Wall clock time and date at job start Tue Mar 31 2020 01:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46693 * 2 1 4 4 C 1.50695 * 109.46918 * 239.99618 * 2 1 3 5 5 H 1.08001 * 120.00119 * 275.10235 * 4 2 1 6 6 C 1.37877 * 120.00250 * 95.10692 * 4 2 1 7 7 N 1.31507 * 120.00706 * 184.90733 * 6 4 2 8 8 Si 1.86807 * 119.99617 * 4.90415 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.82552 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82178 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.82491 * 8 6 4 12 12 C 1.50699 * 109.47040 * 119.99474 * 2 1 3 13 13 O 1.21283 * 120.00049 * 119.99996 * 12 2 1 14 14 N 1.34779 * 120.00366 * 300.00135 * 12 2 1 15 15 C 1.46497 * 119.99999 * 180.02562 * 14 12 2 16 16 H 1.08997 * 109.47350 * 34.99906 * 15 14 12 17 17 C 1.50701 * 109.47188 * 274.99776 * 15 14 12 18 18 O 1.20826 * 119.99995 * 0.02562 * 17 15 14 19 19 O 1.34225 * 119.99952 * 180.02562 * 17 15 14 20 20 C 1.50702 * 109.46924 * 154.99823 * 15 14 12 21 21 C 1.38669 * 120.42076 * 219.99485 * 20 15 14 22 22 C 1.38630 * 118.42033 * 180.02562 * 21 20 15 23 23 C 1.38219 * 119.16321 * 0.02562 * 22 21 20 24 24 N 1.31857 * 120.76456 * 359.97438 * 23 22 21 25 25 C 1.31887 * 121.72525 * 359.69857 * 24 23 22 26 26 H 1.08997 * 109.46947 * 55.07979 * 1 2 3 27 27 H 1.08995 * 109.46913 * 295.07456 * 1 2 3 28 28 H 1.08998 * 109.46708 * 175.07670 * 1 2 3 29 29 H 0.96994 * 120.00587 * 179.97438 * 7 6 4 30 30 H 0.96999 * 119.99239 * 359.97438 * 14 12 2 31 31 H 0.96707 * 116.99907 * 180.02562 * 19 17 15 32 32 H 1.08001 * 120.78634 * 359.97438 * 21 20 15 33 33 H 1.07997 * 120.41645 * 180.02562 * 22 21 20 34 34 H 1.08002 * 119.61942 * 179.97438 * 23 22 21 35 35 H 1.08000 * 119.62238 * 180.31399 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1339 -1.7857 -1.2295 6 6 2.3623 0.0121 -2.3573 7 7 2.7081 -0.6129 -3.4615 8 14 2.3181 1.8792 -2.3158 9 1 3.6038 2.3929 -1.7788 10 1 2.1126 2.4002 -3.6911 11 1 1.2029 2.3287 -1.4443 12 6 2.0324 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1194 14 7 1.7068 -0.2498 2.4546 15 6 2.1956 -0.9400 3.6508 16 1 3.1949 -1.3318 3.4614 17 6 1.2662 -2.0769 3.9898 18 8 0.2955 -2.2891 3.3025 19 8 1.5169 -2.8537 5.0553 20 6 2.2461 0.0286 4.8042 21 6 3.3047 -0.0002 5.6994 22 6 3.3090 0.9093 6.7457 23 6 2.2651 1.8079 6.8612 24 7 1.2745 1.8065 5.9910 25 6 1.2407 0.9601 4.9801 26 1 -0.3633 0.5883 -0.8426 27 1 -0.3633 0.4355 0.9308 28 1 -0.3633 -1.0239 -0.0882 29 1 2.9399 -0.1046 -4.2544 30 1 1.1494 0.5391 2.5435 31 1 0.8927 -3.5707 5.2325 32 1 4.1064 -0.7148 5.5848 33 1 4.1178 0.9157 7.4613 34 1 2.2608 2.5194 7.6737 35 1 0.4152 0.9922 4.2844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:57 Heat of formation + Delta-G solvation = -116.897950 kcal Electronic energy + Delta-G solvation = -21536.349016 eV Core-core repulsion = 18112.402594 eV Total energy + Delta-G solvation = -3423.946423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.11735 -40.80517 -40.37460 -37.26096 -36.38181 -35.68653 -33.83643 -33.21957 -32.14757 -28.86825 -27.24463 -24.99675 -24.39283 -24.16376 -22.16910 -21.15758 -19.36069 -19.12268 -18.55617 -18.15622 -17.63599 -17.47120 -16.83957 -16.61577 -16.10960 -15.75267 -15.40685 -15.05539 -14.85593 -14.46504 -14.31187 -14.02855 -14.01541 -13.75559 -13.14821 -12.97418 -12.86704 -12.63336 -12.58972 -12.19235 -12.06779 -11.76224 -11.28686 -10.89324 -10.76783 -10.62146 -10.49441 -10.39593 -10.07268 -8.27521 -6.34946 -0.03986 0.26827 1.04306 1.36939 1.39463 1.46927 1.50678 1.94036 2.33440 2.35817 2.85599 3.08293 3.15690 3.57455 3.73453 3.93359 4.05098 4.11429 4.20668 4.34764 4.37535 4.54356 4.70133 4.74041 4.80760 5.08447 5.10618 5.16086 5.23488 5.46174 5.47513 5.55569 5.67445 6.20806 6.49263 6.76546 6.85011 6.92915 7.24286 7.34209 8.90389 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.005219 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.578888 B = 5363.784003 C = 6023.053152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.006 4.006 3 H 0.078 0.922 4 C -0.508 4.508 5 H 0.021 0.979 6 C 0.009 3.991 7 N -0.950 5.950 8 Si 0.945 3.055 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.224 1.224 12 C 0.530 3.470 13 O -0.571 6.571 14 N -0.708 5.708 15 C 0.205 3.795 16 H 0.130 0.870 17 C 0.472 3.528 18 O -0.533 6.533 19 O -0.502 6.502 20 C -0.153 4.153 21 C -0.049 4.049 22 C -0.158 4.158 23 C 0.099 3.901 24 N -0.504 5.504 25 C 0.100 3.900 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.268 0.732 30 H 0.416 0.584 31 H 0.428 0.572 32 H 0.160 0.840 33 H 0.176 0.824 34 H 0.188 0.812 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 6.838 25.331 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.027 4.027 3 H 0.096 0.904 4 C -0.546 4.546 5 H 0.040 0.960 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.766 3.234 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.146 1.146 12 C 0.319 3.681 13 O -0.448 6.448 14 N -0.364 5.364 15 C 0.097 3.903 16 H 0.147 0.853 17 C 0.312 3.688 18 O -0.422 6.422 19 O -0.314 6.314 20 C -0.156 4.156 21 C -0.075 4.075 22 C -0.177 4.177 23 C -0.058 4.058 24 N -0.212 5.212 25 C -0.057 4.057 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.254 0.746 31 H 0.289 0.711 32 H 0.178 0.822 33 H 0.194 0.806 34 H 0.205 0.795 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.777 6.991 24.896 25.871 hybrid contribution 0.087 -0.832 -0.840 1.185 sum -0.690 6.159 24.057 24.842 Atomic orbital electron populations 1.21823 0.94007 1.00939 1.01660 1.19326 0.96052 0.97240 0.90132 0.90412 1.20822 1.43772 0.93731 0.96298 0.96016 1.26066 0.93774 1.04676 0.94292 1.70064 1.47632 1.38479 1.02787 0.85788 0.80721 0.78371 0.78475 1.19047 1.21050 1.14627 1.21626 0.77815 0.83673 0.84955 1.90571 1.39144 1.27982 1.87103 1.45905 1.55141 1.31946 1.03411 1.18988 0.97693 0.88733 0.84877 0.85252 1.24038 0.84542 0.82863 0.77338 1.90748 1.30315 1.70501 1.50642 1.84447 1.57122 1.44712 1.45166 1.20307 0.99123 0.98872 0.97302 1.21807 0.96197 0.97440 0.92087 1.22539 1.00973 0.95272 0.98936 1.23499 0.88690 0.96971 0.96606 1.67789 1.26951 1.22887 1.03621 1.22627 0.97102 0.90693 0.95239 0.92019 0.91070 0.94915 0.92317 0.74569 0.71055 0.82235 0.80646 0.79507 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.12 71.98 0.66 -4.38 16 2 C -0.01 -0.27 2.30 -12.29 -0.03 -0.30 16 3 H 0.08 3.26 5.29 -2.39 -0.01 3.24 16 4 C -0.51 -30.44 8.36 25.60 0.21 -30.23 16 5 H 0.02 1.53 7.61 -2.91 -0.02 1.51 16 6 C 0.01 0.51 5.47 84.66 0.46 0.98 16 7 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 8 Si 0.94 42.22 26.99 68.60 1.85 44.07 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.22 -8.53 6.82 99.48 0.68 -7.85 16 12 C 0.53 23.48 6.98 87.66 0.61 24.09 16 13 O -0.57 -30.50 15.43 -3.04 -0.05 -30.55 16 14 N -0.71 -22.72 4.42 -449.69 -1.99 -24.71 16 15 C 0.21 5.60 2.70 43.50 0.12 5.71 16 16 H 0.13 3.66 7.47 -2.39 -0.02 3.65 16 17 C 0.47 13.66 7.64 71.24 0.54 14.21 16 18 O -0.53 -19.65 17.08 21.96 0.38 -19.28 16 19 O -0.50 -10.29 13.34 -51.36 -0.69 -10.98 16 20 C -0.15 -3.15 4.89 -19.77 -0.10 -3.25 16 21 C -0.05 -0.75 9.82 22.47 0.22 -0.53 16 22 C -0.16 -1.75 10.11 22.36 0.23 -1.53 16 23 C 0.10 1.36 11.18 84.68 0.95 2.30 16 24 N -0.50 -10.17 10.36 -195.84 -2.03 -12.20 16 25 C 0.10 2.10 10.23 84.67 0.87 2.97 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.07 2.19 7.43 -2.39 -0.02 2.18 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 30 H 0.42 10.82 6.24 -92.71 -0.58 10.24 16 31 H 0.43 5.27 9.10 -74.05 -0.67 4.60 16 32 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 34 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.15 3.06 6.91 -2.91 -0.02 3.04 16 Total: -1.00 -86.03 310.24 2.39 -83.65 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -0.13 Total: 20.57 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 4.74 Total: 10.04 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -3.72 Total: -97.53 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -0.36 Total: -60.81 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.85 Total: 44.07 kcal Total: -86.03 2.39 -83.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.253 kcal (2) G-P(sol) polarization free energy of solvation -86.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds