Wall clock time and date at job start Tue Mar 31 2020 01:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46963 * 2 1 4 4 C 1.50696 * 109.47034 * 240.00405 * 2 1 3 5 5 O 1.21297 * 119.99968 * 252.76299 * 4 2 1 6 6 N 1.34777 * 120.00293 * 72.76332 * 4 2 1 7 7 C 1.37096 * 119.99942 * 5.73826 * 6 4 2 8 8 H 1.08002 * 119.99896 * 346.26521 * 7 6 4 9 9 C 1.38947 * 120.00172 * 166.26269 * 7 6 4 10 10 N 1.31410 * 120.00101 * 359.34861 * 9 7 6 11 11 Si 1.86803 * 120.00174 * 179.34963 * 9 7 6 12 12 H 1.48500 * 109.47056 * 90.00336 * 11 9 7 13 13 H 1.48504 * 109.47074 * 210.00039 * 11 9 7 14 14 H 1.48495 * 109.47113 * 329.99915 * 11 9 7 15 15 C 1.46501 * 119.99981 * 185.74559 * 6 4 2 16 16 C 1.50698 * 109.46882 * 263.32341 * 15 6 4 17 17 O 1.20827 * 120.00418 * 0.02562 * 16 15 6 18 18 O 1.34234 * 120.00195 * 179.97438 * 16 15 6 19 19 C 1.50697 * 109.47184 * 120.00239 * 2 1 3 20 20 C 1.38224 * 119.61781 * 34.72606 * 19 2 1 21 21 C 1.38627 * 119.16310 * 180.30223 * 20 19 2 22 22 C 1.38676 * 118.41795 * 359.97438 * 21 20 19 23 23 C 1.38175 * 119.16542 * 0.02562 * 22 21 20 24 24 N 1.31852 * 119.61678 * 214.99867 * 19 2 1 25 25 H 1.09000 * 109.46515 * 54.01151 * 1 2 3 26 26 H 1.08994 * 109.47029 * 174.01392 * 1 2 3 27 27 H 1.09002 * 109.46613 * 294.01765 * 1 2 3 28 28 H 0.97005 * 120.00716 * 179.97438 * 10 9 7 29 29 H 1.08998 * 109.47281 * 23.32884 * 15 6 4 30 30 H 1.09003 * 109.46993 * 143.32960 * 15 6 4 31 31 H 0.96698 * 117.00544 * 180.02562 * 18 16 15 32 32 H 1.08001 * 120.41967 * 0.25926 * 20 19 2 33 33 H 1.08000 * 120.79044 * 179.97438 * 21 20 19 34 34 H 1.07998 * 120.41732 * 179.97438 * 22 21 20 35 35 H 1.07999 * 119.62104 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.5280 -1.8132 -1.1343 6 7 1.9309 -0.1202 -2.4379 7 6 1.4802 1.1710 -2.5341 8 1 1.0007 1.6400 -1.6877 9 6 1.6403 1.8762 -3.7206 10 7 2.2352 1.3099 -4.7464 11 14 1.0099 3.6293 -3.8575 12 1 2.0783 4.5734 -3.4422 13 1 0.6228 3.9077 -5.2639 14 1 -0.1724 3.8005 -2.9756 15 6 2.3022 -0.8585 -3.6476 16 6 3.7158 -0.5088 -4.0355 17 8 4.3485 0.2761 -3.3696 18 8 4.2725 -1.0702 -5.1203 19 6 2.0324 -0.7104 1.2304 20 6 1.3290 -1.7899 1.7310 21 6 1.7962 -2.4325 2.8670 22 6 2.9590 -1.9636 3.4594 23 6 3.6085 -0.8788 2.9021 24 7 3.1349 -0.2918 1.8201 25 1 -0.3632 0.6039 -0.8315 26 1 -0.3633 -1.0220 -0.1072 27 1 -0.3632 0.4183 0.9387 28 1 2.3467 1.8021 -5.5749 29 1 2.2322 -1.9292 -3.4556 30 1 1.6258 -0.5899 -4.4591 31 1 5.1817 -0.8153 -5.3289 32 1 0.4264 -2.1280 1.2436 33 1 1.2671 -3.2783 3.2807 34 1 3.3516 -2.4397 4.3457 35 1 4.5144 -0.5072 3.3577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603138217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:23 Heat of formation + Delta-G solvation = -73.493879 kcal Electronic energy + Delta-G solvation = -22130.127054 eV Core-core repulsion = 18708.062773 eV Total energy + Delta-G solvation = -3422.064281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13348 -39.13954 -38.02345 -35.20759 -34.37345 -33.70221 -32.12936 -31.54876 -29.52601 -27.62807 -25.10185 -24.29181 -23.01757 -21.97733 -20.41112 -19.19307 -17.36518 -16.79493 -16.53180 -16.25512 -15.70255 -15.37668 -15.01103 -14.47214 -14.26503 -14.18159 -13.59079 -13.41038 -13.36785 -12.71872 -12.65682 -12.05106 -11.90698 -11.65879 -11.44583 -11.26396 -11.09702 -10.85873 -10.76355 -10.46762 -10.38454 -10.15268 -9.58083 -9.50826 -9.04125 -8.99835 -8.76608 -8.42559 -8.03290 -6.46959 -4.04440 1.46064 1.62908 3.08204 3.17018 3.19175 3.62168 3.84497 4.00696 4.14490 4.35614 4.58284 4.87279 5.03503 5.07967 5.12395 5.33809 5.48831 5.68660 5.71082 5.79051 5.97618 6.15869 6.23294 6.30645 6.42018 6.46832 6.56830 6.66743 6.78130 6.89316 7.03763 7.29571 7.55126 7.79261 8.22158 8.41033 8.95057 9.29816 9.38580 9.71640 10.55969 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.006326 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.498115 B = 4425.187786 C = 5178.549633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 H 0.110 0.890 4 C 0.481 3.519 5 O -0.597 6.597 6 N -0.431 5.431 7 C -0.317 4.317 8 H 0.109 0.891 9 C 0.036 3.964 10 N -0.890 5.890 11 Si 0.936 3.064 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.268 1.268 15 C 0.161 3.839 16 C 0.507 3.493 17 O -0.524 6.524 18 O -0.537 6.537 19 C 0.172 3.828 20 C -0.152 4.152 21 C -0.080 4.080 22 C -0.188 4.188 23 C 0.097 3.903 24 N -0.479 5.479 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.273 0.727 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.386 0.614 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 -3.409 7.678 9.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 H 0.128 0.872 4 C 0.269 3.731 5 O -0.483 6.483 6 N -0.149 5.149 7 C -0.444 4.444 8 H 0.126 0.874 9 C -0.166 4.166 10 N -0.532 5.532 11 Si 0.763 3.237 12 H -0.202 1.202 13 H -0.207 1.207 14 H -0.193 1.193 15 C 0.036 3.964 16 C 0.349 3.651 17 O -0.411 6.411 18 O -0.347 6.347 19 C 0.034 3.966 20 C -0.172 4.172 21 C -0.106 4.106 22 C -0.208 4.208 23 C -0.061 4.061 24 N -0.187 5.187 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.242 0.758 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.199 -3.046 7.447 8.659 hybrid contribution 0.197 0.478 -0.065 0.522 sum -3.002 -2.568 7.382 8.372 Atomic orbital electron populations 1.21824 0.92550 1.02616 1.02816 1.19966 0.96741 1.01068 0.89522 0.87208 1.19718 0.82617 0.86833 0.83918 1.90559 1.49386 1.22354 1.85963 1.43367 1.55488 1.12966 1.03092 1.19836 1.36144 0.87971 1.00427 0.87379 1.25223 0.95981 1.00178 0.95215 1.69482 1.42130 1.37589 1.03983 0.85763 0.78847 0.81362 0.77723 1.20237 1.20745 1.19297 1.20626 0.90781 0.94809 0.90225 1.23487 0.88825 0.76802 0.75983 1.90552 1.63556 1.33323 1.53647 1.84523 1.33542 1.68533 1.48094 1.20813 0.89654 0.92245 0.93917 1.21911 1.01927 0.96635 0.96737 1.21486 0.95616 0.98511 0.94991 1.22007 0.97456 0.99281 1.02089 1.22659 0.98754 0.92757 0.91880 1.67471 1.11779 1.30972 1.08513 0.89864 0.92404 0.92432 0.91532 0.90744 0.84850 0.75801 0.84910 0.85328 0.85417 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.15 37.16 0.30 -1.97 16 2 C -0.05 -1.04 2.19 -92.92 -0.20 -1.24 16 3 H 0.11 2.34 7.16 -51.93 -0.37 1.97 16 4 C 0.48 11.72 6.86 -10.99 -0.08 11.65 16 5 O -0.60 -15.96 15.55 5.54 0.09 -15.88 16 6 N -0.43 -10.77 2.18 -116.10 -0.25 -11.02 16 7 C -0.32 -7.79 8.41 -14.94 -0.13 -7.91 16 8 H 0.11 2.44 5.04 -52.49 -0.26 2.18 16 9 C 0.04 0.87 5.26 -17.47 -0.09 0.78 16 10 N -0.89 -22.67 7.74 55.50 0.43 -22.24 16 11 Si 0.94 19.44 29.55 -169.99 -5.02 14.42 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 15 C 0.16 3.92 5.35 -5.19 -0.03 3.90 16 16 C 0.51 12.83 6.01 36.00 0.22 13.05 16 17 O -0.52 -15.09 16.55 -18.75 -0.31 -15.40 16 18 O -0.54 -11.32 13.42 -39.27 -0.53 -11.84 16 19 C 0.17 3.35 5.11 -82.59 -0.42 2.93 16 20 C -0.15 -2.52 9.07 -39.44 -0.36 -2.87 16 21 C -0.08 -1.11 10.18 -39.28 -0.40 -1.51 16 22 C -0.19 -2.53 10.11 -39.44 -0.40 -2.93 16 23 C 0.10 1.53 11.18 -17.55 -0.20 1.33 16 24 N -0.48 -9.50 10.27 -9.48 -0.10 -9.59 16 25 H 0.08 1.38 6.37 -51.93 -0.33 1.05 16 26 H 0.06 0.88 6.83 -51.93 -0.35 0.53 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.07 1.74 7.31 -51.93 -0.38 1.36 16 30 H 0.13 3.23 6.36 -51.93 -0.33 2.90 16 31 H 0.39 6.47 9.10 45.56 0.41 6.88 16 32 H 0.13 1.98 6.45 -52.49 -0.34 1.64 16 33 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 299.70 15.07 4.52 4.52 Total: -1.00 -33.48 299.70 -5.74 -39.22 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -2.78 Total: 12.62 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: -1.78 Total: 15.20 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.08 Total: -42.86 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.75 Total: -43.12 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.48 -5.74 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603138217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.278 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds