Wall clock time and date at job start Tue Mar 31 2020 00:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47304 * 2 1 4 4 H 1.08993 * 109.46934 * 304.99990 * 3 2 1 5 5 C 1.50705 * 109.46960 * 184.99941 * 3 2 1 6 6 H 1.07999 * 119.99828 * 240.00305 * 5 3 2 7 7 C 1.37875 * 119.99914 * 60.00211 * 5 3 2 8 8 N 1.31517 * 120.00056 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99889 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47221 * 90.00080 * 9 7 5 11 11 H 1.48503 * 109.46797 * 209.99802 * 9 7 5 12 12 H 1.48493 * 109.46906 * 329.99717 * 9 7 5 13 13 N 1.46495 * 109.46756 * 65.00217 * 3 2 1 14 14 C 1.34781 * 120.00113 * 274.99196 * 13 3 2 15 15 O 1.21491 * 119.99486 * 0.02562 * 14 13 3 16 16 C 1.48337 * 120.00321 * 180.02562 * 14 13 3 17 17 C 1.39305 * 119.56917 * 180.02562 * 16 14 13 18 18 C 1.38444 * 119.19844 * 179.97438 * 17 16 14 19 19 C 1.39912 * 118.35214 * 0.25238 * 18 17 16 20 20 C 1.47893 * 120.47080 * 179.72763 * 19 18 17 21 21 O 1.21447 * 119.99720 * 359.97438 * 20 19 18 22 22 O 1.34692 * 120.00592 * 179.97438 * 20 19 18 23 23 C 1.39776 * 119.06306 * 359.52496 * 19 18 17 24 24 N 1.31411 * 120.71042 * 0.48126 * 23 19 18 25 25 H 1.08995 * 109.47191 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47103 * 300.00009 * 1 2 3 27 27 H 1.08998 * 109.46953 * 59.99807 * 1 2 3 28 28 H 1.09001 * 109.47103 * 239.99991 * 2 1 3 29 29 H 1.08998 * 109.46953 * 120.00193 * 2 1 3 30 30 H 0.97002 * 119.99738 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00528 * 95.00685 * 13 3 2 32 32 H 1.08001 * 120.39767 * 0.02562 * 17 16 14 33 33 H 1.08002 * 120.82110 * 179.97438 * 18 17 16 34 34 H 0.96694 * 116.99951 * 179.97438 * 22 20 19 35 35 H 1.07997 * 119.64238 * 180.23080 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3365 -2.1729 9 14 6.0051 0.8798 -1.3811 10 1 6.5538 -0.3523 -0.7598 11 1 6.3836 0.9212 -2.8165 12 1 6.5576 2.0716 -0.6889 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3407 2.6320 0.4327 16 6 0.0430 3.3281 2.6343 17 6 -1.2176 3.9108 2.7437 18 6 -1.5759 4.5276 3.9302 19 6 -0.6475 4.5449 4.9768 20 6 -0.9789 5.1963 6.2625 21 8 -2.0632 5.7216 6.4154 22 8 -0.0783 5.2070 7.2640 23 6 0.5960 3.9341 4.7916 24 7 0.8976 3.3587 3.6493 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0619 -2.9495 31 1 2.2720 2.1231 1.9978 32 1 -1.9073 3.8810 1.9131 33 1 -2.5462 4.9881 4.0434 34 1 -0.3403 5.6450 8.0853 35 1 1.3182 3.9387 5.5945 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:55 Heat of formation + Delta-G solvation = -95.724521 kcal Electronic energy + Delta-G solvation = -20886.297653 eV Core-core repulsion = 17463.269379 eV Total energy + Delta-G solvation = -3423.028274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04077 -39.95601 -38.52540 -36.48593 -35.17774 -33.15809 -32.24347 -31.86413 -30.77705 -27.27629 -25.81395 -23.81350 -23.16647 -22.23597 -20.69048 -19.43175 -18.68794 -18.14774 -17.53456 -16.57104 -16.06114 -16.03271 -15.26335 -14.93055 -14.88902 -14.39190 -14.05839 -13.70224 -13.49231 -13.27314 -12.74645 -12.65350 -12.08018 -11.94599 -11.54795 -11.27092 -11.16969 -11.01233 -10.84156 -10.36477 -10.27164 -10.21500 -10.00299 -9.67497 -9.43434 -9.25011 -9.07471 -8.52585 -7.90016 -6.13936 -4.23212 0.01336 0.97822 2.06102 2.56767 3.09593 3.24817 3.31700 3.34108 3.66490 3.94774 4.16017 4.35266 4.46916 4.52447 4.85214 4.91500 5.17512 5.24114 5.51866 5.70206 5.82579 6.05553 6.25022 6.36038 6.42010 6.61431 7.00788 7.13565 7.28495 7.35401 7.43179 7.51719 7.61557 7.72125 7.86484 8.13983 8.57947 8.71984 8.99781 9.43682 10.91492 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.003859 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.977081 B = 7253.488909 C = 7972.756290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.267 3.733 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.677 5.677 14 C 0.546 3.454 15 O -0.535 6.535 16 C 0.132 3.868 17 C -0.131 4.131 18 C -0.015 4.015 19 C -0.179 4.179 20 C 0.536 3.464 21 O -0.512 6.512 22 O -0.509 6.509 23 C 0.160 3.840 24 N -0.465 5.465 25 H 0.024 0.976 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.102 0.898 29 H 0.033 0.967 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.417 0.583 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 7.004 15.341 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.166 3.834 4 H 0.070 0.930 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.324 5.324 14 C 0.328 3.672 15 O -0.414 6.414 16 C -0.006 4.006 17 C -0.152 4.152 18 C -0.041 4.041 19 C -0.183 4.183 20 C 0.380 3.620 21 O -0.401 6.401 22 O -0.321 6.321 23 C -0.001 4.001 24 N -0.176 5.176 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.120 0.880 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.235 0.765 32 H 0.178 0.822 33 H 0.171 0.829 34 H 0.276 0.724 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.337 6.394 13.971 16.620 hybrid contribution 0.268 0.684 1.022 1.258 sum -6.069 7.079 14.992 17.655 Atomic orbital electron populations 1.21851 0.98359 0.98239 1.01124 1.21950 0.92603 0.99574 1.02564 1.18932 0.94571 0.89335 0.80602 0.92980 1.21225 0.90505 1.39157 1.06404 0.91868 1.24876 0.98697 0.94729 0.95300 1.69891 1.35175 1.37543 1.09383 0.86433 0.84748 0.78512 0.77346 1.20508 1.21090 1.19804 1.46472 1.13891 1.53114 1.18910 1.17820 0.83823 0.80179 0.85367 1.90774 1.51730 1.60293 1.38557 1.22137 0.90736 0.93767 0.93972 1.22181 0.97383 0.96972 0.98627 1.21738 0.98952 0.92920 0.90475 1.20197 0.98454 1.06415 0.93187 1.20628 0.81342 0.76296 0.83746 1.90897 1.23903 1.43235 1.82088 1.84543 1.47055 1.74246 1.26232 1.23235 0.93363 0.88994 0.94518 1.67790 1.33876 1.16034 0.99853 0.95656 0.94484 0.93016 0.88032 0.94817 0.92524 0.76498 0.82218 0.82853 0.72383 0.80723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.62 2.24 -69.08 -0.15 6.46 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.31 11.29 55.43 0.63 -23.69 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.68 -14.22 5.01 -55.72 -0.28 -14.50 16 14 C 0.55 10.78 6.39 -12.10 -0.08 10.70 16 15 O -0.54 -11.84 13.44 5.37 0.07 -11.77 16 16 C 0.13 2.08 6.75 -82.93 -0.56 1.52 16 17 C -0.13 -1.71 9.62 -39.11 -0.38 -2.08 16 18 C -0.02 -0.17 9.71 -38.88 -0.38 -0.54 16 19 C -0.18 -1.93 5.89 -104.74 -0.62 -2.54 16 20 C 0.54 5.25 8.28 34.68 0.29 5.54 16 21 O -0.51 -6.27 17.20 -19.22 -0.33 -6.60 16 22 O -0.51 -3.35 12.70 -40.47 -0.51 -3.86 16 23 C 0.16 1.79 10.78 -17.16 -0.18 1.61 16 24 N -0.46 -6.68 9.52 -9.47 -0.09 -6.77 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 27 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 28 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.40 7.78 7.86 -40.82 -0.32 7.46 16 32 H 0.16 1.98 7.63 -52.49 -0.40 1.58 16 33 H 0.15 1.39 7.73 -52.49 -0.41 0.99 16 34 H 0.42 0.85 9.11 45.56 0.42 1.26 16 35 H 0.18 1.48 7.62 -52.49 -0.40 1.08 16 LS Contribution 306.96 15.07 4.63 4.63 Total: -1.00 -31.23 306.96 -6.10 -37.33 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -2.90 Total: 7.68 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.28 Total: 2.16 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.26 Total: -44.95 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.77 Total: -22.23 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.23 -6.10 -37.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.397 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds