Wall clock time and date at job start Tue Mar 31 2020 00:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21514 * 120.00297 * 359.97438 * 14 13 3 16 16 C 1.48145 * 119.99535 * 180.02562 * 14 13 3 17 17 C 1.39804 * 120.89347 * 359.97438 * 16 14 13 18 18 C 1.38521 * 119.19754 * 180.02562 * 17 16 14 19 19 N 1.31438 * 121.03947 * 0.02562 * 18 17 16 20 20 C 1.32697 * 121.96365 * 359.97438 * 19 18 17 21 21 C 1.48076 * 119.66427 * 180.02562 * 20 19 18 22 22 O 1.21425 * 120.00384 * 180.02562 * 21 20 19 23 23 O 1.34679 * 119.99708 * 359.97438 * 21 20 19 24 24 C 1.39286 * 120.67935 * 359.72383 * 20 19 18 25 25 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 26 26 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 28 28 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 29 29 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 30 30 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 32 32 H 1.08006 * 120.39600 * 0.02562 * 17 16 14 33 33 H 1.07998 * 119.47939 * 179.97438 * 18 17 16 34 34 H 0.96692 * 116.99826 * 180.02562 * 23 21 20 35 35 H 1.08001 * 120.55204 * 180.31398 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3408 2.6325 0.4325 16 6 0.0435 3.3270 2.6329 17 6 0.9216 3.3748 3.7196 18 6 0.5189 4.0031 4.8866 19 7 -0.6716 4.5513 4.9851 20 6 -1.5394 4.5314 3.9814 21 6 -2.8671 5.1655 4.1478 22 8 -3.6660 5.1505 3.2335 23 8 -3.1889 5.7581 5.3136 24 6 -1.2118 3.9256 2.7707 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8770 0.4827 -2.1133 31 1 2.2720 2.1230 1.9979 32 1 1.9022 2.9273 3.6501 33 1 1.1935 4.0424 5.7291 34 1 -4.0671 6.1581 5.3750 35 1 -1.9178 3.9150 1.9534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595029469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:08 Heat of formation + Delta-G solvation = -84.001177 kcal Electronic energy + Delta-G solvation = -21083.343667 eV Core-core repulsion = 17660.823756 eV Total energy + Delta-G solvation = -3422.519911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09555 -39.94100 -38.88095 -36.37983 -35.54822 -33.35927 -32.37331 -31.85675 -31.30293 -27.71901 -25.79540 -24.62819 -22.73864 -22.41963 -21.00660 -19.86711 -18.73716 -18.19735 -17.08220 -16.56769 -16.28495 -16.04681 -15.74986 -15.27582 -15.09755 -14.70669 -14.24744 -13.89364 -13.73241 -13.47965 -13.07719 -12.51126 -12.21555 -12.02831 -11.89780 -11.81689 -11.20056 -11.14933 -11.02489 -10.72641 -10.20288 -10.12301 -10.00307 -9.69156 -9.60304 -9.40120 -9.34185 -8.85693 -8.27806 -6.29795 -4.33653 0.14199 0.63590 2.06382 2.53564 3.09551 3.17606 3.30380 3.34093 3.51084 3.72476 3.99823 4.23806 4.49128 4.58546 4.66305 4.86767 5.03667 5.12026 5.41737 5.53832 5.78421 5.86544 5.93345 6.07454 6.11943 6.16216 6.54439 6.60275 6.71012 6.84024 7.06827 7.15835 7.29577 7.36800 7.67288 7.95914 8.33444 8.57582 8.70479 9.29819 10.81951 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.004103 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.548466 B = 6823.134374 C = 7334.116946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.242 3.758 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.081 0.919 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.260 1.260 12 H -0.293 1.293 13 N -0.687 5.687 14 C 0.543 3.457 15 O -0.531 6.531 16 C -0.084 4.084 17 C -0.107 4.107 18 C 0.095 3.905 19 N -0.426 5.426 20 C 0.078 3.922 21 C 0.545 3.455 22 O -0.502 6.502 23 O -0.493 6.493 24 C -0.052 4.052 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.269 0.731 31 H 0.395 0.605 32 H 0.153 0.847 33 H 0.174 0.826 34 H 0.413 0.587 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 5.235 12.985 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.184 1.184 12 H -0.220 1.220 13 N -0.335 5.335 14 C 0.327 3.673 15 O -0.409 6.409 16 C -0.095 4.095 17 C -0.127 4.127 18 C -0.066 4.066 19 N -0.138 5.138 20 C -0.058 4.058 21 C 0.387 3.613 22 O -0.389 6.389 23 O -0.303 6.303 24 C -0.073 4.073 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.230 0.770 32 H 0.171 0.829 33 H 0.191 0.809 34 H 0.271 0.729 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.365 5.378 12.639 17.827 hybrid contribution -0.295 -0.656 -1.062 1.282 sum -11.659 4.721 11.577 17.096 Atomic orbital electron populations 1.21893 0.96886 0.99310 1.02226 1.22302 0.94384 0.99708 1.01395 1.19261 0.95939 0.88627 0.82262 0.92928 1.20994 0.88320 1.40306 1.08104 0.90085 1.24819 0.94885 0.95020 0.97633 1.69858 1.08692 1.44157 1.29835 0.86915 0.80970 0.79999 0.80956 1.20132 1.18410 1.22033 1.46134 1.14100 1.54904 1.18349 1.17956 0.83272 0.79696 0.86351 1.90785 1.51391 1.59441 1.39309 1.20703 0.94378 0.98671 0.95725 1.22849 1.00574 0.96318 0.93000 1.22864 0.92374 0.93902 0.97429 1.67500 1.02691 1.13841 1.29741 1.19826 0.92844 1.01604 0.91516 1.20382 0.86049 0.75054 0.79796 1.90942 1.50045 1.56291 1.41598 1.84669 1.40946 1.67719 1.36971 1.22213 0.96247 0.91525 0.97268 0.92715 0.94720 0.93111 0.92497 0.92119 0.92145 0.77001 0.82932 0.80922 0.72886 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.51 37.16 0.32 -2.49 16 2 C -0.14 -2.93 5.11 -26.73 -0.14 -3.07 16 3 C 0.24 5.40 1.83 -69.08 -0.13 5.27 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 5 C -0.54 -13.80 9.31 -34.44 -0.32 -14.12 16 6 H 0.08 2.16 7.98 -52.49 -0.42 1.74 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.44 13.96 55.43 0.77 -24.66 16 9 Si 0.88 20.97 24.41 -169.99 -4.15 16.82 16 10 H -0.27 -6.32 6.83 56.52 0.39 -5.94 16 11 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 N -0.69 -12.42 4.98 -55.78 -0.28 -12.70 16 14 C 0.54 9.54 6.36 -12.19 -0.08 9.46 16 15 O -0.53 -11.02 13.58 5.35 0.07 -10.95 16 16 C -0.08 -1.16 5.91 -104.68 -0.62 -1.78 16 17 C -0.11 -1.12 9.62 -38.89 -0.37 -1.50 16 18 C 0.09 0.91 11.17 -17.62 -0.20 0.71 16 19 N -0.43 -5.10 10.09 -9.86 -0.10 -5.20 16 20 C 0.08 1.00 6.75 -83.07 -0.56 0.44 16 21 C 0.55 6.64 8.32 34.77 0.29 6.93 16 22 O -0.50 -7.20 17.11 -19.21 -0.33 -7.53 16 23 O -0.49 -4.52 13.24 -40.44 -0.54 -5.05 16 24 C -0.05 -0.71 9.20 -38.62 -0.36 -1.07 16 25 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.95 5.64 -51.93 -0.29 0.66 16 28 H 0.06 1.27 3.22 -51.93 -0.17 1.10 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.40 6.03 6.67 -40.82 -0.27 5.76 16 32 H 0.15 1.25 6.53 -52.48 -0.34 0.91 16 33 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.41 1.62 9.11 45.56 0.42 2.04 16 35 H 0.16 2.38 7.33 -52.49 -0.38 2.00 16 LS Contribution 298.98 15.07 4.51 4.51 Total: -1.00 -32.86 298.98 -4.96 -37.82 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -2.67 Total: 6.07 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.26 Total: 0.88 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.40 Total: -42.56 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.79 Total: -23.53 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.15 Total: 16.82 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.86 -4.96 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595029469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.180 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds