Wall clock time and date at job start Tue Mar 31 2020 01:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46693 * 2 1 4 4 C 1.50695 * 109.46918 * 239.99618 * 2 1 3 5 5 H 1.08001 * 120.00119 * 275.10235 * 4 2 1 6 6 C 1.37877 * 120.00250 * 95.10692 * 4 2 1 7 7 N 1.31507 * 120.00706 * 184.90733 * 6 4 2 8 8 Si 1.86807 * 119.99617 * 4.90415 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.82552 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82178 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.82491 * 8 6 4 12 12 C 1.50699 * 109.47040 * 119.99474 * 2 1 3 13 13 O 1.21283 * 120.00049 * 119.99996 * 12 2 1 14 14 N 1.34779 * 120.00366 * 300.00135 * 12 2 1 15 15 C 1.46497 * 119.99999 * 180.02562 * 14 12 2 16 16 H 1.08997 * 109.47350 * 34.99906 * 15 14 12 17 17 C 1.50701 * 109.47188 * 274.99776 * 15 14 12 18 18 O 1.20826 * 119.99995 * 0.02562 * 17 15 14 19 19 O 1.34225 * 119.99952 * 180.02562 * 17 15 14 20 20 C 1.50702 * 109.46924 * 154.99823 * 15 14 12 21 21 C 1.38669 * 120.42076 * 219.99485 * 20 15 14 22 22 C 1.38630 * 118.42033 * 180.02562 * 21 20 15 23 23 C 1.38219 * 119.16321 * 0.02562 * 22 21 20 24 24 N 1.31857 * 120.76456 * 359.97438 * 23 22 21 25 25 C 1.31887 * 121.72525 * 359.69857 * 24 23 22 26 26 H 1.08997 * 109.46947 * 55.07979 * 1 2 3 27 27 H 1.08995 * 109.46913 * 295.07456 * 1 2 3 28 28 H 1.08998 * 109.46708 * 175.07670 * 1 2 3 29 29 H 0.96994 * 120.00587 * 179.97438 * 7 6 4 30 30 H 0.96999 * 119.99239 * 359.97438 * 14 12 2 31 31 H 0.96707 * 116.99907 * 180.02562 * 19 17 15 32 32 H 1.08001 * 120.78634 * 359.97438 * 21 20 15 33 33 H 1.07997 * 120.41645 * 180.02562 * 22 21 20 34 34 H 1.08002 * 119.61942 * 179.97438 * 23 22 21 35 35 H 1.08000 * 119.62238 * 180.31399 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1339 -1.7857 -1.2295 6 6 2.3623 0.0121 -2.3573 7 7 2.7081 -0.6129 -3.4615 8 14 2.3181 1.8792 -2.3158 9 1 3.6038 2.3929 -1.7788 10 1 2.1126 2.4002 -3.6911 11 1 1.2029 2.3287 -1.4443 12 6 2.0324 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1194 14 7 1.7068 -0.2498 2.4546 15 6 2.1956 -0.9400 3.6508 16 1 3.1949 -1.3318 3.4614 17 6 1.2662 -2.0769 3.9898 18 8 0.2955 -2.2891 3.3025 19 8 1.5169 -2.8537 5.0553 20 6 2.2461 0.0286 4.8042 21 6 3.3047 -0.0002 5.6994 22 6 3.3090 0.9093 6.7457 23 6 2.2651 1.8079 6.8612 24 7 1.2745 1.8065 5.9910 25 6 1.2407 0.9601 4.9801 26 1 -0.3633 0.5883 -0.8426 27 1 -0.3633 0.4355 0.9308 28 1 -0.3633 -1.0239 -0.0882 29 1 2.9399 -0.1046 -4.2544 30 1 1.1494 0.5391 2.5435 31 1 0.8927 -3.5707 5.2325 32 1 4.1064 -0.7148 5.5848 33 1 4.1178 0.9157 7.4613 34 1 2.2608 2.5194 7.6737 35 1 0.4152 0.9922 4.2844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:57 Heat of formation + Delta-G solvation = -87.414196 kcal Electronic energy + Delta-G solvation = -21535.070505 eV Core-core repulsion = 18112.402594 eV Total energy + Delta-G solvation = -3422.667911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.04954 -39.88274 -38.79045 -36.12331 -35.10421 -33.70604 -32.74549 -31.71272 -30.88948 -27.74621 -25.24584 -24.03783 -23.38055 -22.83531 -20.96432 -19.56566 -18.24498 -17.49220 -17.11559 -17.01636 -16.49515 -16.42428 -15.55404 -15.30882 -14.66615 -14.27011 -14.13238 -13.97428 -13.41592 -13.31991 -13.27580 -12.63715 -12.43311 -12.23631 -12.09494 -11.50702 -11.42863 -11.10497 -10.85412 -10.74818 -10.30924 -10.09433 -9.83009 -9.75916 -9.40001 -9.19878 -8.94547 -8.81825 -8.56809 -6.07653 -4.07336 0.70242 0.96678 2.20153 2.72219 3.23126 3.30507 3.33071 3.38345 3.57360 3.78435 4.03722 4.34490 4.37321 4.54439 4.62848 4.74526 5.09117 5.17188 5.21683 5.26870 5.43328 5.76698 5.84220 5.92478 6.16646 6.32087 6.39991 6.45967 6.53365 6.59436 6.83124 7.20871 7.50773 7.64220 7.87823 7.92649 8.50651 8.96242 9.07988 9.51163 11.05497 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.005219 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.578888 B = 5363.784003 C = 6023.053152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.000 4.000 3 H 0.057 0.943 4 C -0.496 4.496 5 H 0.086 0.914 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.870 3.130 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.528 3.472 13 O -0.522 6.522 14 N -0.727 5.727 15 C 0.205 3.795 16 H 0.134 0.866 17 C 0.467 3.533 18 O -0.490 6.490 19 O -0.517 6.517 20 C -0.143 4.143 21 C -0.046 4.046 22 C -0.170 4.170 23 C 0.102 3.898 24 N -0.480 5.480 25 C 0.112 3.888 26 H 0.055 0.945 27 H 0.026 0.974 28 H 0.054 0.946 29 H 0.265 0.735 30 H 0.401 0.599 31 H 0.408 0.592 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.158 0.842 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 3.972 22.102 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.022 4.022 3 H 0.074 0.926 4 C -0.534 4.534 5 H 0.104 0.896 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.697 3.303 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.188 1.188 12 C 0.318 3.682 13 O -0.394 6.394 14 N -0.384 5.384 15 C 0.096 3.904 16 H 0.151 0.849 17 C 0.305 3.695 18 O -0.375 6.375 19 O -0.329 6.329 20 C -0.146 4.146 21 C -0.072 4.072 22 C -0.190 4.190 23 C -0.055 4.055 24 N -0.188 5.188 25 C -0.045 4.045 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.237 0.763 31 H 0.267 0.733 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.175 0.825 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.762 4.117 21.577 21.979 hybrid contribution 0.048 0.187 -0.009 0.193 sum -0.715 4.304 21.568 22.005 Atomic orbital electron populations 1.21939 0.96330 1.01721 0.99085 1.19351 0.94353 0.96901 0.91610 0.92564 1.20727 1.43128 0.96190 0.93313 0.89568 1.25017 0.94575 0.98019 0.95310 1.69874 1.45819 1.35731 1.01664 0.86978 0.79029 0.86682 0.77603 1.20092 1.21178 1.18818 1.22020 0.78272 0.84390 0.83539 1.90590 1.36758 1.25918 1.86164 1.46350 1.56101 1.31934 1.04020 1.18895 0.98375 0.88113 0.85006 0.84874 1.23980 0.85312 0.82794 0.77368 1.90757 1.28413 1.69258 1.49058 1.84508 1.56823 1.44539 1.46989 1.20549 0.97657 0.98866 0.97498 1.21499 0.96601 0.96827 0.92307 1.22163 1.00618 0.96902 0.99320 1.22887 0.89321 0.96575 0.96729 1.67762 1.25537 1.22478 1.03023 1.22625 0.96914 0.90254 0.94694 0.92597 0.95455 0.92644 0.92489 0.76270 0.73344 0.83945 0.84235 0.82462 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.12 37.16 0.34 -2.39 16 2 C 0.00 -0.01 2.30 -92.92 -0.21 -0.22 16 3 H 0.06 1.25 5.29 -51.93 -0.27 0.98 16 4 C -0.50 -14.23 8.36 -34.44 -0.29 -14.51 16 5 H 0.09 2.82 7.61 -52.49 -0.40 2.42 16 6 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -27.45 13.96 55.43 0.77 -26.68 16 8 Si 0.87 20.78 26.99 -169.99 -4.59 16.19 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.26 -5.79 6.82 56.52 0.39 -5.41 16 12 C 0.53 11.58 6.98 -10.99 -0.08 11.50 16 13 O -0.52 -13.34 15.43 5.55 0.09 -13.25 16 14 N -0.73 -11.99 4.42 -56.07 -0.25 -12.24 16 15 C 0.21 2.89 2.70 -70.23 -0.19 2.70 16 16 H 0.13 1.91 7.47 -51.93 -0.39 1.52 16 17 C 0.47 6.91 7.64 36.01 0.28 7.19 16 18 O -0.49 -8.99 17.08 -18.75 -0.32 -9.31 16 19 O -0.52 -5.72 13.34 -39.24 -0.52 -6.25 16 20 C -0.14 -1.62 4.89 -104.48 -0.51 -2.13 16 21 C -0.05 -0.42 9.82 -39.28 -0.39 -0.81 16 22 C -0.17 -1.31 10.11 -39.44 -0.40 -1.71 16 23 C 0.10 0.89 11.18 -17.55 -0.20 0.70 16 24 N -0.48 -5.48 10.36 -13.25 -0.14 -5.62 16 25 C 0.11 1.29 10.23 -17.55 -0.18 1.11 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.03 0.45 7.43 -51.93 -0.39 0.07 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.40 5.62 6.24 -40.82 -0.25 5.37 16 31 H 0.41 2.87 9.10 45.56 0.41 3.28 16 32 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.16 1.67 6.91 -52.49 -0.36 1.30 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -36.83 310.24 -5.12 -41.95 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -2.92 Total: 7.11 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.92 Total: 3.42 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.39 Total: -44.54 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.76 Total: -28.81 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.59 Total: 16.19 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.83 -5.12 -41.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.463 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds