Wall clock time and date at job start Tue Mar 31 2020 00:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47304 * 2 1 4 4 H 1.08993 * 109.46934 * 304.99990 * 3 2 1 5 5 C 1.50705 * 109.46960 * 184.99941 * 3 2 1 6 6 H 1.07999 * 119.99828 * 240.00305 * 5 3 2 7 7 C 1.37875 * 119.99914 * 60.00211 * 5 3 2 8 8 N 1.31517 * 120.00056 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99889 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47221 * 90.00080 * 9 7 5 11 11 H 1.48503 * 109.46797 * 209.99802 * 9 7 5 12 12 H 1.48493 * 109.46906 * 329.99717 * 9 7 5 13 13 N 1.46495 * 109.46756 * 65.00217 * 3 2 1 14 14 C 1.34781 * 120.00113 * 274.99196 * 13 3 2 15 15 O 1.21491 * 119.99486 * 0.02562 * 14 13 3 16 16 C 1.48337 * 120.00321 * 180.02562 * 14 13 3 17 17 C 1.39305 * 119.56917 * 180.02562 * 16 14 13 18 18 C 1.38444 * 119.19844 * 179.97438 * 17 16 14 19 19 C 1.39912 * 118.35214 * 0.25238 * 18 17 16 20 20 C 1.47893 * 120.47080 * 179.72763 * 19 18 17 21 21 O 1.21447 * 119.99720 * 359.97438 * 20 19 18 22 22 O 1.34692 * 120.00592 * 179.97438 * 20 19 18 23 23 C 1.39776 * 119.06306 * 359.52496 * 19 18 17 24 24 N 1.31411 * 120.71042 * 0.48126 * 23 19 18 25 25 H 1.08995 * 109.47191 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47103 * 300.00009 * 1 2 3 27 27 H 1.08998 * 109.46953 * 59.99807 * 1 2 3 28 28 H 1.09001 * 109.47103 * 239.99991 * 2 1 3 29 29 H 1.08998 * 109.46953 * 120.00193 * 2 1 3 30 30 H 0.97002 * 119.99738 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00528 * 95.00685 * 13 3 2 32 32 H 1.08001 * 120.39767 * 0.02562 * 17 16 14 33 33 H 1.08002 * 120.82110 * 179.97438 * 18 17 16 34 34 H 0.96694 * 116.99951 * 179.97438 * 22 20 19 35 35 H 1.07997 * 119.64238 * 180.23080 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3365 -2.1729 9 14 6.0051 0.8798 -1.3811 10 1 6.5538 -0.3523 -0.7598 11 1 6.3836 0.9212 -2.8165 12 1 6.5576 2.0716 -0.6889 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3407 2.6320 0.4327 16 6 0.0430 3.3281 2.6343 17 6 -1.2176 3.9108 2.7437 18 6 -1.5759 4.5276 3.9302 19 6 -0.6475 4.5449 4.9768 20 6 -0.9789 5.1963 6.2625 21 8 -2.0632 5.7216 6.4154 22 8 -0.0783 5.2070 7.2640 23 6 0.5960 3.9341 4.7916 24 7 0.8976 3.3587 3.6493 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0619 -2.9495 31 1 2.2720 2.1231 1.9978 32 1 -1.9073 3.8810 1.9131 33 1 -2.5462 4.9881 4.0434 34 1 -0.3403 5.6450 8.0853 35 1 1.3182 3.9387 5.5945 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:55 Heat of formation + Delta-G solvation = -118.431235 kcal Electronic energy + Delta-G solvation = -20887.282290 eV Core-core repulsion = 17463.269379 eV Total energy + Delta-G solvation = -3424.012911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.01152 -40.99748 -39.90056 -37.16620 -37.00618 -34.52295 -33.82236 -33.05405 -32.40567 -29.10439 -27.02283 -25.01653 -24.73386 -23.33313 -22.11376 -21.20395 -19.75790 -19.29269 -18.48336 -17.81388 -17.68046 -16.97457 -16.81001 -16.41883 -16.19534 -15.83312 -15.27121 -14.90865 -14.63999 -14.53536 -14.30781 -13.85310 -13.67196 -13.45827 -13.16320 -12.91204 -12.66208 -12.63083 -12.17932 -12.07197 -11.98913 -11.61024 -11.26003 -11.22434 -11.05058 -10.64297 -10.52545 -10.47767 -9.68250 -8.15716 -6.32779 -0.99282 0.05022 1.14108 1.46500 1.46848 1.57474 1.87026 1.90238 2.24206 2.47560 2.74001 3.08155 3.14049 3.58181 3.65547 3.77829 3.96040 4.15890 4.49747 4.56952 4.62403 4.72839 4.81013 4.85438 5.06057 5.24931 5.29043 5.42285 5.49613 5.51882 5.59894 5.78015 5.88152 6.15497 6.47283 6.73105 6.89494 6.92652 7.29063 7.44786 8.89659 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.003859 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.977081 B = 7253.488909 C = 7972.756290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.275 3.725 4 H 0.006 0.994 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.970 3.030 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.681 5.681 14 C 0.546 3.454 15 O -0.567 6.567 16 C 0.107 3.893 17 C -0.126 4.126 18 C -0.005 4.005 19 C -0.169 4.169 20 C 0.548 3.452 21 O -0.536 6.536 22 O -0.497 6.497 23 C 0.164 3.836 24 N -0.481 5.481 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.408 0.592 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.439 0.561 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 7.785 18.003 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.191 1.191 13 N -0.328 5.328 14 C 0.330 3.670 15 O -0.447 6.447 16 C -0.030 4.030 17 C -0.147 4.147 18 C -0.031 4.031 19 C -0.172 4.172 20 C 0.392 3.608 21 O -0.428 6.428 22 O -0.311 6.311 23 C 0.003 3.997 24 N -0.192 5.192 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.244 0.756 32 H 0.179 0.821 33 H 0.193 0.807 34 H 0.303 0.697 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.967 7.190 16.685 19.124 hybrid contribution 0.105 0.529 0.339 0.637 sum -5.863 7.719 17.025 19.591 Atomic orbital electron populations 1.21691 0.96798 0.99405 1.00311 1.21799 0.93935 0.98858 1.01468 1.18522 0.93930 0.89413 0.80903 0.97569 1.21548 0.91325 1.39215 1.06783 0.91303 1.25726 1.03275 0.94263 0.94902 1.70033 1.37028 1.38174 1.09856 0.85376 0.79142 0.78844 0.77171 1.19656 1.21111 1.19077 1.46227 1.14911 1.53777 1.17883 1.18355 0.82748 0.79274 0.86613 1.90743 1.52384 1.61266 1.40294 1.21485 0.92326 0.96200 0.92958 1.22186 0.96264 0.96649 0.99617 1.21944 0.99851 0.91812 0.89473 1.20394 0.97982 1.05116 0.93741 1.20295 0.81128 0.75568 0.83816 1.90908 1.25022 1.44306 1.82540 1.84490 1.45857 1.74005 1.26743 1.23671 0.94145 0.87928 0.93927 1.67687 1.34038 1.16989 1.00506 0.93365 0.94070 0.94987 0.90573 0.94203 0.92498 0.75584 0.82128 0.80664 0.69728 0.77752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.94 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.17 2.24 44.25 0.10 14.27 16 4 H 0.01 0.39 7.58 -2.39 -0.02 0.37 16 5 C -0.55 -29.34 8.73 25.60 0.22 -29.11 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.02 1.00 5.29 84.65 0.45 1.45 16 8 N -0.91 -51.67 11.29 21.45 0.24 -51.43 16 9 Si 0.97 42.01 29.54 68.60 2.03 44.03 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 N -0.68 -29.32 5.01 -448.51 -2.25 -31.57 16 14 C 0.55 22.10 6.39 86.93 0.56 22.65 16 15 O -0.57 -26.07 13.44 -3.69 -0.05 -26.12 16 16 C 0.11 3.34 6.75 41.96 0.28 3.62 16 17 C -0.13 -3.17 9.62 22.58 0.22 -2.95 16 18 C -0.01 -0.10 9.71 22.72 0.22 0.12 16 19 C -0.17 -3.13 5.89 -19.94 -0.12 -3.24 16 20 C 0.55 8.81 8.28 70.38 0.58 9.39 16 21 O -0.54 -11.50 17.20 20.01 0.34 -11.15 16 22 O -0.50 -4.48 12.70 -56.01 -0.71 -5.19 16 23 C 0.16 3.23 10.78 85.13 0.92 4.15 16 24 N -0.48 -13.18 9.52 -183.87 -1.75 -14.93 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.04 1.77 5.64 -2.39 -0.01 1.76 16 27 H 0.03 1.51 7.84 -2.39 -0.02 1.49 16 28 H 0.08 4.16 5.95 -2.39 -0.01 4.15 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.41 16.06 7.86 -92.71 -0.73 15.33 16 32 H 0.16 3.94 7.63 -2.91 -0.02 3.92 16 33 H 0.18 2.67 7.73 -2.91 -0.02 2.64 16 34 H 0.44 -0.07 9.11 -74.06 -0.67 -0.74 16 35 H 0.21 2.68 7.62 -2.91 -0.02 2.66 16 Total: -1.00 -69.04 306.96 1.82 -67.22 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -0.25 Total: 19.57 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 4.21 Total: 9.58 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -3.76 Total: -97.93 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.42 Total: -42.47 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -69.04 1.82 -67.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.213 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds