Wall clock time and date at job start Mon Mar 30 2020 23:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.46729 * 2 1 4 4 C 1.38662 * 120.75464 * 269.98264 * 3 2 1 5 5 C 1.38554 * 119.36754 * 180.02562 * 4 3 2 6 6 N 1.31528 * 120.91219 * 0.02562 * 5 4 3 7 7 C 1.32784 * 121.62939 * 359.65111 * 6 5 4 8 8 C 1.48009 * 119.73080 * 180.31625 * 7 6 5 9 9 O 1.21570 * 120.00025 * 174.50063 * 8 7 6 10 10 N 1.34773 * 119.99931 * 354.50465 * 8 7 6 11 11 C 1.36774 * 120.00339 * 4.83973 * 10 8 7 12 12 H 1.08009 * 119.99854 * 312.00070 * 11 10 8 13 13 C 1.39110 * 120.00451 * 131.99825 * 11 10 8 14 14 N 1.31324 * 119.99534 * 3.26083 * 13 11 10 15 15 Si 1.86802 * 120.00204 * 183.25721 * 13 11 10 16 16 H 1.48497 * 109.46778 * 60.00494 * 15 13 11 17 17 H 1.48500 * 109.47046 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47108 * 300.00229 * 15 13 11 19 19 C 1.46508 * 119.99728 * 184.83854 * 10 8 7 20 20 C 1.50694 * 109.47028 * 84.56173 * 19 10 8 21 21 O 1.20831 * 120.00281 * 0.02562 * 20 19 10 22 22 O 1.34224 * 120.00135 * 179.97438 * 20 19 10 23 23 C 1.38544 * 120.74550 * 90.00342 * 3 2 1 24 24 H 1.08993 * 109.46771 * 299.99170 * 1 2 3 25 25 H 1.08996 * 109.47142 * 59.99655 * 1 2 3 26 26 H 1.09003 * 109.46434 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46448 * 240.01091 * 2 1 3 28 28 H 1.08996 * 109.47142 * 120.00345 * 2 1 3 29 29 H 1.07998 * 120.31650 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.53888 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99544 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.46639 * 204.55797 * 19 10 8 33 33 H 1.08992 * 109.47212 * 324.55996 * 19 10 8 34 34 H 0.96700 * 117.00172 * 180.02562 * 22 20 19 35 35 H 1.08001 * 120.47456 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2690 2.0893 -1.1916 5 6 2.7311 3.3950 -1.1581 6 7 2.9477 4.0059 -0.0136 7 6 2.7279 3.4042 1.1495 8 6 2.9794 4.1338 2.4125 9 8 2.6861 3.6252 3.4770 10 7 3.5335 5.3620 2.3823 11 6 3.7722 5.9754 1.1834 12 1 4.2656 5.4348 0.3890 13 6 3.3795 7.2954 0.9870 14 7 2.8377 7.9728 1.9729 15 14 3.6231 8.1043 -0.6791 16 1 2.8691 7.3484 -1.7112 17 1 3.1253 9.5024 -0.6281 18 1 5.0678 8.1048 -1.0227 19 6 3.8800 6.0401 3.6339 20 6 5.2417 5.5847 4.0916 21 8 5.8595 4.7769 3.4391 22 8 5.7686 6.0771 5.2236 23 6 2.2684 2.0886 1.1907 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8902 28 1 1.8934 -0.5139 0.8899 29 1 2.0955 1.5965 -2.1368 30 1 2.9167 3.9181 -2.0846 31 1 2.5642 8.8934 1.8360 32 1 3.8930 7.1179 3.4716 33 1 3.1402 5.7963 4.3962 34 1 6.6448 5.7553 5.4763 35 1 2.0948 1.5985 2.1373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597621590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:57 Heat of formation + Delta-G solvation = -77.030201 kcal Electronic energy + Delta-G solvation = -21776.148308 eV Core-core repulsion = 18353.930681 eV Total energy + Delta-G solvation = -3422.217627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04608 -39.37886 -37.88014 -35.40201 -34.90695 -34.51751 -31.56009 -30.82744 -30.04073 -27.89647 -25.03671 -24.21583 -23.34155 -21.73723 -20.84943 -19.26799 -17.67590 -17.35707 -16.49143 -15.84688 -15.59375 -15.28814 -14.88824 -14.65799 -14.40405 -14.10565 -14.03875 -13.57016 -13.40741 -12.86419 -12.85021 -12.32519 -11.95387 -11.64469 -11.47519 -11.40550 -11.27923 -11.09430 -10.91989 -10.77418 -10.57941 -10.38667 -9.76806 -9.21177 -9.12339 -9.05969 -8.58802 -8.33423 -7.47704 -6.35507 -4.09175 1.33072 1.75551 3.10749 3.21376 3.25151 3.28121 3.48888 3.87232 4.21265 4.48246 4.67638 4.80174 4.94437 5.09147 5.19978 5.33935 5.41586 5.49639 5.63142 5.66147 5.84987 5.98124 6.09054 6.18122 6.19299 6.26064 6.35509 6.50003 6.70200 6.89253 7.15276 7.20062 7.64594 7.79138 8.46361 8.58938 8.72800 9.07443 9.31306 9.75446 10.68421 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.007118 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.010307 B = 3933.012584 C = 5232.167521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.059 4.059 4 C -0.172 4.172 5 C 0.083 3.917 6 N -0.409 5.409 7 C 0.119 3.881 8 C 0.527 3.473 9 O -0.595 6.595 10 N -0.402 5.402 11 C -0.292 4.292 12 H 0.117 0.883 13 C 0.037 3.963 14 N -0.886 5.886 15 Si 0.930 3.070 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.114 3.886 20 C 0.461 3.539 21 O -0.519 6.519 22 O -0.526 6.526 23 C -0.127 4.127 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.151 0.849 31 H 0.272 0.728 32 H 0.159 0.841 33 H 0.099 0.901 34 H 0.394 0.606 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 -7.742 -3.990 8.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.067 4.067 4 C -0.192 4.192 5 C -0.076 4.076 6 N -0.120 5.120 7 C -0.020 4.020 8 C 0.317 3.683 9 O -0.480 6.480 10 N -0.118 5.118 11 C -0.421 4.421 12 H 0.134 0.866 13 C -0.167 4.167 14 N -0.525 5.525 15 Si 0.757 3.243 16 H -0.194 1.194 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.011 4.011 20 C 0.303 3.697 21 O -0.406 6.406 22 O -0.336 6.336 23 C -0.148 4.148 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.144 0.856 30 H 0.168 0.832 31 H 0.083 0.917 32 H 0.176 0.824 33 H 0.117 0.883 34 H 0.251 0.749 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.272 -6.973 -3.690 7.991 hybrid contribution 0.447 -0.516 -0.730 0.999 sum -0.825 -7.488 -4.420 8.734 Atomic orbital electron populations 1.21744 0.94577 1.01562 1.02509 1.20508 0.96280 0.92152 1.02915 1.20139 0.97335 0.96330 0.92904 1.22091 1.02306 0.96819 0.98013 1.23070 0.95527 0.91786 0.97246 1.68801 1.11344 1.34636 0.97219 1.21233 0.96463 0.91289 0.92971 1.18082 0.80120 0.83331 0.86814 1.90625 1.57043 1.69710 1.30666 1.42949 1.49760 1.13636 1.05504 1.20050 1.36437 0.95919 0.89685 0.86600 1.25615 0.94957 0.97256 0.98824 1.69519 1.40366 1.11130 1.31462 0.85943 0.78742 0.77503 0.82159 1.19376 1.21216 1.19937 1.21305 0.87558 1.03528 0.88670 1.25108 0.90066 0.77697 0.76812 1.90626 1.62416 1.32623 1.54964 1.84612 1.37978 1.68096 1.42960 1.21945 0.99115 0.94927 0.98789 0.92259 0.92551 0.92424 0.90929 0.90745 0.85622 0.83157 0.91707 0.82389 0.88326 0.74927 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.90 37.16 0.37 -1.16 16 2 C -0.08 -0.93 6.11 -27.88 -0.17 -1.10 16 3 C -0.06 -0.91 5.17 -104.35 -0.54 -1.45 16 4 C -0.17 -2.52 9.82 -39.31 -0.39 -2.91 16 5 C 0.08 1.43 11.18 -17.57 -0.20 1.23 16 6 N -0.41 -8.97 6.36 -9.81 -0.06 -9.03 16 7 C 0.12 2.72 6.66 -83.01 -0.55 2.17 16 8 C 0.53 13.74 7.42 -12.26 -0.09 13.64 16 9 O -0.60 -16.10 15.98 5.30 0.08 -16.01 16 10 N -0.40 -10.55 2.04 -117.12 -0.24 -10.79 16 11 C -0.29 -7.65 7.48 -15.02 -0.11 -7.76 16 12 H 0.12 3.06 5.96 -52.48 -0.31 2.75 16 13 C 0.04 0.93 5.35 -17.45 -0.09 0.84 16 14 N -0.89 -22.98 10.98 55.50 0.61 -22.37 16 15 Si 0.93 20.11 29.56 -169.99 -5.02 15.09 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 C 0.11 2.77 5.48 -5.19 -0.03 2.74 16 20 C 0.46 10.48 8.36 36.00 0.30 10.78 16 21 O -0.52 -13.20 17.06 -18.75 -0.32 -13.52 16 22 O -0.53 -9.44 13.42 -39.24 -0.53 -9.96 16 23 C -0.13 -2.42 9.34 -39.03 -0.36 -2.79 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.15 2.17 8.06 -52.48 -0.42 1.75 16 31 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.16 3.93 5.51 -51.93 -0.29 3.64 16 33 H 0.10 2.34 7.52 -51.93 -0.39 1.95 16 34 H 0.39 5.06 9.10 45.56 0.41 5.48 16 35 H 0.14 2.57 7.65 -52.49 -0.40 2.17 16 LS Contribution 309.79 15.07 4.67 4.67 Total: -1.00 -32.22 309.79 -5.74 -37.96 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -3.07 Total: 9.73 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: -1.87 Total: 14.23 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.31 Total: -42.19 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.76 Total: -39.50 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.22 -5.74 -37.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597621590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.066 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds