Wall clock time and date at job start Tue Mar 31 2020 01:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 239.99748 * 2 1 3 5 5 H 1.07996 * 120.00370 * 239.99848 * 4 2 1 6 6 C 1.37882 * 119.99790 * 60.00230 * 4 2 1 7 7 N 1.31516 * 119.99980 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99622 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47227 * 90.00070 * 8 6 4 10 10 H 1.48508 * 109.46650 * 209.99563 * 8 6 4 11 11 H 1.48499 * 109.47411 * 329.99483 * 8 6 4 12 12 C 1.50696 * 109.46910 * 119.99705 * 2 1 3 13 13 O 1.21284 * 120.00109 * 120.00064 * 12 2 1 14 14 N 1.34777 * 120.00137 * 299.99848 * 12 2 1 15 15 C 1.46506 * 119.99873 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.46950 * 325.00285 * 15 14 12 17 17 C 1.50701 * 109.46970 * 85.00553 * 15 14 12 18 18 O 1.20830 * 119.99880 * 359.97438 * 17 15 14 19 19 O 1.34223 * 120.00190 * 179.97438 * 17 15 14 20 20 C 1.50706 * 109.47053 * 205.00197 * 15 14 12 21 21 C 1.38668 * 120.41443 * 139.72174 * 20 15 14 22 22 C 1.38634 * 118.41843 * 179.78304 * 21 20 15 23 23 C 1.38227 * 119.15680 * 0.51352 * 22 21 20 24 24 N 1.31856 * 120.76672 * 359.72856 * 23 22 21 25 25 C 1.31886 * 121.72190 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47624 * 300.00469 * 1 2 3 28 28 H 1.09002 * 109.47045 * 60.00093 * 1 2 3 29 29 H 0.97002 * 119.99804 * 179.97438 * 7 6 4 30 30 H 0.96995 * 120.00018 * 0.27749 * 14 12 2 31 31 H 0.96695 * 117.00235 * 179.97438 * 19 17 15 32 32 H 1.07992 * 120.79437 * 0.02570 * 21 20 15 33 33 H 1.07991 * 120.42355 * 180.22436 * 22 21 20 34 34 H 1.08002 * 119.61986 * 179.74392 * 23 22 21 35 35 H 1.08004 * 119.61108 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 6 2.0322 -0.7103 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1945 -0.9408 3.6508 16 1 2.2308 -2.0135 3.4613 17 6 3.5761 -0.4435 3.9897 18 8 4.0997 0.4011 3.3023 19 8 4.2251 -0.9387 5.0552 20 6 1.2645 -0.6655 4.8043 21 6 0.9343 -1.6747 5.6961 22 6 0.0788 -1.3746 6.7449 23 6 -0.4215 -0.0911 6.8597 24 7 -0.0896 0.8425 5.9898 25 6 0.7260 0.5943 4.9835 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1612 -3.4844 30 1 1.1457 0.5365 2.5435 31 1 5.1090 -0.5891 5.2324 32 1 1.3371 -2.6698 5.5788 33 1 -0.1970 -2.1350 7.4604 34 1 -1.0918 0.1499 7.6715 35 1 0.9753 1.3849 4.2911 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:55 Heat of formation + Delta-G solvation = -89.756745 kcal Electronic energy + Delta-G solvation = -21453.308776 eV Core-core repulsion = 18030.539284 eV Total energy + Delta-G solvation = -3422.769492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.99509 -39.83676 -38.70133 -36.08815 -35.04831 -33.77309 -32.69520 -31.52797 -30.28576 -27.60709 -25.14023 -23.97629 -23.33885 -22.80514 -20.98851 -19.58994 -18.20734 -17.45544 -16.98114 -16.58858 -16.45697 -16.05693 -15.54455 -15.19300 -14.63042 -14.40965 -14.10298 -13.91267 -13.35779 -13.29513 -12.98423 -12.68548 -12.45436 -12.05007 -11.55204 -11.46408 -11.03020 -10.82604 -10.76114 -10.66941 -10.28585 -10.04785 -9.96844 -9.70490 -9.34958 -8.99472 -8.88512 -8.71696 -8.35261 -6.02794 -4.06102 0.75650 1.01666 2.24061 2.78066 3.34670 3.40087 3.42573 3.49039 3.65331 3.87364 4.09494 4.40488 4.47671 4.58822 4.68205 4.79198 5.14129 5.23761 5.28428 5.31176 5.48761 5.81682 5.91115 6.11821 6.37668 6.49371 6.59206 6.68030 6.80775 6.90589 7.45191 7.69699 7.73260 7.90078 7.92345 8.07353 8.33837 9.01230 9.06179 9.59041 11.04880 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025160 B = 0.004622 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.627512 B = 6056.382222 C = 6628.066219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.032 3.968 3 H 0.057 0.943 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.530 3.470 13 O -0.539 6.539 14 N -0.725 5.725 15 C 0.206 3.794 16 H 0.132 0.868 17 C 0.466 3.534 18 O -0.490 6.490 19 O -0.517 6.517 20 C -0.143 4.143 21 C -0.047 4.047 22 C -0.171 4.171 23 C 0.102 3.898 24 N -0.479 5.479 25 C 0.114 3.886 26 H 0.032 0.968 27 H 0.012 0.988 28 H 0.095 0.905 29 H 0.261 0.739 30 H 0.403 0.597 31 H 0.407 0.593 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 -2.614 19.647 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.075 0.925 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.321 3.679 13 O -0.413 6.413 14 N -0.381 5.381 15 C 0.096 3.904 16 H 0.150 0.850 17 C 0.305 3.695 18 O -0.375 6.375 19 O -0.329 6.329 20 C -0.145 4.145 21 C -0.073 4.073 22 C -0.191 4.191 23 C -0.055 4.055 24 N -0.187 5.187 25 C -0.043 4.043 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.240 0.760 31 H 0.266 0.734 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.175 0.825 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.026 -2.289 19.192 19.434 hybrid contribution 1.056 -0.642 -0.718 1.429 sum -0.970 -2.931 18.473 18.730 Atomic orbital electron populations 1.21764 0.96316 0.99922 1.01128 1.18894 0.94226 0.97073 0.88663 0.92496 1.21113 1.31128 1.12853 0.88893 0.90769 1.24944 0.95095 0.95049 0.99108 1.69869 1.37019 1.23004 1.23591 0.86435 0.79433 0.79223 0.82022 1.20664 1.21272 1.19757 1.22192 0.77757 0.83948 0.84018 1.90538 1.37486 1.26887 1.86406 1.46286 1.54604 1.33279 1.03917 1.18879 0.85630 1.00703 0.85140 0.85034 1.24026 0.88750 0.79398 0.77340 1.90764 1.67421 1.30245 1.49072 1.84506 1.35126 1.66225 1.47037 1.20542 1.00401 0.96100 0.97479 1.21483 0.94257 0.99201 0.92353 1.22154 0.99021 0.98608 0.99302 1.22888 0.96750 0.89180 0.96708 1.67768 1.12334 1.35541 1.03088 1.22641 0.92045 0.95011 0.94647 0.94879 0.96864 0.88648 0.92916 0.76049 0.73403 0.84033 0.84283 0.82484 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.87 37.16 0.33 -2.70 16 2 C 0.03 0.81 2.64 -92.93 -0.25 0.57 16 3 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 4 C -0.50 -14.27 8.37 -34.44 -0.29 -14.56 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.53 12.03 6.98 -10.99 -0.08 11.96 16 13 O -0.54 -13.79 15.12 5.55 0.08 -13.71 16 14 N -0.72 -12.61 4.46 -56.06 -0.25 -12.86 16 15 C 0.21 3.01 2.70 -70.23 -0.19 2.82 16 16 H 0.13 1.94 7.47 -51.93 -0.39 1.55 16 17 C 0.47 7.17 7.64 36.01 0.28 7.44 16 18 O -0.49 -9.39 17.08 -18.75 -0.32 -9.71 16 19 O -0.52 -5.92 13.34 -39.24 -0.52 -6.44 16 20 C -0.14 -1.69 4.89 -104.48 -0.51 -2.20 16 21 C -0.05 -0.45 9.82 -39.28 -0.39 -0.83 16 22 C -0.17 -1.38 10.11 -39.44 -0.40 -1.78 16 23 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 24 N -0.48 -5.74 10.36 -13.25 -0.14 -5.88 16 25 C 0.11 1.39 10.22 -17.55 -0.18 1.21 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.40 6.20 6.31 -40.82 -0.26 5.94 16 31 H 0.41 3.00 9.10 45.56 0.41 3.42 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.16 1.82 6.93 -52.48 -0.36 1.46 16 LS Contribution 310.22 15.07 4.67 4.67 Total: -1.00 -35.02 310.22 -5.73 -40.75 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -2.91 Total: 6.64 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.96 Total: 4.21 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.24 Total: -43.31 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.76 Total: -29.86 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.02 -5.73 -40.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.007 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds