 16 9 O -0.58 -16.98 11.22 5.21 0.06 -16.92 16 10 C -0.54 -15.14 9.54 -35.63 -0.34 -15.48 16 11 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 12 C 0.09 2.46 5.50 -17.36 -0.10 2.36 16 13 N -0.77 -22.32 11.83 55.55 0.66 -21.66 16 14 Si 0.91 20.16 29.56 -169.99 -5.02 15.14 16 15 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 C 0.15 2.62 4.64 -82.58 -0.38 2.24 16 19 C -0.16 -2.36 8.88 -39.44 -0.35 -2.71 16 20 C -0.08 -0.94 10.18 -39.28 -0.40 -1.34 16 21 C -0.18 -2.14 10.11 -39.44 -0.40 -2.54 16 22 C 0.10 1.34 11.18 -17.55 -0.20 1.15 16 23 N -0.47 -7.87 7.01 -9.47 -0.07 -7.93 16 24 H 0.06 0.96 7.37 -51.93 -0.38 0.58 16 25 H 0.10 2.11 6.16 -51.93 -0.32 1.79 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 1.65 8.05 -51.93 -0.42 1.24 16 28 H 0.13 2.93 6.16 -51.93 -0.32 2.61 16 29 H 0.40 4.99 9.10 45.56 0.41 5.41 16 30 H 0.38 8.39 8.23 -40.82 -0.34 8.05 16 31 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 32 H 0.14 1.91 7.57 -52.49 -0.40 1.51 16 33 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 300.45 15.07 4.53 4.53 Total: -1.00 -34.35 300.45 -5.70 -40.06 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -3.00 Total: 15.60 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -1.88 Total: 9.02 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.40 Total: -46.51 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.73 Total: -37.83 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.35 -5.70 -40.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592281554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.959 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds