Wall clock time and date at job start Tue Mar 31 2020 00:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47538 * 2 1 4 4 C 1.50698 * 109.47444 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00079 * 359.97438 * 4 3 2 6 6 O 1.34222 * 119.99943 * 179.97438 * 4 3 2 7 7 N 1.46502 * 109.47129 * 119.99918 * 2 1 3 8 8 C 1.34774 * 119.99907 * 299.99928 * 7 2 1 9 9 O 1.21680 * 120.00271 * 359.97438 * 8 7 2 10 10 C 1.46380 * 119.99562 * 179.97438 * 8 7 2 11 11 H 1.07997 * 120.00108 * 0.02562 * 10 8 7 12 12 C 1.40056 * 119.99693 * 179.97438 * 10 8 7 13 13 N 1.30669 * 119.99625 * 0.02562 * 12 10 8 14 14 Si 1.86790 * 119.99934 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47547 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47484 * 120.00062 * 14 12 10 17 17 H 1.48508 * 109.47223 * 240.00177 * 14 12 10 18 18 C 1.50707 * 109.47004 * 239.99428 * 2 1 3 19 19 C 1.38227 * 119.62059 * 300.02603 * 18 2 1 20 20 C 1.38627 * 119.15702 * 179.74122 * 19 18 2 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61137 * 120.00033 * 18 2 1 24 24 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46890 * 300.00063 * 1 2 3 26 26 H 1.08995 * 109.47137 * 60.00070 * 1 2 3 27 27 H 1.09003 * 109.46701 * 300.00381 * 3 2 1 28 28 H 1.08998 * 109.47087 * 59.99497 * 3 2 1 29 29 H 0.96705 * 117.00119 * 179.97438 * 6 4 3 30 30 H 0.97005 * 120.00154 * 119.99559 * 7 2 1 31 31 H 0.97004 * 119.99591 * 180.02562 * 13 12 10 32 32 H 1.07998 * 120.41916 * 359.95342 * 19 18 2 33 33 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 34 34 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 35 35 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1512 0.3960 -0.0006 6 8 4.2182 2.6048 -0.0013 7 7 2.0183 -0.6906 1.1962 8 6 1.6928 -0.2301 2.4203 9 8 0.9936 0.7595 2.5319 10 6 2.1803 -0.9205 3.6154 11 1 2.8012 -1.7986 3.5163 12 6 1.8424 -0.4417 4.8875 13 7 1.0916 0.6210 5.0073 14 14 2.4650 -1.3222 6.4126 15 1 3.2890 -2.4897 6.0085 16 1 3.2906 -0.3891 7.2207 17 1 1.3100 -1.7884 7.2213 18 6 2.0323 -0.7106 -1.2305 19 6 1.6931 -2.0338 -1.4415 20 6 2.1560 -2.6765 -2.5793 21 6 2.9546 -1.9640 -3.4611 22 6 3.2517 -0.6433 -3.1838 23 7 2.7899 -0.0625 -2.0934 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 5.1839 2.5542 -0.0013 30 1 2.5760 -1.4793 1.1072 31 1 0.8579 0.9529 5.8883 32 1 1.0726 -2.5593 -0.7308 33 1 1.9040 -3.7089 -2.7722 34 1 3.3357 -2.4340 -4.3557 35 1 3.8695 -0.0803 -3.8675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592281554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:39 Heat of formation + Delta-G solvation = -110.279773 kcal Electronic energy + Delta-G solvation = -22367.832974 eV Core-core repulsion = 18944.173537 eV Total energy + Delta-G solvation = -3423.659437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.92223 -40.55942 -39.47777 -37.05784 -36.28220 -34.51155 -33.41460 -32.40470 -31.27705 -29.33192 -28.13330 -25.16834 -24.30756 -23.01777 -22.31170 -20.33247 -19.43575 -18.87357 -18.00994 -17.51508 -17.21723 -16.93655 -16.63737 -16.41917 -15.73934 -15.52554 -14.96880 -14.68583 -14.47203 -14.31779 -13.97269 -13.65134 -13.36293 -13.22048 -12.96270 -12.94084 -12.64532 -12.59545 -12.47424 -12.24852 -12.18734 -11.97572 -11.33681 -10.91082 -10.70599 -10.31511 -9.95035 -9.60853 -9.39842 -8.24836 -6.80476 0.21449 0.45259 1.38438 1.39548 1.54406 1.55706 2.24165 2.32726 2.50736 2.80069 3.17744 3.31791 3.57324 3.80503 3.95496 4.12163 4.25300 4.34212 4.36248 4.54057 4.65104 4.68584 4.77481 4.86586 4.91636 5.02711 5.29790 5.32662 5.34438 5.42881 5.76615 5.85321 5.91881 6.21439 6.33210 6.91293 7.12467 7.21407 7.57070 8.53462 8.71417 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021562 B = 0.005976 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.286670 B = 4684.301177 C = 5096.919423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.245 3.755 3 C -0.110 4.110 4 C 0.501 3.499 5 O -0.529 6.529 6 O -0.524 6.524 7 N -0.735 5.735 8 C 0.551 3.449 9 O -0.608 6.608 10 C -0.575 4.575 11 H 0.073 0.927 12 C 0.036 3.964 13 N -0.814 5.814 14 Si 0.988 3.012 15 H -0.255 1.255 16 H -0.270 1.270 17 H -0.265 1.265 18 C 0.128 3.872 19 C -0.170 4.170 20 C -0.073 4.073 21 C -0.168 4.168 22 C 0.084 3.916 23 N -0.496 5.496 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.417 0.583 30 H 0.386 0.614 31 H 0.274 0.726 32 H 0.135 0.865 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.431 -4.870 -15.250 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 C -0.148 4.148 4 C 0.344 3.656 5 O -0.417 6.417 6 O -0.337 6.337 7 N -0.389 5.389 8 C 0.355 3.645 9 O -0.494 6.494 10 C -0.612 4.612 11 H 0.092 0.908 12 C -0.179 4.179 13 N -0.444 5.444 14 Si 0.808 3.192 15 H -0.178 1.178 16 H -0.195 1.195 17 H -0.190 1.190 18 C -0.009 4.009 19 C -0.190 4.190 20 C -0.099 4.099 21 C -0.187 4.187 22 C -0.073 4.073 23 N -0.206 5.206 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.135 0.865 28 H 0.112 0.888 29 H 0.277 0.723 30 H 0.219 0.781 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.183 0.817 34 H 0.187 0.813 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.772 -3.413 -14.912 15.546 hybrid contribution 0.929 -1.262 0.735 1.730 sum 3.701 -4.675 -14.177 15.380 Atomic orbital electron populations 1.22099 0.92808 1.02779 1.02803 1.18586 0.93855 0.88929 0.82899 1.21611 0.87980 0.99997 1.05246 1.23124 0.91640 0.80714 0.70114 1.90572 1.70757 1.33868 1.46542 1.84495 1.27403 1.35784 1.86014 1.45920 1.56430 1.32694 1.03832 1.18295 0.79773 0.83892 0.82562 1.90491 1.43007 1.29372 1.86573 1.21389 1.34532 1.14468 0.90783 0.90837 1.26756 0.93030 0.94680 1.03444 1.70147 1.28534 1.20371 1.25300 0.85110 0.78758 0.78800 0.76494 1.17829 1.19520 1.18997 1.20811 0.93762 0.92294 0.94064 1.22020 1.02235 0.95004 0.99765 1.21931 0.94376 1.01355 0.92193 1.22470 0.99171 0.95309 1.01773 1.23173 0.96923 0.93970 0.93226 1.67273 1.08981 1.40627 1.03719 0.91573 0.92215 0.90609 0.86525 0.88776 0.72255 0.78093 0.91635 0.84693 0.81688 0.81348 0.80924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 8.21 71.98 0.59 -4.89 16 2 C 0.25 9.69 0.45 2.86 0.00 9.69 16 3 C -0.11 -4.46 4.28 29.85 0.13 -4.33 16 4 C 0.50 20.26 7.01 71.24 0.50 20.76 16 5 O -0.53 -23.05 14.04 21.96 0.31 -22.74 16 6 O -0.52 -17.77 13.42 -51.34 -0.69 -18.46 16 7 N -0.74 -34.00 3.79 -430.57 -1.63 -35.63 16 8 C 0.55 31.15 7.17 86.36 0.62 31.77 16 9 O -0.61 -37.72 11.22 -4.28 -0.05 -37.77 16 10 C -0.57 -33.01 9.54 24.83 0.24 -32.77 16 11 H 0.07 3.96 7.85 -2.91 -0.02 3.94 16 12 C 0.04 2.04 5.50 85.31 0.47 2.51 16 13 N -0.81 -48.93 11.83 21.84 0.26 -48.67 16 14 Si 0.99 41.70 29.56 68.60 2.03 43.73 16 15 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 17 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 18 C 0.13 4.31 4.64 42.55 0.20 4.50 16 19 C -0.17 -4.77 8.88 22.36 0.20 -4.57 16 20 C -0.07 -1.51 10.18 22.47 0.23 -1.28 16 21 C -0.17 -3.19 10.11 22.36 0.23 -2.96 16 22 C 0.08 2.04 11.18 84.67 0.95 2.99 16 23 N -0.50 -15.92 7.01 -183.88 -1.29 -17.21 16 24 H 0.07 2.28 7.37 -2.39 -0.02 2.26 16 25 H 0.06 2.71 6.16 -2.39 -0.01 2.69 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.12 4.11 8.05 -2.39 -0.02 4.09 16 28 H 0.09 4.53 6.16 -2.39 -0.01 4.52 16 29 H 0.42 10.11 9.10 -74.05 -0.67 9.44 16 30 H 0.39 17.27 8.23 -92.70 -0.76 16.50 16 31 H 0.27 14.92 8.29 -92.71 -0.77 14.15 16 32 H 0.14 3.68 7.57 -2.91 -0.02 3.66 16 33 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -77.35 300.45 2.99 -74.36 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -0.29 Total: 40.96 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 4.34 Total: 21.42 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -2.66 Total: -101.50 kcal Atomic # 8 Polarization: -78.54 SS G_CDS: -0.43 Total: -78.97 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -77.35 2.99 -74.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592281554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.921 kcal (2) G-P(sol) polarization free energy of solvation -77.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds