Wall clock time and date at job start Tue Mar 31 2020 00:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21492 * 120.00051 * 359.97438 * 14 13 3 16 16 C 1.48348 * 120.00327 * 180.02562 * 14 13 3 17 17 C 1.39308 * 119.56747 * 179.72868 * 16 14 13 18 18 C 1.38442 * 119.19544 * 179.72950 * 17 16 14 19 19 C 1.39912 * 118.35102 * 0.52795 * 18 17 16 20 20 C 1.47897 * 120.46710 * 179.75427 * 19 18 17 21 21 O 1.21441 * 119.99905 * 359.97438 * 20 19 18 22 22 O 1.34696 * 119.99756 * 179.97438 * 20 19 18 23 23 C 1.39771 * 119.06560 * 359.72995 * 19 18 17 24 24 N 1.31411 * 120.71442 * 359.97438 * 23 19 18 25 25 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 26 26 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 28 28 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 29 29 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 30 30 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 32 32 H 1.08003 * 120.39668 * 359.97438 * 17 16 14 33 33 H 1.07997 * 120.82525 * 180.25905 * 18 17 16 34 34 H 0.96704 * 116.99994 * 179.97438 * 22 20 19 35 35 H 1.08004 * 119.64665 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3408 2.6320 -0.4328 16 6 0.0427 3.3272 -2.6348 17 6 -1.2198 3.9054 -2.7459 18 6 -1.5761 4.5268 -3.9306 19 6 -0.6501 4.5386 -4.9793 20 6 -0.9838 5.1846 -6.2672 21 8 -2.0683 5.7093 -6.4202 22 8 -0.0849 5.1908 -7.2703 23 6 0.5951 3.9318 -4.7925 24 7 0.8971 3.3572 -3.6499 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 5.8763 0.4948 2.1200 31 1 2.2721 2.1230 -1.9977 32 1 -1.9107 3.8727 -1.9164 33 1 -2.5464 4.9872 -4.0440 34 1 -0.3486 5.6248 -8.0933 35 1 1.3169 3.9350 -5.5959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:57 Heat of formation + Delta-G solvation = -112.433099 kcal Electronic energy + Delta-G solvation = -20966.322735 eV Core-core repulsion = 17542.569923 eV Total energy + Delta-G solvation = -3423.752812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.03611 -41.04855 -39.97886 -37.18331 -37.17201 -34.55398 -34.01477 -33.20264 -32.59223 -29.53687 -27.10046 -24.80912 -24.61770 -23.47813 -22.32248 -21.33867 -19.87084 -19.31953 -18.56346 -18.06234 -17.75362 -17.22100 -16.81717 -16.42597 -16.31292 -15.83551 -15.27361 -15.17144 -14.77246 -14.64616 -14.32281 -14.04052 -13.82094 -13.68126 -13.59255 -12.96646 -12.76515 -12.63671 -12.40283 -11.99339 -11.85126 -11.48452 -11.26503 -11.23000 -11.20090 -10.85938 -10.64999 -10.48958 -9.82569 -8.36949 -6.43489 -1.00685 0.04514 1.11775 1.29359 1.37126 1.46903 1.85613 1.86607 2.18752 2.27459 2.71612 2.98562 3.03313 3.57311 3.63829 3.74373 3.93370 4.14541 4.23453 4.32084 4.44509 4.61697 4.75948 4.83220 4.86509 5.01080 5.11097 5.21424 5.27855 5.38238 5.49144 5.51052 5.58579 6.10337 6.45721 6.58260 6.81726 6.90544 7.14839 7.30880 8.78382 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034282 B = 0.003896 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.558434 B = 7184.723392 C = 7706.104022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.247 3.753 4 H 0.030 0.970 5 C -0.537 4.537 6 H 0.053 0.947 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.938 3.062 10 H -0.258 1.258 11 H -0.293 1.293 12 H -0.256 1.256 13 N -0.677 5.677 14 C 0.551 3.449 15 O -0.560 6.560 16 C 0.105 3.895 17 C -0.123 4.123 18 C -0.006 4.006 19 C -0.168 4.168 20 C 0.547 3.453 21 O -0.536 6.536 22 O -0.497 6.497 23 C 0.163 3.837 24 N -0.482 5.482 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.270 0.730 31 H 0.411 0.589 32 H 0.165 0.835 33 H 0.177 0.823 34 H 0.439 0.561 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 6.150 -15.757 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.143 3.857 4 H 0.048 0.952 5 C -0.575 4.575 6 H 0.071 0.929 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.764 3.236 10 H -0.184 1.184 11 H -0.220 1.220 12 H -0.180 1.180 13 N -0.325 5.325 14 C 0.336 3.664 15 O -0.440 6.440 16 C -0.032 4.032 17 C -0.143 4.143 18 C -0.031 4.031 19 C -0.171 4.171 20 C 0.391 3.609 21 O -0.427 6.427 22 O -0.312 6.312 23 C 0.002 3.998 24 N -0.194 5.194 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.247 0.753 32 H 0.183 0.817 33 H 0.194 0.806 34 H 0.303 0.697 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -13.308 5.604 -14.521 20.478 hybrid contribution -0.450 0.325 -0.102 0.564 sum -13.758 5.928 -14.623 20.935 Atomic orbital electron populations 1.21778 0.94973 1.00840 1.01659 1.22212 0.96060 0.98140 1.01211 1.18926 0.93467 0.89935 0.83392 0.95179 1.21264 0.90278 1.39018 1.06932 0.92868 1.25572 0.95801 0.95762 0.99857 1.69982 1.10404 1.46084 1.30765 0.86014 0.79431 0.80011 0.78104 1.18403 1.22048 1.17984 1.45959 1.15227 1.53985 1.17340 1.18289 0.82425 0.78966 0.86695 1.90740 1.52215 1.61006 1.40034 1.21443 0.92354 0.96484 0.92888 1.22200 0.96132 0.96372 0.99631 1.21960 0.99854 0.91810 0.89502 1.20402 0.97947 1.05064 0.93695 1.20318 0.81136 0.75534 0.83898 1.90906 1.24951 1.44200 1.82661 1.84498 1.45944 1.74169 1.26564 1.23636 0.94140 0.88042 0.93939 1.67691 1.34175 1.16924 1.00574 0.93020 0.92043 0.93848 0.91459 0.93408 0.92027 0.75289 0.81711 0.80593 0.69729 0.78001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.51 71.98 0.61 -4.46 16 2 C -0.14 -5.89 5.11 30.59 0.16 -5.74 16 3 C 0.25 11.67 1.83 44.25 0.08 11.75 16 4 H 0.03 1.56 6.63 -2.39 -0.02 1.55 16 5 C -0.54 -29.55 9.31 25.60 0.24 -29.31 16 6 H 0.05 3.16 7.98 -2.91 -0.02 3.13 16 7 C 0.03 1.69 5.45 84.66 0.46 2.15 16 8 N -0.93 -56.16 13.96 21.45 0.30 -55.86 16 9 Si 0.94 44.23 24.41 68.60 1.67 45.91 16 10 H -0.26 -11.43 6.84 99.48 0.68 -10.75 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.26 -11.79 6.52 99.48 0.65 -11.15 16 13 N -0.68 -27.55 5.01 -448.52 -2.25 -29.79 16 14 C 0.55 20.53 6.39 86.94 0.56 21.09 16 15 O -0.56 -23.08 13.44 -3.69 -0.05 -23.12 16 16 C 0.11 3.06 6.75 41.96 0.28 3.35 16 17 C -0.12 -2.80 9.62 22.58 0.22 -2.59 16 18 C -0.01 -0.10 9.71 22.72 0.22 0.12 16 19 C -0.17 -2.97 5.89 -19.94 -0.12 -3.09 16 20 C 0.55 8.56 8.28 70.38 0.58 9.14 16 21 O -0.54 -11.19 17.20 20.03 0.34 -10.85 16 22 O -0.50 -4.46 12.70 -56.05 -0.71 -5.17 16 23 C 0.16 3.14 10.78 85.13 0.92 4.06 16 24 N -0.48 -12.81 9.52 -183.85 -1.75 -14.56 16 25 H 0.05 1.91 5.64 -2.39 -0.01 1.90 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.04 1.71 7.84 -2.39 -0.02 1.69 16 28 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.05 2.12 3.24 -2.39 -0.01 2.11 16 30 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.41 15.90 7.86 -92.71 -0.73 15.17 16 32 H 0.17 3.55 7.63 -2.91 -0.02 3.53 16 33 H 0.18 2.43 7.73 -2.91 -0.02 2.40 16 34 H 0.44 -0.08 9.11 -74.05 -0.67 -0.76 16 35 H 0.20 2.69 7.62 -2.91 -0.02 2.66 16 Total: -1.00 -70.79 300.21 1.45 -69.35 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.32 Total: 17.63 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 4.21 Total: 6.47 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -3.70 Total: -100.22 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.42 Total: -39.14 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.67 Total: 45.91 kcal Total: -70.79 1.45 -69.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.088 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds