Wall clock time and date at job start Tue Mar 31 2020 00:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21492 * 120.00051 * 359.97438 * 14 13 3 16 16 C 1.48348 * 120.00327 * 180.02562 * 14 13 3 17 17 C 1.39308 * 119.56747 * 179.72868 * 16 14 13 18 18 C 1.38442 * 119.19544 * 179.72950 * 17 16 14 19 19 C 1.39912 * 118.35102 * 0.52795 * 18 17 16 20 20 C 1.47897 * 120.46710 * 179.75427 * 19 18 17 21 21 O 1.21441 * 119.99905 * 359.97438 * 20 19 18 22 22 O 1.34696 * 119.99756 * 179.97438 * 20 19 18 23 23 C 1.39771 * 119.06560 * 359.72995 * 19 18 17 24 24 N 1.31411 * 120.71442 * 359.97438 * 23 19 18 25 25 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 26 26 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 28 28 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 29 29 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 30 30 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 32 32 H 1.08003 * 120.39668 * 359.97438 * 17 16 14 33 33 H 1.07997 * 120.82525 * 180.25905 * 18 17 16 34 34 H 0.96704 * 116.99994 * 179.97438 * 22 20 19 35 35 H 1.08004 * 119.64665 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3408 2.6320 -0.4328 16 6 0.0427 3.3272 -2.6348 17 6 -1.2198 3.9054 -2.7459 18 6 -1.5761 4.5268 -3.9306 19 6 -0.6501 4.5386 -4.9793 20 6 -0.9838 5.1846 -6.2672 21 8 -2.0683 5.7093 -6.4202 22 8 -0.0849 5.1908 -7.2703 23 6 0.5951 3.9318 -4.7925 24 7 0.8971 3.3572 -3.6499 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 5.8763 0.4948 2.1200 31 1 2.2721 2.1230 -1.9977 32 1 -1.9107 3.8727 -1.9164 33 1 -2.5464 4.9872 -4.0440 34 1 -0.3486 5.6248 -8.0933 35 1 1.3169 3.9350 -5.5959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:57 Heat of formation + Delta-G solvation = -87.251640 kcal Electronic energy + Delta-G solvation = -20965.230785 eV Core-core repulsion = 17542.569923 eV Total energy + Delta-G solvation = -3422.660862 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10082 -40.03889 -38.71425 -36.51516 -35.46021 -33.22529 -32.29744 -31.99441 -31.27056 -27.72440 -25.98968 -23.87492 -22.90941 -22.33081 -21.02911 -19.72683 -18.74925 -18.24897 -17.61091 -16.67115 -16.30901 -16.08077 -15.60992 -15.03244 -14.99187 -14.54994 -14.07410 -13.79217 -13.54903 -13.42396 -13.06659 -12.73916 -12.39032 -12.01010 -11.94334 -11.82135 -11.20576 -11.13167 -10.95150 -10.66648 -10.32481 -10.12271 -9.94793 -9.64410 -9.50564 -9.32303 -9.25584 -8.77614 -8.15007 -6.21883 -4.24877 -0.05307 0.91911 2.00783 2.53251 2.99073 3.22415 3.34505 3.38340 3.51925 3.82726 4.08686 4.30086 4.41639 4.47063 4.76367 4.85398 5.10659 5.11145 5.46036 5.64191 5.73412 5.92539 5.99014 6.02764 6.12275 6.18733 6.61143 6.65354 6.78006 6.89389 7.16414 7.23369 7.40424 7.45272 7.50157 8.09889 8.47008 8.69021 8.82356 9.37783 10.90109 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034282 B = 0.003896 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.558434 B = 7184.723392 C = 7706.104022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.240 3.760 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.082 0.918 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.670 5.670 14 C 0.550 3.450 15 O -0.537 6.537 16 C 0.130 3.870 17 C -0.130 4.130 18 C -0.015 4.015 19 C -0.176 4.176 20 C 0.536 3.464 21 O -0.511 6.511 22 O -0.508 6.508 23 C 0.161 3.839 24 N -0.463 5.463 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.268 0.732 31 H 0.407 0.593 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.418 0.582 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.733 6.025 -14.200 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.136 3.864 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.100 0.900 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.317 5.317 14 C 0.332 3.668 15 O -0.415 6.415 16 C -0.008 4.008 17 C -0.150 4.150 18 C -0.041 4.041 19 C -0.180 4.180 20 C 0.380 3.620 21 O -0.401 6.401 22 O -0.320 6.320 23 C 0.000 4.000 24 N -0.174 5.174 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.243 0.757 32 H 0.178 0.822 33 H 0.172 0.828 34 H 0.277 0.723 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.432 5.470 -12.916 18.095 hybrid contribution -1.054 0.233 -0.379 1.144 sum -12.486 5.702 -13.295 19.110 Atomic orbital electron populations 1.21887 0.96956 0.99232 1.02152 1.22296 0.94340 0.99743 1.01385 1.19280 0.95996 0.88649 0.82429 0.93014 1.21034 0.88403 1.40123 1.07859 0.89968 1.24825 0.94874 0.95110 0.97613 1.69864 1.08699 1.44435 1.29700 0.86918 0.80985 0.79995 0.80943 1.20173 1.22110 1.18418 1.46127 1.14150 1.53121 1.18334 1.17838 0.83548 0.79902 0.85523 1.90770 1.51799 1.60288 1.38649 1.21993 0.90830 0.94156 0.93828 1.22165 0.97271 0.96920 0.98688 1.21740 0.99020 0.92873 0.90451 1.20216 0.98390 1.06270 0.93123 1.20612 0.81368 0.76251 0.83804 1.90898 1.23854 1.43101 1.82206 1.84546 1.47048 1.74405 1.26025 1.23252 0.93348 0.88905 0.94491 1.67789 1.33820 1.15906 0.99847 0.93134 0.94774 0.92735 0.92068 0.92539 0.92239 0.75727 0.82214 0.82792 0.72319 0.80588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.51 37.16 0.32 -2.52 16 2 C -0.14 -3.03 5.11 -26.73 -0.14 -3.17 16 3 C 0.24 5.59 1.83 -69.09 -0.13 5.47 16 4 H 0.05 1.32 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -14.36 9.31 -34.44 -0.32 -14.68 16 6 H 0.08 2.33 7.98 -52.49 -0.42 1.92 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 9 Si 0.88 21.36 24.41 -169.99 -4.15 17.21 16 10 H -0.27 -6.45 6.84 56.52 0.39 -6.06 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.18 6.52 56.52 0.37 -5.81 16 13 N -0.67 -13.43 5.01 -55.73 -0.28 -13.71 16 14 C 0.55 10.21 6.39 -12.10 -0.08 10.13 16 15 O -0.54 -11.05 13.44 5.37 0.07 -10.98 16 16 C 0.13 1.94 6.75 -82.93 -0.56 1.38 16 17 C -0.13 -1.58 9.62 -39.11 -0.38 -1.96 16 18 C -0.02 -0.16 9.71 -38.88 -0.38 -0.53 16 19 C -0.18 -1.81 5.89 -104.74 -0.62 -2.43 16 20 C 0.54 5.06 8.28 34.69 0.29 5.34 16 21 O -0.51 -6.08 17.20 -19.22 -0.33 -6.41 16 22 O -0.51 -3.21 12.70 -40.48 -0.51 -3.72 16 23 C 0.16 1.73 10.78 -17.16 -0.18 1.55 16 24 N -0.46 -6.40 9.52 -9.46 -0.09 -6.49 16 25 H 0.05 0.96 5.64 -51.93 -0.29 0.67 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 1.11 7.84 -51.93 -0.41 0.70 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.29 3.24 -51.93 -0.17 1.12 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.41 7.69 7.86 -40.82 -0.32 7.37 16 32 H 0.16 1.83 7.63 -52.48 -0.40 1.42 16 33 H 0.15 1.31 7.73 -52.49 -0.41 0.90 16 34 H 0.42 0.75 9.11 45.56 0.42 1.16 16 35 H 0.18 1.44 7.62 -52.48 -0.40 1.04 16 LS Contribution 300.21 15.07 4.52 4.52 Total: -1.00 -32.47 300.21 -5.04 -37.50 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -2.77 Total: 6.76 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -2.27 Total: 0.70 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.40 Total: -45.58 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.77 Total: -21.11 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.15 Total: 17.21 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.47 -5.04 -37.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.749 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds