Wall clock time and date at job start Tue Mar 31 2020 01:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47182 * 2 1 4 4 C 1.50694 * 109.47352 * 120.00747 * 2 1 3 5 5 O 1.21291 * 120.00693 * 91.51923 * 4 2 1 6 6 N 1.34779 * 120.00030 * 271.52130 * 4 2 1 7 7 C 1.37090 * 120.00523 * 176.10414 * 6 4 2 8 8 H 1.08005 * 120.00314 * 319.49570 * 7 6 4 9 9 C 1.38951 * 120.00236 * 139.21498 * 7 6 4 10 10 N 1.31411 * 120.00452 * 164.64946 * 9 7 6 11 11 Si 1.86806 * 119.99697 * 344.64853 * 9 7 6 12 12 H 1.48491 * 109.47102 * 90.83480 * 11 9 7 13 13 H 1.48505 * 109.47011 * 210.83311 * 11 9 7 14 14 H 1.48502 * 109.46999 * 330.82886 * 11 9 7 15 15 C 1.46502 * 119.99533 * 356.10938 * 6 4 2 16 16 C 1.50699 * 109.47348 * 95.51653 * 15 6 4 17 17 O 1.20819 * 119.99976 * 3.16423 * 16 15 6 18 18 O 1.34231 * 119.99926 * 183.16349 * 16 15 6 19 19 C 1.50702 * 109.46602 * 240.00409 * 2 1 3 20 20 C 1.38227 * 119.62135 * 324.99897 * 19 2 1 21 21 C 1.38625 * 119.16316 * 179.97438 * 20 19 2 22 22 C 1.38676 * 118.41918 * 359.97438 * 21 20 19 23 23 C 1.38181 * 119.16531 * 359.97438 * 22 21 20 24 24 N 1.31855 * 119.61753 * 144.72813 * 19 2 1 25 25 H 1.08994 * 109.47285 * 180.13403 * 1 2 3 26 26 H 1.09005 * 109.46391 * 300.13093 * 1 2 3 27 27 H 1.08995 * 109.47201 * 60.12395 * 1 2 3 28 28 H 0.97001 * 120.00299 * 179.97438 * 10 9 7 29 29 H 1.09004 * 109.47086 * 215.51686 * 15 6 4 30 30 H 1.08997 * 109.47177 * 335.51296 * 15 6 4 31 31 H 0.96704 * 116.99824 * 179.97438 * 18 16 15 32 32 H 1.08004 * 120.41528 * 0.02562 * 20 19 2 33 33 H 1.08000 * 120.79459 * 180.02562 * 21 20 19 34 34 H 1.08004 * 120.42182 * 180.02562 * 22 21 20 35 35 H 1.07994 * 119.61822 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.2609 -1.9011 1.1924 6 7 2.2279 -0.0230 2.3730 7 6 2.6080 -0.6823 3.5132 8 1 2.1690 -1.6388 3.7559 9 6 3.5626 -0.1228 4.3538 10 7 3.7124 -0.5824 5.5758 11 14 4.6329 1.2827 3.7467 12 1 3.9787 2.5768 4.0665 13 1 5.9581 1.2197 4.4141 14 1 4.8129 1.1687 2.2771 15 6 2.0339 1.4289 2.3965 16 6 0.6420 1.7420 2.8819 17 8 -0.0910 0.8478 3.2321 18 8 0.2167 3.0144 2.9252 19 6 2.0323 -0.7103 -1.2306 20 6 1.3319 -1.7933 -1.7279 21 6 1.8021 -2.4393 -2.8607 22 6 2.9642 -1.9695 -3.4539 23 6 3.6100 -0.8805 -2.9005 24 7 3.1318 -0.2883 -1.8235 25 1 -0.3633 -1.0276 0.0024 26 1 -0.3632 0.5159 0.8889 27 1 -0.3633 0.5119 -0.8910 28 1 4.3790 -0.1920 6.1625 29 1 2.7634 1.8821 3.0678 30 1 2.1670 1.8295 1.3916 31 1 -0.6838 3.1657 3.2435 32 1 0.4293 -2.1313 -1.2406 33 1 1.2756 -3.2878 -3.2720 34 1 3.3592 -2.4483 -4.3379 35 1 4.5158 -0.5088 -3.3563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603138216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:20 Heat of formation + Delta-G solvation = -63.451539 kcal Electronic energy + Delta-G solvation = -22167.197855 eV Core-core repulsion = 18745.569042 eV Total energy + Delta-G solvation = -3421.628812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45466 -39.79180 -38.46945 -35.75211 -34.87549 -33.92966 -32.29380 -32.07859 -29.56487 -28.08639 -25.76293 -24.33960 -23.18072 -21.89254 -21.63552 -18.83127 -17.77312 -17.35397 -16.93527 -16.62315 -16.20009 -15.80504 -15.62278 -15.14328 -14.88569 -14.09312 -13.91085 -13.63822 -13.26343 -12.92047 -12.82053 -12.68123 -12.52864 -12.16368 -11.89170 -11.77408 -11.31469 -11.15591 -11.00557 -10.90210 -10.46468 -10.10557 -9.94871 -9.72827 -9.25124 -9.13893 -8.91816 -8.50591 -7.94101 -6.40893 -4.07022 1.28675 1.47221 2.68469 2.93372 3.12042 3.20369 3.22934 3.69054 3.93191 4.07048 4.25779 4.45343 4.86407 4.94938 4.95832 5.14260 5.20540 5.27410 5.33135 5.45702 5.47284 5.64898 5.72534 5.81213 5.91568 5.97272 6.00041 6.21017 6.34571 6.41002 6.85842 6.88509 7.44502 8.18599 8.19039 8.32981 8.42531 8.85275 9.19850 9.58590 10.70820 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.006830 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.162898 B = 4098.792565 C = 4708.038793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 H 0.101 0.899 4 C 0.494 3.506 5 O -0.540 6.540 6 N -0.449 5.449 7 C -0.305 4.305 8 H 0.108 0.892 9 C 0.059 3.941 10 N -0.862 5.862 11 Si 0.864 3.136 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.255 1.255 15 C 0.089 3.911 16 C 0.456 3.544 17 O -0.484 6.484 18 O -0.527 6.527 19 C 0.162 3.838 20 C -0.145 4.145 21 C -0.078 4.078 22 C -0.183 4.183 23 C 0.097 3.903 24 N -0.482 5.482 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.275 0.725 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.401 0.599 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 5.768 -14.449 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 H 0.119 0.881 4 C 0.282 3.718 5 O -0.419 6.419 6 N -0.171 5.171 7 C -0.433 4.433 8 H 0.126 0.874 9 C -0.147 4.147 10 N -0.499 5.499 11 Si 0.691 3.309 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.179 1.179 15 C -0.036 4.036 16 C 0.295 3.705 17 O -0.369 6.369 18 O -0.339 6.339 19 C 0.024 3.976 20 C -0.165 4.165 21 C -0.104 4.104 22 C -0.202 4.202 23 C -0.060 4.060 24 N -0.191 5.191 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.259 0.741 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.837 5.505 -13.960 15.489 hybrid contribution -0.346 0.198 -0.115 0.415 sum -4.183 5.702 -14.075 15.752 Atomic orbital electron populations 1.21815 0.92018 1.03402 1.02543 1.20333 0.97361 1.00483 0.91311 0.88109 1.19830 0.81279 0.87920 0.82789 1.90592 1.52688 1.14907 1.83698 1.43346 1.61005 1.03219 1.09557 1.19030 1.21082 1.06595 0.96564 0.87440 1.25405 0.96272 0.98000 0.95059 1.69677 1.33272 1.41923 1.04979 0.87166 0.81197 0.81557 0.80971 1.19665 1.20667 1.17942 1.21750 0.90892 0.87536 1.03460 1.24498 0.90934 0.79761 0.75296 1.90717 1.56077 1.47263 1.42846 1.84583 1.37697 1.31344 1.80270 1.20583 0.90311 0.92845 0.93864 1.21936 1.01914 0.96188 0.96459 1.21532 0.95558 0.98483 0.94813 1.22054 0.97229 0.98977 1.01988 1.22646 0.98763 0.92761 0.91846 1.67407 1.11671 1.31212 1.08823 0.91315 0.91334 0.91773 0.91424 0.87561 0.87161 0.74137 0.84623 0.85050 0.85163 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.60 37.16 0.32 -1.82 16 2 C -0.07 -1.32 2.48 -92.92 -0.23 -1.55 16 3 H 0.10 1.67 5.79 -51.93 -0.30 1.37 16 4 C 0.49 11.71 6.69 -10.99 -0.07 11.64 16 5 O -0.54 -14.74 16.03 5.55 0.09 -14.65 16 6 N -0.45 -11.03 1.71 -116.10 -0.20 -11.22 16 7 C -0.31 -8.78 9.12 -14.94 -0.14 -8.92 16 8 H 0.11 3.50 8.00 -52.48 -0.42 3.08 16 9 C 0.06 1.64 5.41 -17.47 -0.09 1.54 16 10 N -0.86 -25.23 13.96 55.50 0.77 -24.46 16 11 Si 0.86 20.10 24.89 -169.99 -4.23 15.87 16 12 H -0.27 -5.71 6.60 56.52 0.37 -5.34 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 15 C 0.09 1.81 4.82 -5.19 -0.03 1.78 16 16 C 0.46 8.64 7.26 36.01 0.26 8.90 16 17 O -0.48 -10.73 16.07 -18.74 -0.30 -11.03 16 18 O -0.53 -7.53 13.42 -39.26 -0.53 -8.05 16 19 C 0.16 2.88 5.32 -82.59 -0.44 2.44 16 20 C -0.15 -2.26 8.90 -39.44 -0.35 -2.61 16 21 C -0.08 -1.00 10.18 -39.28 -0.40 -1.40 16 22 C -0.18 -2.22 10.11 -39.44 -0.40 -2.61 16 23 C 0.10 1.36 11.18 -17.55 -0.20 1.16 16 24 N -0.48 -8.45 10.27 -9.47 -0.10 -8.55 16 25 H 0.07 1.05 6.50 -51.93 -0.34 0.72 16 26 H 0.07 1.10 5.86 -51.93 -0.30 0.80 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.11 2.24 2.79 -51.93 -0.14 2.10 16 30 H 0.11 1.82 5.64 -51.93 -0.29 1.53 16 31 H 0.40 3.83 9.10 45.56 0.41 4.25 16 32 H 0.14 1.98 6.31 -52.48 -0.33 1.64 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -35.94 297.85 -4.34 -40.28 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -2.57 Total: 8.78 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -1.76 Total: 8.54 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.48 Total: -44.23 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.74 Total: -33.73 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.23 Total: 15.87 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.94 -4.34 -40.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603138216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.176 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds