Wall clock time and date at job start Tue Mar 31 2020 00:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21513 * 120.00315 * 359.72062 * 14 13 3 16 16 C 1.48147 * 119.99719 * 179.72356 * 14 13 3 17 17 C 1.39802 * 120.88836 * 359.97438 * 16 14 13 18 18 C 1.38520 * 119.19675 * 179.97438 * 17 16 14 19 19 N 1.31448 * 121.03969 * 0.02562 * 18 17 16 20 20 C 1.32700 * 121.96013 * 359.97438 * 19 18 17 21 21 C 1.48072 * 119.66115 * 180.02562 * 20 19 18 22 22 O 1.21431 * 120.00125 * 179.97438 * 21 20 19 23 23 O 1.34681 * 119.99824 * 359.97438 * 21 20 19 24 24 C 1.39290 * 120.67820 * 359.71641 * 20 19 18 25 25 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 26 26 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 28 28 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 29 29 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 30 30 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 32 32 H 1.08002 * 120.40668 * 359.97438 * 17 16 14 33 33 H 1.08004 * 119.48388 * 179.97438 * 18 17 16 34 34 H 0.96699 * 116.99469 * 179.97438 * 23 21 20 35 35 H 1.07996 * 120.55090 * 180.31289 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3389 2.6371 -0.4304 16 6 0.0475 3.3370 -2.6287 17 6 0.9259 3.3854 -3.7152 18 6 0.5252 4.0184 -4.8804 19 7 -0.6634 4.5715 -4.9769 20 6 -1.5312 4.5513 -3.9732 21 6 -2.8569 5.1900 -4.1378 22 8 -3.6559 5.1747 -3.2235 23 8 -3.1765 5.7879 -5.3015 24 6 -1.2103 3.9298 -2.7687 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8293 -0.0619 2.9495 31 1 2.2719 2.1232 -1.9977 32 1 1.9050 2.9348 -3.6471 33 1 1.2002 4.0589 -5.7225 34 1 -4.0535 6.1907 -5.3617 35 1 -1.9200 3.9102 -1.9549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595029499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:10 Heat of formation + Delta-G solvation = -116.018168 kcal Electronic energy + Delta-G solvation = -20999.227033 eV Core-core repulsion = 17575.318761 eV Total energy + Delta-G solvation = -3423.908272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.06584 -41.01140 -40.01647 -37.24382 -37.03035 -34.67750 -33.90799 -32.82318 -32.42733 -29.05730 -26.73825 -25.88916 -24.65576 -23.36421 -22.11089 -21.26337 -19.90638 -19.15271 -18.24517 -17.87648 -17.37897 -16.97899 -16.85792 -16.48715 -16.32991 -16.17266 -15.43515 -14.98418 -14.81832 -14.58237 -14.48985 -13.90258 -13.53027 -13.17048 -13.10360 -12.91712 -12.68214 -12.64129 -12.20764 -12.11806 -12.07793 -11.61773 -11.28855 -11.13982 -11.06980 -10.71602 -10.52388 -10.49106 -9.74706 -8.15253 -6.33038 -0.79355 -0.35310 1.15680 1.48201 1.49461 1.57063 1.69122 1.93826 2.24480 2.48581 2.70157 3.14875 3.18104 3.52676 3.67178 3.71575 3.85688 4.28657 4.48082 4.55056 4.56562 4.57812 4.74179 4.86306 5.04896 5.24555 5.30343 5.38579 5.40774 5.48759 5.59076 5.77113 5.88198 6.15071 6.46524 6.72991 6.82682 6.89720 7.28894 7.44381 8.89944 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030776 B = 0.003916 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.589390 B = 7147.742843 C = 7697.012192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.001 0.999 5 C -0.549 4.549 6 H 0.078 0.922 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.262 1.262 13 N -0.687 5.687 14 C 0.540 3.460 15 O -0.575 6.575 16 C -0.099 4.099 17 C -0.087 4.087 18 C 0.109 3.891 19 N -0.431 5.431 20 C 0.070 3.930 21 C 0.551 3.449 22 O -0.533 6.533 23 O -0.484 6.484 24 C -0.064 4.064 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.025 0.975 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.265 0.735 31 H 0.407 0.593 32 H 0.182 0.818 33 H 0.222 0.778 34 H 0.435 0.565 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 6.637 -17.376 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.019 0.981 5 C -0.587 4.587 6 H 0.096 0.904 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.186 1.186 13 N -0.337 5.337 14 C 0.326 3.674 15 O -0.455 6.455 16 C -0.110 4.110 17 C -0.108 4.108 18 C -0.051 4.051 19 N -0.143 5.143 20 C -0.065 4.065 21 C 0.394 3.606 22 O -0.423 6.423 23 O -0.297 6.297 24 C -0.086 4.086 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.244 0.756 32 H 0.199 0.801 33 H 0.238 0.762 34 H 0.297 0.703 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.564 6.750 -17.008 18.859 hybrid contribution 0.462 -0.270 1.334 1.437 sum -4.102 6.480 -15.674 17.449 Atomic orbital electron populations 1.21706 0.97265 0.99269 1.00140 1.21801 0.93458 0.99047 1.01721 1.18473 0.93994 0.89231 0.80877 0.98097 1.21539 0.91059 1.39164 1.06937 0.90386 1.25759 1.03249 0.94344 0.95023 1.70041 1.37200 1.38193 1.09886 0.85426 0.79120 0.78438 0.77528 1.19658 1.21636 1.18648 1.46139 1.14748 1.54697 1.18077 1.18473 0.82657 0.79103 0.87165 1.90767 1.52403 1.61047 1.41323 1.20403 0.95343 0.99979 0.95233 1.23164 1.00806 0.95050 0.91767 1.23649 0.91866 0.91563 0.98062 1.67604 1.03414 1.14390 1.28867 1.19821 0.93618 1.01705 0.91353 1.20309 0.85571 0.74760 0.79990 1.90936 1.50844 1.57788 1.42720 1.84614 1.42907 1.66834 1.35317 1.22058 0.96274 0.92741 0.97506 0.94004 0.93484 0.95562 0.93503 0.90800 0.92612 0.75575 0.80076 0.76178 0.70254 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 8.52 71.98 0.61 -4.95 16 2 C -0.12 -5.71 5.45 30.59 0.17 -5.55 16 3 C 0.28 13.44 2.24 44.25 0.10 13.54 16 4 H 0.00 0.07 7.57 -2.39 -0.02 0.05 16 5 C -0.55 -27.23 8.73 25.60 0.22 -27.01 16 6 H 0.08 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.86 5.29 84.65 0.45 1.30 16 8 N -0.92 -50.73 11.29 21.45 0.24 -50.49 16 9 Si 0.97 40.11 29.54 68.60 2.03 42.13 16 10 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 13 N -0.69 -25.89 4.98 -448.69 -2.23 -28.13 16 14 C 0.54 20.48 6.37 86.88 0.55 21.03 16 15 O -0.57 -26.97 13.59 -3.76 -0.05 -27.02 16 16 C -0.10 -2.81 5.91 -19.90 -0.12 -2.93 16 17 C -0.09 -1.62 9.62 22.72 0.22 -1.40 16 18 C 0.11 1.69 11.17 84.82 0.95 2.63 16 19 N -0.43 -9.35 10.09 -185.10 -1.87 -11.22 16 20 C 0.07 1.80 6.75 41.88 0.28 2.08 16 21 C 0.55 13.60 8.32 70.43 0.59 14.19 16 22 O -0.53 -16.16 17.11 20.06 0.34 -15.81 16 23 O -0.48 -8.31 13.24 -55.90 -0.74 -9.05 16 24 C -0.06 -1.90 9.20 22.89 0.21 -1.69 16 25 H 0.04 1.77 5.66 -2.39 -0.01 1.76 16 26 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.03 1.25 7.85 -2.39 -0.02 1.23 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 29 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 30 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.41 11.97 6.67 -92.71 -0.62 11.35 16 32 H 0.18 2.22 6.53 -2.91 -0.02 2.20 16 33 H 0.22 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.44 2.86 9.11 -74.06 -0.67 2.18 16 35 H 0.14 4.70 7.33 -2.91 -0.02 4.68 16 Total: -1.00 -72.15 305.78 1.82 -70.33 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.13 Total: 18.00 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 4.23 Total: 11.26 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -3.86 Total: -89.84 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -0.45 Total: -51.88 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.13 kcal Total: -72.15 1.82 -70.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595029499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.689 kcal (2) G-P(sol) polarization free energy of solvation -72.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds