Wall clock time and date at job start Tue Mar 31 2020 01:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46963 * 2 1 4 4 C 1.50696 * 109.47034 * 240.00405 * 2 1 3 5 5 O 1.21297 * 119.99968 * 252.76299 * 4 2 1 6 6 N 1.34777 * 120.00293 * 72.76332 * 4 2 1 7 7 C 1.37096 * 119.99942 * 5.73826 * 6 4 2 8 8 H 1.08002 * 119.99896 * 346.26521 * 7 6 4 9 9 C 1.38947 * 120.00172 * 166.26269 * 7 6 4 10 10 N 1.31410 * 120.00101 * 359.34861 * 9 7 6 11 11 Si 1.86803 * 120.00174 * 179.34963 * 9 7 6 12 12 H 1.48500 * 109.47056 * 90.00336 * 11 9 7 13 13 H 1.48504 * 109.47074 * 210.00039 * 11 9 7 14 14 H 1.48495 * 109.47113 * 329.99915 * 11 9 7 15 15 C 1.46501 * 119.99981 * 185.74559 * 6 4 2 16 16 C 1.50698 * 109.46882 * 263.32341 * 15 6 4 17 17 O 1.20827 * 120.00418 * 0.02562 * 16 15 6 18 18 O 1.34234 * 120.00195 * 179.97438 * 16 15 6 19 19 C 1.50697 * 109.47184 * 120.00239 * 2 1 3 20 20 C 1.38224 * 119.61781 * 34.72606 * 19 2 1 21 21 C 1.38627 * 119.16310 * 180.30223 * 20 19 2 22 22 C 1.38676 * 118.41795 * 359.97438 * 21 20 19 23 23 C 1.38175 * 119.16542 * 0.02562 * 22 21 20 24 24 N 1.31852 * 119.61678 * 214.99867 * 19 2 1 25 25 H 1.09000 * 109.46515 * 54.01151 * 1 2 3 26 26 H 1.08994 * 109.47029 * 174.01392 * 1 2 3 27 27 H 1.09002 * 109.46613 * 294.01765 * 1 2 3 28 28 H 0.97005 * 120.00716 * 179.97438 * 10 9 7 29 29 H 1.08998 * 109.47281 * 23.32884 * 15 6 4 30 30 H 1.09003 * 109.46993 * 143.32960 * 15 6 4 31 31 H 0.96698 * 117.00544 * 180.02562 * 18 16 15 32 32 H 1.08001 * 120.41967 * 0.25926 * 20 19 2 33 33 H 1.08000 * 120.79044 * 179.97438 * 21 20 19 34 34 H 1.07998 * 120.41732 * 179.97438 * 22 21 20 35 35 H 1.07999 * 119.62104 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.5280 -1.8132 -1.1343 6 7 1.9309 -0.1202 -2.4379 7 6 1.4802 1.1710 -2.5341 8 1 1.0007 1.6400 -1.6877 9 6 1.6403 1.8762 -3.7206 10 7 2.2352 1.3099 -4.7464 11 14 1.0099 3.6293 -3.8575 12 1 2.0783 4.5734 -3.4422 13 1 0.6228 3.9077 -5.2639 14 1 -0.1724 3.8005 -2.9756 15 6 2.3022 -0.8585 -3.6476 16 6 3.7158 -0.5088 -4.0355 17 8 4.3485 0.2761 -3.3696 18 8 4.2725 -1.0702 -5.1203 19 6 2.0324 -0.7104 1.2304 20 6 1.3290 -1.7899 1.7310 21 6 1.7962 -2.4325 2.8670 22 6 2.9590 -1.9636 3.4594 23 6 3.6085 -0.8788 2.9021 24 7 3.1349 -0.2918 1.8201 25 1 -0.3632 0.6039 -0.8315 26 1 -0.3633 -1.0220 -0.1072 27 1 -0.3632 0.4183 0.9387 28 1 2.3467 1.8021 -5.5749 29 1 2.2322 -1.9292 -3.4556 30 1 1.6258 -0.5899 -4.4591 31 1 5.1817 -0.8153 -5.3289 32 1 0.4264 -2.1280 1.2436 33 1 1.2671 -3.2783 3.2807 34 1 3.3516 -2.4397 4.3457 35 1 4.5144 -0.5072 3.3577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603138217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:22 Heat of formation + Delta-G solvation = -96.647247 kcal Electronic energy + Delta-G solvation = -22131.131060 eV Core-core repulsion = 18708.062773 eV Total energy + Delta-G solvation = -3423.068286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61120 -40.88459 -39.83312 -37.07748 -36.34419 -35.18040 -33.44153 -33.31953 -30.88543 -29.41416 -26.89120 -25.75429 -24.20399 -23.54755 -22.13895 -21.00924 -19.07912 -18.70731 -18.22624 -17.53086 -17.32242 -17.07128 -16.45888 -16.22808 -16.08549 -15.80415 -15.31246 -14.95005 -14.68757 -14.22414 -13.84179 -13.78984 -13.49758 -13.23374 -13.16517 -12.96835 -12.65815 -12.34174 -12.21417 -12.16704 -12.14382 -12.01532 -11.49778 -10.98562 -10.78353 -10.45620 -10.27708 -9.97015 -9.80231 -8.34367 -5.96912 0.25406 0.47509 1.40188 1.47087 1.58745 1.77564 1.94327 2.24698 2.52250 2.80253 3.09422 3.25990 3.40083 3.83377 4.07169 4.16456 4.26537 4.30138 4.37918 4.45991 4.48949 4.78633 4.89660 4.92093 4.96457 4.99544 5.03751 5.19911 5.33091 5.34904 5.48805 5.67950 5.89416 5.98009 6.32950 7.05215 7.17714 7.41657 7.48877 7.83119 8.68391 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.006326 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.498115 B = 4425.187786 C = 5178.549633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.045 4.045 3 H 0.089 0.911 4 C 0.470 3.530 5 O -0.628 6.628 6 N -0.441 5.441 7 C -0.331 4.331 8 H 0.123 0.877 9 C -0.010 4.010 10 N -0.912 5.912 11 Si 0.999 3.001 12 H -0.290 1.290 13 H -0.279 1.279 14 H -0.246 1.246 15 C 0.158 3.842 16 C 0.510 3.490 17 O -0.567 6.567 18 O -0.524 6.524 19 C 0.136 3.864 20 C -0.162 4.162 21 C -0.077 4.077 22 C -0.173 4.173 23 C 0.077 3.923 24 N -0.525 5.525 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.272 0.728 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.408 0.592 32 H 0.144 0.856 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.703 -3.856 9.318 11.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.067 4.067 3 H 0.107 0.893 4 C 0.260 3.740 5 O -0.516 6.516 6 N -0.159 5.159 7 C -0.457 4.457 8 H 0.140 0.860 9 C -0.208 4.208 10 N -0.554 5.554 11 Si 0.823 3.177 12 H -0.216 1.216 13 H -0.204 1.204 14 H -0.170 1.170 15 C 0.033 3.967 16 C 0.354 3.646 17 O -0.457 6.457 18 O -0.335 6.335 19 C -0.002 4.002 20 C -0.182 4.182 21 C -0.102 4.102 22 C -0.193 4.193 23 C -0.080 4.080 24 N -0.235 5.235 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.151 0.849 31 H 0.266 0.734 32 H 0.161 0.839 33 H 0.187 0.813 34 H 0.189 0.811 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.239 -3.509 9.067 10.606 hybrid contribution 0.634 0.513 -0.550 0.983 sum -3.605 -2.997 8.516 9.722 Atomic orbital electron populations 1.21775 0.89641 1.03286 1.03999 1.19909 0.99089 0.99330 0.88412 0.89284 1.20507 0.81949 0.86670 0.84850 1.90506 1.50707 1.23794 1.86588 1.43608 1.55497 1.13313 1.03487 1.20255 1.36289 0.88057 1.01117 0.86000 1.26106 0.96129 1.03709 0.94864 1.69553 1.42915 1.38689 1.04219 0.84813 0.78539 0.76302 0.78045 1.21642 1.20407 1.16972 1.20665 0.90526 0.95069 0.90463 1.23624 0.88930 0.76019 0.76071 1.90526 1.64634 1.35354 1.55206 1.84452 1.35131 1.67631 1.46293 1.20774 0.90899 0.94123 0.94355 1.22104 1.02240 0.96005 0.97819 1.22006 0.95660 0.98889 0.93691 1.22481 0.96505 0.97698 1.02577 1.23208 0.99823 0.93687 0.91238 1.67368 1.12664 1.32956 1.10522 0.90462 0.91557 0.89702 0.91768 0.90344 0.84878 0.73386 0.83855 0.81262 0.81094 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 8.15 71.98 0.59 -3.51 16 2 C -0.05 -1.88 2.19 -12.29 -0.03 -1.91 16 3 H 0.09 3.95 7.16 -2.39 -0.02 3.93 16 4 C 0.47 23.49 6.86 87.66 0.60 24.09 16 5 O -0.63 -34.42 15.55 -3.08 -0.05 -34.47 16 6 N -0.44 -22.56 2.18 -639.60 -1.39 -23.95 16 7 C -0.33 -16.45 8.41 84.04 0.71 -15.74 16 8 H 0.12 5.55 5.04 -2.91 -0.01 5.53 16 9 C -0.01 -0.48 5.26 84.93 0.45 -0.04 16 10 N -0.91 -46.90 7.74 21.66 0.17 -46.74 16 11 Si 1.00 39.66 29.55 68.60 2.03 41.69 16 12 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 14 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 15 C 0.16 7.89 5.35 85.63 0.46 8.35 16 16 C 0.51 26.25 6.01 71.24 0.43 26.68 16 17 O -0.57 -33.46 16.55 21.96 0.36 -33.09 16 18 O -0.52 -21.98 13.42 -51.45 -0.69 -22.67 16 19 C 0.14 5.29 5.11 42.55 0.22 5.51 16 20 C -0.16 -5.10 9.07 22.36 0.20 -4.90 16 21 C -0.08 -1.87 10.18 22.47 0.23 -1.64 16 22 C -0.17 -4.06 10.11 22.36 0.23 -3.83 16 23 C 0.08 2.33 11.18 84.67 0.95 3.27 16 24 N -0.53 -20.95 10.27 -183.89 -1.89 -22.84 16 25 H 0.08 2.51 6.37 -2.39 -0.02 2.49 16 26 H 0.07 1.96 6.83 -2.39 -0.02 1.94 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.27 13.48 8.31 -92.70 -0.77 12.71 16 29 H 0.08 3.76 7.31 -2.39 -0.02 3.75 16 30 H 0.13 6.58 6.36 -2.39 -0.02 6.57 16 31 H 0.41 13.38 9.10 -74.06 -0.67 12.70 16 32 H 0.14 4.03 6.45 -2.91 -0.02 4.01 16 33 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 35 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -74.43 299.70 4.03 -70.40 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: 0.47 Total: 35.35 kcal Atomic # 6 Polarization: 31.31 SS G_CDS: 5.02 Total: 36.33 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -3.12 Total: -93.53 kcal Atomic # 8 Polarization: -89.85 SS G_CDS: -0.38 Total: -90.23 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -74.43 4.03 -70.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603138217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.251 kcal (2) G-P(sol) polarization free energy of solvation -74.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds