Wall clock time and date at job start Tue Mar 31 2020 00:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21513 * 120.00315 * 359.72062 * 14 13 3 16 16 C 1.48147 * 119.99719 * 179.72356 * 14 13 3 17 17 C 1.39802 * 120.88836 * 359.97438 * 16 14 13 18 18 C 1.38520 * 119.19675 * 179.97438 * 17 16 14 19 19 N 1.31448 * 121.03969 * 0.02562 * 18 17 16 20 20 C 1.32700 * 121.96013 * 359.97438 * 19 18 17 21 21 C 1.48072 * 119.66115 * 180.02562 * 20 19 18 22 22 O 1.21431 * 120.00125 * 179.97438 * 21 20 19 23 23 O 1.34681 * 119.99824 * 359.97438 * 21 20 19 24 24 C 1.39290 * 120.67820 * 359.71641 * 20 19 18 25 25 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 26 26 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 28 28 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 29 29 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 30 30 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 32 32 H 1.08002 * 120.40668 * 359.97438 * 17 16 14 33 33 H 1.08004 * 119.48388 * 179.97438 * 18 17 16 34 34 H 0.96699 * 116.99469 * 179.97438 * 23 21 20 35 35 H 1.07996 * 120.55090 * 180.31289 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3389 2.6371 -0.4304 16 6 0.0475 3.3370 -2.6287 17 6 0.9259 3.3854 -3.7152 18 6 0.5252 4.0184 -4.8804 19 7 -0.6634 4.5715 -4.9769 20 6 -1.5312 4.5513 -3.9732 21 6 -2.8569 5.1900 -4.1378 22 8 -3.6559 5.1747 -3.2235 23 8 -3.1765 5.7879 -5.3015 24 6 -1.2103 3.9298 -2.7687 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8293 -0.0619 2.9495 31 1 2.2719 2.1232 -1.9977 32 1 1.9050 2.9348 -3.6471 33 1 1.2002 4.0589 -5.7225 34 1 -4.0535 6.1907 -5.3617 35 1 -1.9200 3.9102 -1.9549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595029499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:10 Heat of formation + Delta-G solvation = -92.414581 kcal Electronic energy + Delta-G solvation = -20998.203505 eV Core-core repulsion = 17575.318761 eV Total energy + Delta-G solvation = -3422.884744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02581 -39.84565 -38.70521 -36.33596 -35.26457 -33.25915 -32.31490 -31.74357 -30.81552 -27.21791 -25.72883 -24.52914 -22.97013 -22.33601 -20.64663 -19.57458 -18.63089 -18.12695 -16.96496 -16.42812 -16.15668 -15.99758 -15.37988 -15.15349 -14.83894 -14.72339 -14.18943 -13.81970 -13.65972 -13.27728 -12.77248 -12.24369 -12.10205 -11.77802 -11.62631 -11.33437 -11.11488 -11.07839 -10.90443 -10.43974 -10.30007 -10.09886 -10.02268 -9.71556 -9.54763 -9.32616 -9.16834 -8.59701 -8.02822 -6.20782 -4.31428 0.20149 0.71301 2.11718 2.58562 3.19897 3.21108 3.26314 3.26640 3.66484 3.83862 4.05401 4.27681 4.57344 4.64237 4.73234 4.98308 5.10837 5.18371 5.47472 5.63153 5.87173 6.16108 6.22235 6.31030 6.36483 6.56118 6.93805 7.08777 7.19549 7.27937 7.34418 7.49963 7.59878 7.71824 7.77854 8.06907 8.43254 8.62772 8.87432 9.35808 10.84465 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030776 B = 0.003916 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.589390 B = 7147.742843 C = 7697.012192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.694 5.694 14 C 0.540 3.460 15 O -0.530 6.530 16 C -0.082 4.082 17 C -0.109 4.109 18 C 0.093 3.907 19 N -0.427 5.427 20 C 0.077 3.923 21 C 0.545 3.455 22 O -0.501 6.501 23 O -0.493 6.493 24 C -0.052 4.052 25 H 0.036 0.964 26 H 0.025 0.975 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.102 0.898 30 H 0.266 0.734 31 H 0.389 0.611 32 H 0.151 0.849 33 H 0.172 0.828 34 H 0.412 0.588 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 6.208 -14.138 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.342 5.342 14 C 0.324 3.676 15 O -0.408 6.408 16 C -0.093 4.093 17 C -0.130 4.130 18 C -0.067 4.067 19 N -0.139 5.139 20 C -0.058 4.058 21 C 0.387 3.613 22 O -0.388 6.388 23 O -0.304 6.304 24 C -0.073 4.073 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.222 0.778 32 H 0.169 0.831 33 H 0.189 0.811 34 H 0.271 0.729 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.301 6.291 -13.701 16.340 hybrid contribution 1.034 -0.194 0.419 1.133 sum -5.267 6.097 -13.281 15.534 Atomic orbital electron populations 1.21856 0.98297 0.98315 1.01190 1.21949 0.92634 0.99544 1.02543 1.18906 0.94491 0.89311 0.80435 0.92922 1.21150 0.90416 1.39617 1.06557 0.92033 1.24878 0.98735 0.94638 0.95287 1.69875 1.35359 1.37171 1.09321 0.86490 0.84612 0.78366 0.77547 1.20134 1.21076 1.20106 1.46485 1.14002 1.54745 1.18924 1.17938 0.83553 0.79951 0.86203 1.90788 1.51216 1.59567 1.39206 1.20825 0.94192 0.98333 0.95935 1.22823 1.00611 0.96467 0.93052 1.22842 0.92423 0.94018 0.97420 1.67496 1.02683 1.14204 1.29565 1.19825 0.92857 1.01510 0.91635 1.20394 0.86031 0.75108 0.79766 1.90945 1.49956 1.56432 1.41506 1.84672 1.41043 1.67463 1.37173 1.22227 0.96352 0.91523 0.97218 0.94481 0.95600 0.92990 0.94863 0.88027 0.92355 0.77777 0.83091 0.81054 0.72933 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.68 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.41 2.24 -69.08 -0.15 6.25 16 4 H 0.05 1.46 7.57 -51.93 -0.39 1.07 16 5 C -0.54 -13.47 8.73 -34.44 -0.30 -13.77 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.78 11.29 55.43 0.63 -23.16 16 9 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 N -0.69 -13.23 4.98 -55.78 -0.28 -13.51 16 14 C 0.54 10.12 6.37 -12.19 -0.08 10.04 16 15 O -0.53 -11.81 13.59 5.35 0.07 -11.74 16 16 C -0.08 -1.20 5.91 -104.68 -0.62 -1.82 16 17 C -0.11 -1.20 9.62 -38.89 -0.37 -1.58 16 18 C 0.09 0.94 11.17 -17.61 -0.20 0.74 16 19 N -0.43 -5.32 10.09 -9.86 -0.10 -5.42 16 20 C 0.08 1.04 6.75 -83.07 -0.56 0.48 16 21 C 0.55 6.92 8.32 34.77 0.29 7.21 16 22 O -0.50 -7.47 17.11 -19.21 -0.33 -7.80 16 23 O -0.49 -4.72 13.24 -40.44 -0.54 -5.26 16 24 C -0.05 -0.76 9.20 -38.63 -0.36 -1.12 16 25 H 0.04 0.77 5.66 -51.93 -0.29 0.48 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.39 6.16 6.67 -40.82 -0.27 5.89 16 32 H 0.15 1.30 6.53 -52.49 -0.34 0.96 16 33 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.41 1.78 9.11 45.56 0.42 2.19 16 35 H 0.16 2.53 7.33 -52.49 -0.38 2.15 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -31.74 305.78 -6.02 -37.76 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -2.80 Total: 7.42 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.27 Total: 2.32 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.25 Total: -42.09 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.79 Total: -24.80 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.74 -6.02 -37.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595029499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.650 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds