Wall clock time and date at job start Tue Mar 31 2020 01:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47469 * 2 1 4 4 C 1.50703 * 109.46878 * 119.99840 * 2 1 3 5 5 H 1.08001 * 119.99613 * 119.99687 * 4 2 1 6 6 C 1.37874 * 120.00265 * 299.99807 * 4 2 1 7 7 N 1.31509 * 120.00165 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00048 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46778 * 89.99872 * 8 6 4 10 10 H 1.48496 * 109.46920 * 210.00206 * 8 6 4 11 11 H 1.48501 * 109.46865 * 330.00306 * 8 6 4 12 12 C 1.50703 * 109.47014 * 239.99902 * 2 1 3 13 13 O 1.21276 * 119.99715 * 239.99831 * 12 2 1 14 14 N 1.34773 * 119.99837 * 60.00494 * 12 2 1 15 15 C 1.46496 * 119.99697 * 180.02562 * 14 12 2 16 16 H 1.09000 * 109.47574 * 325.00033 * 15 14 12 17 17 C 1.50699 * 109.47248 * 84.99833 * 15 14 12 18 18 O 1.20827 * 120.00172 * 359.97438 * 17 15 14 19 19 O 1.34233 * 120.00015 * 179.97438 * 17 15 14 20 20 C 1.50706 * 109.47106 * 204.99526 * 15 14 12 21 21 C 1.38670 * 120.41781 * 139.71875 * 20 15 14 22 22 C 1.38623 * 118.41898 * 179.78596 * 21 20 15 23 23 C 1.38225 * 119.16212 * 0.51191 * 22 21 20 24 24 N 1.31854 * 120.76276 * 359.73329 * 23 22 21 25 25 C 1.31883 * 121.72453 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47041 * 300.00177 * 1 2 3 27 27 H 1.08999 * 109.47001 * 59.99391 * 1 2 3 28 28 H 1.08994 * 109.47245 * 180.02562 * 1 2 3 29 29 H 0.96998 * 120.00316 * 179.97438 * 7 6 4 30 30 H 0.97006 * 120.00168 * 359.97438 * 14 12 2 31 31 H 0.96700 * 116.99741 * 179.97438 * 19 17 15 32 32 H 1.08005 * 120.79238 * 0.02562 * 21 20 15 33 33 H 1.08007 * 120.42014 * 180.22338 * 22 21 20 34 34 H 1.08007 * 119.61847 * 179.74591 * 23 22 21 35 35 H 1.08004 * 119.61324 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8296 2.6035 8 14 2.3213 -1.1204 4.0080 9 1 3.6296 -0.5460 4.4124 10 1 1.3430 -0.9492 5.1120 11 1 2.4857 -2.5663 3.7120 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2499 -2.4545 15 6 2.1946 -0.9409 -3.6506 16 1 3.1937 -1.3336 -3.4614 17 6 1.2642 -2.0770 -3.9891 18 8 0.2935 -2.2883 -3.3014 19 8 1.5140 -2.8544 -5.0545 20 6 2.2456 0.0273 -4.8044 21 6 3.3069 0.0012 -5.6966 22 6 3.3095 0.9075 -6.7454 23 6 2.2670 1.8078 -6.8603 24 7 1.2764 1.8072 -5.9900 25 6 1.2381 0.9558 -4.9835 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.7082 1.1609 3.4844 30 1 1.1489 0.5386 -2.5435 31 1 0.8890 -3.5709 -5.2313 32 1 4.1104 -0.7109 -5.5792 33 1 4.1183 0.9133 -7.4613 34 1 2.2636 2.5200 -7.6723 35 1 0.4099 0.9852 -4.2909 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059125.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:00 Heat of formation + Delta-G solvation = -115.727372 kcal Electronic energy + Delta-G solvation = -21478.212383 eV Core-core repulsion = 18054.316721 eV Total energy + Delta-G solvation = -3423.895663 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.10577 -40.80572 -40.33310 -37.25471 -36.37846 -35.80226 -33.70190 -32.82856 -31.88607 -28.79920 -27.21181 -24.99194 -24.42260 -24.18790 -22.23356 -21.21056 -19.32796 -18.63563 -18.31910 -18.14888 -17.62175 -17.43054 -16.87410 -16.57013 -16.28712 -15.68744 -15.39177 -15.00123 -14.79748 -14.52011 -14.28203 -14.01905 -13.74502 -13.50310 -13.00243 -12.87921 -12.69743 -12.64230 -12.59717 -12.24058 -12.06576 -12.02943 -11.06857 -10.88799 -10.68703 -10.49937 -10.45708 -10.34743 -10.06974 -8.15450 -6.26132 -0.03896 0.26969 1.04772 1.40788 1.41984 1.49337 1.54611 1.97373 2.33300 2.47465 2.86378 3.13961 3.16568 3.57260 3.73046 3.93565 4.05892 4.18259 4.21797 4.40256 4.55749 4.71451 4.74298 4.91789 4.99022 5.09960 5.16047 5.25071 5.46021 5.48387 5.67681 5.72693 5.88557 6.15697 6.51762 6.81714 6.85674 6.93163 7.29702 7.43373 8.90650 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025470 B = 0.004545 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.069696 B = 6158.505968 C = 6545.669397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.027 3.973 3 H 0.049 0.951 4 C -0.529 4.529 5 H 0.050 0.950 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.957 3.043 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.533 3.467 13 O -0.575 6.575 14 N -0.709 5.709 15 C 0.206 3.794 16 H 0.133 0.867 17 C 0.471 3.529 18 O -0.534 6.534 19 O -0.501 6.501 20 C -0.153 4.153 21 C -0.048 4.048 22 C -0.157 4.157 23 C 0.098 3.902 24 N -0.505 5.505 25 C 0.098 3.902 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.017 0.983 29 H 0.265 0.735 30 H 0.413 0.587 31 H 0.427 0.573 32 H 0.163 0.837 33 H 0.178 0.822 34 H 0.189 0.811 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 0.963 -21.660 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.005 3.995 3 H 0.066 0.934 4 C -0.568 4.568 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.205 1.205 12 C 0.324 3.676 13 O -0.453 6.453 14 N -0.364 5.364 15 C 0.098 3.902 16 H 0.150 0.850 17 C 0.312 3.688 18 O -0.423 6.423 19 O -0.313 6.313 20 C -0.156 4.156 21 C -0.074 4.074 22 C -0.176 4.176 23 C -0.058 4.058 24 N -0.214 5.214 25 C -0.058 4.058 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.251 0.749 31 H 0.289 0.711 32 H 0.180 0.820 33 H 0.196 0.804 34 H 0.205 0.795 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.355 1.231 -21.267 21.565 hybrid contribution -0.035 -1.312 1.153 1.747 sum 3.320 -0.081 -20.114 20.386 Atomic orbital electron populations 1.21536 0.95260 0.99167 1.01571 1.18819 0.95094 0.96290 0.89250 0.93366 1.21257 1.31769 1.12797 0.90941 0.93134 1.25606 0.95131 0.95749 1.01467 1.69945 1.37022 1.23616 1.24377 0.85567 0.78452 0.78706 0.78989 1.19692 1.20058 1.20466 1.21640 0.77445 0.83437 0.85116 1.90507 1.39581 1.27982 1.87199 1.45906 1.55025 1.31838 1.03598 1.19005 0.97729 0.88680 0.84812 0.84967 1.24056 0.84559 0.82839 0.77347 1.90759 1.30344 1.70485 1.50709 1.84447 1.57061 1.44710 1.45120 1.20313 0.99034 0.98854 0.97372 1.21816 0.96142 0.97464 0.92001 1.22555 1.00920 0.95229 0.98913 1.23520 0.88739 0.97051 0.96539 1.67776 1.27094 1.22792 1.03714 1.22578 0.97199 0.90819 0.95238 0.90783 0.93431 0.96396 0.92548 0.74902 0.71076 0.81962 0.80430 0.79452 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.87 71.98 0.64 -5.01 16 2 C 0.03 1.36 2.64 -12.28 -0.03 1.33 16 3 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 4 C -0.53 -30.99 8.37 25.60 0.21 -30.77 16 5 H 0.05 3.14 6.75 -2.91 -0.02 3.12 16 6 C 0.02 1.12 5.30 84.65 0.45 1.56 16 7 N -0.91 -51.61 11.32 21.45 0.24 -51.37 16 8 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 12 C 0.53 24.75 6.98 87.66 0.61 25.36 16 13 O -0.57 -30.24 15.12 -3.02 -0.05 -30.29 16 14 N -0.71 -24.80 4.45 -449.70 -2.00 -26.80 16 15 C 0.21 5.92 2.70 43.50 0.12 6.03 16 16 H 0.13 3.81 7.47 -2.39 -0.02 3.80 16 17 C 0.47 14.25 7.64 71.24 0.54 14.80 16 18 O -0.53 -20.66 17.08 21.96 0.38 -20.29 16 19 O -0.50 -10.60 13.34 -51.45 -0.69 -11.28 16 20 C -0.15 -3.40 4.89 -19.77 -0.10 -3.50 16 21 C -0.05 -0.77 9.82 22.47 0.22 -0.55 16 22 C -0.16 -1.88 10.11 22.36 0.23 -1.66 16 23 C 0.10 1.48 11.18 84.69 0.95 2.43 16 24 N -0.51 -11.25 10.36 -195.84 -2.03 -13.28 16 25 C 0.10 2.31 10.22 84.67 0.87 3.18 16 26 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 27 H 0.05 1.89 7.56 -2.39 -0.02 1.87 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.41 12.73 6.32 -92.70 -0.59 12.14 16 31 H 0.43 5.52 9.10 -74.06 -0.67 4.84 16 32 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 34 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.15 3.51 6.93 -2.91 -0.02 3.49 16 Total: -1.00 -77.36 310.23 2.48 -74.88 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.11 Total: 17.89 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 4.71 Total: 13.20 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -3.79 Total: -91.46 kcal Atomic # 8 Polarization: -61.50 SS G_CDS: -0.36 Total: -61.86 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -77.36 2.48 -74.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059125.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.850 kcal (2) G-P(sol) polarization free energy of solvation -77.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds