Wall clock time and date at job start Mon Mar 30 2020 23:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.46729 * 2 1 4 4 C 1.38662 * 120.75464 * 269.98264 * 3 2 1 5 5 C 1.38554 * 119.36754 * 180.02562 * 4 3 2 6 6 N 1.31528 * 120.91219 * 0.02562 * 5 4 3 7 7 C 1.32784 * 121.62939 * 359.65111 * 6 5 4 8 8 C 1.48009 * 119.73080 * 180.31625 * 7 6 5 9 9 O 1.21570 * 120.00025 * 174.50063 * 8 7 6 10 10 N 1.34773 * 119.99931 * 354.50465 * 8 7 6 11 11 C 1.36774 * 120.00339 * 4.83973 * 10 8 7 12 12 H 1.08009 * 119.99854 * 312.00070 * 11 10 8 13 13 C 1.39110 * 120.00451 * 131.99825 * 11 10 8 14 14 N 1.31324 * 119.99534 * 3.26083 * 13 11 10 15 15 Si 1.86802 * 120.00204 * 183.25721 * 13 11 10 16 16 H 1.48497 * 109.46778 * 60.00494 * 15 13 11 17 17 H 1.48500 * 109.47046 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47108 * 300.00229 * 15 13 11 19 19 C 1.46508 * 119.99728 * 184.83854 * 10 8 7 20 20 C 1.50694 * 109.47028 * 84.56173 * 19 10 8 21 21 O 1.20831 * 120.00281 * 0.02562 * 20 19 10 22 22 O 1.34224 * 120.00135 * 179.97438 * 20 19 10 23 23 C 1.38544 * 120.74550 * 90.00342 * 3 2 1 24 24 H 1.08993 * 109.46771 * 299.99170 * 1 2 3 25 25 H 1.08996 * 109.47142 * 59.99655 * 1 2 3 26 26 H 1.09003 * 109.46434 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46448 * 240.01091 * 2 1 3 28 28 H 1.08996 * 109.47142 * 120.00345 * 2 1 3 29 29 H 1.07998 * 120.31650 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.53888 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99544 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.46639 * 204.55797 * 19 10 8 33 33 H 1.08992 * 109.47212 * 324.55996 * 19 10 8 34 34 H 0.96700 * 117.00172 * 180.02562 * 22 20 19 35 35 H 1.08001 * 120.47456 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2690 2.0893 -1.1916 5 6 2.7311 3.3950 -1.1581 6 7 2.9477 4.0059 -0.0136 7 6 2.7279 3.4042 1.1495 8 6 2.9794 4.1338 2.4125 9 8 2.6861 3.6252 3.4770 10 7 3.5335 5.3620 2.3823 11 6 3.7722 5.9754 1.1834 12 1 4.2656 5.4348 0.3890 13 6 3.3795 7.2954 0.9870 14 7 2.8377 7.9728 1.9729 15 14 3.6231 8.1043 -0.6791 16 1 2.8691 7.3484 -1.7112 17 1 3.1253 9.5024 -0.6281 18 1 5.0678 8.1048 -1.0227 19 6 3.8800 6.0401 3.6339 20 6 5.2417 5.5847 4.0916 21 8 5.8595 4.7769 3.4391 22 8 5.7686 6.0771 5.2236 23 6 2.2684 2.0886 1.1907 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8902 28 1 1.8934 -0.5139 0.8899 29 1 2.0955 1.5965 -2.1368 30 1 2.9167 3.9181 -2.0846 31 1 2.5642 8.8934 1.8360 32 1 3.8930 7.1179 3.4716 33 1 3.1402 5.7963 4.3962 34 1 6.6448 5.7553 5.4763 35 1 2.0948 1.5985 2.1373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597621590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:56 Heat of formation + Delta-G solvation = -98.261686 kcal Electronic energy + Delta-G solvation = -21777.068974 eV Core-core repulsion = 18353.930681 eV Total energy + Delta-G solvation = -3423.138294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.69265 -41.04048 -39.65119 -37.17763 -36.70838 -35.77859 -33.49682 -32.30251 -31.21289 -29.71915 -26.89966 -25.46105 -24.84144 -23.14372 -22.40540 -21.08166 -19.38807 -19.12287 -18.19182 -17.45788 -17.04845 -16.93285 -16.59476 -16.32257 -16.16518 -15.71682 -15.58174 -14.75900 -14.69270 -14.43697 -14.27083 -13.91459 -13.35435 -13.23979 -13.14994 -13.01127 -12.76955 -12.60988 -12.44767 -12.21483 -12.09083 -11.80913 -11.63410 -11.08713 -10.93872 -10.40579 -10.08415 -9.96892 -9.35737 -8.26155 -6.06928 -0.14006 0.42593 1.26841 1.48848 1.51280 1.59521 1.78116 2.16967 2.46219 2.76795 3.03816 3.24208 3.59755 3.77289 3.92544 4.17108 4.21820 4.35964 4.42198 4.49587 4.52186 4.64438 4.74294 4.91571 4.94459 5.01861 5.06812 5.17880 5.39355 5.46120 5.59117 5.65611 5.85462 5.88820 6.54828 6.98972 7.06853 7.20307 7.41922 7.82286 8.77948 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.007118 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.010307 B = 3933.012584 C = 5232.167521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.052 4.052 4 C -0.144 4.144 5 C 0.071 3.929 6 N -0.445 5.445 7 C 0.077 3.923 8 C 0.510 3.490 9 O -0.624 6.624 10 N -0.415 5.415 11 C -0.305 4.305 12 H 0.111 0.889 13 C -0.003 4.003 14 N -0.911 5.911 15 Si 0.990 3.010 16 H -0.260 1.260 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.110 3.890 20 C 0.471 3.529 21 O -0.550 6.550 22 O -0.507 6.507 23 C -0.135 4.135 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.177 0.823 30 H 0.180 0.820 31 H 0.274 0.726 32 H 0.152 0.848 33 H 0.094 0.906 34 H 0.421 0.579 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 -9.145 -6.569 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.060 4.060 4 C -0.164 4.164 5 C -0.088 4.088 6 N -0.157 5.157 7 C -0.060 4.060 8 C 0.301 3.699 9 O -0.512 6.512 10 N -0.132 5.132 11 C -0.433 4.433 12 H 0.128 0.872 13 C -0.203 4.203 14 N -0.551 5.551 15 Si 0.813 3.187 16 H -0.185 1.185 17 H -0.208 1.208 18 H -0.195 1.195 19 C -0.015 4.015 20 C 0.314 3.686 21 O -0.440 6.440 22 O -0.320 6.320 23 C -0.156 4.156 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.195 0.805 30 H 0.197 0.803 31 H 0.084 0.916 32 H 0.169 0.831 33 H 0.111 0.889 34 H 0.282 0.718 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.423 -8.366 -6.235 10.531 hybrid contribution 0.492 -0.183 0.084 0.531 sum -0.931 -8.550 -6.151 10.574 Atomic orbital electron populations 1.21743 0.93672 1.02991 1.01822 1.20629 0.96853 0.89432 1.04629 1.20625 0.95614 0.98086 0.91637 1.22589 0.98680 0.95450 0.99699 1.23639 0.95258 0.93293 0.96650 1.68547 1.12692 1.36369 0.98074 1.20933 1.00138 0.92671 0.92244 1.18796 0.79560 0.83456 0.88109 1.90557 1.58299 1.70317 1.32001 1.43147 1.50077 1.13956 1.05979 1.20125 1.37136 0.96270 0.89803 0.87203 1.26382 0.94540 0.97396 1.02024 1.69620 1.41155 1.11386 1.32949 0.85036 0.78804 0.76581 0.78238 1.18487 1.20802 1.19490 1.21221 0.88654 1.03102 0.88480 1.24642 0.89456 0.77059 0.77442 1.90609 1.63096 1.34035 1.56299 1.84519 1.39771 1.67155 1.40553 1.22004 0.99383 0.93912 1.00309 0.94235 0.91995 0.89989 0.87761 0.90558 0.80524 0.80289 0.91561 0.83104 0.88856 0.71787 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.90 71.98 0.71 -1.84 16 2 C -0.08 -1.51 6.11 29.85 0.18 -1.32 16 3 C -0.05 -1.46 5.17 -19.69 -0.10 -1.56 16 4 C -0.14 -3.66 9.82 22.45 0.22 -3.44 16 5 C 0.07 2.29 11.18 84.81 0.95 3.24 16 6 N -0.45 -19.61 6.36 -184.94 -1.18 -20.79 16 7 C 0.08 3.63 6.66 41.88 0.28 3.91 16 8 C 0.51 27.97 7.42 86.84 0.64 28.61 16 9 O -0.62 -35.70 15.98 -3.94 -0.06 -35.77 16 10 N -0.42 -22.80 2.04 -642.72 -1.31 -24.11 16 11 C -0.30 -16.46 7.48 84.13 0.63 -15.83 16 12 H 0.11 5.97 5.96 -2.91 -0.02 5.95 16 13 C 0.00 -0.17 5.35 84.98 0.45 0.28 16 14 N -0.91 -48.44 10.98 21.69 0.24 -48.20 16 15 Si 0.99 41.15 29.56 68.60 2.03 43.18 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 19 C 0.11 5.59 5.48 85.63 0.47 6.06 16 20 C 0.47 21.91 8.36 71.23 0.60 22.50 16 21 O -0.55 -28.72 17.06 21.95 0.37 -28.35 16 22 O -0.51 -17.93 13.42 -51.36 -0.69 -18.62 16 23 C -0.13 -5.21 9.34 22.63 0.21 -5.00 16 24 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.10 1.42 8.10 -2.38 -0.02 1.40 16 28 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 29 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 32 H 0.15 7.84 5.51 -2.39 -0.01 7.83 16 33 H 0.09 4.71 7.52 -2.39 -0.02 4.69 16 34 H 0.42 10.18 9.10 -74.06 -0.67 9.51 16 35 H 0.13 5.04 7.65 -2.91 -0.02 5.02 16 Total: -1.00 -73.82 309.79 5.10 -68.71 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.46 Total: 28.32 kcal Atomic # 6 Polarization: 30.38 SS G_CDS: 5.24 Total: 35.62 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -2.25 Total: -93.10 kcal Atomic # 8 Polarization: -82.36 SS G_CDS: -0.38 Total: -82.74 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -73.82 5.10 -68.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597621590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.549 kcal (2) G-P(sol) polarization free energy of solvation -73.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds