Wall clock time and date at job start Tue Mar 31 2020 01:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 13 13 O 1.21282 * 120.00041 * 239.99948 * 12 2 1 14 14 N 1.34779 * 120.00037 * 60.00381 * 12 2 1 15 15 C 1.46500 * 120.00169 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.46886 * 34.99624 * 15 14 12 17 17 C 1.50697 * 109.46979 * 275.00126 * 15 14 12 18 18 O 1.20821 * 120.00280 * 359.97438 * 17 15 14 19 19 O 1.34237 * 119.99899 * 180.02562 * 17 15 14 20 20 C 1.50698 * 109.47308 * 154.99673 * 15 14 12 21 21 C 1.38671 * 120.41804 * 220.00124 * 20 15 14 22 22 C 1.38631 * 118.42007 * 180.02562 * 21 20 15 23 23 C 1.38226 * 119.16164 * 359.97438 * 22 21 20 24 24 N 1.31864 * 120.76285 * 359.97438 * 23 22 21 25 25 C 1.31884 * 121.72381 * 359.70509 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 0.96996 * 119.99844 * 359.97438 * 14 12 2 31 31 H 0.96696 * 117.00194 * 179.97438 * 19 17 15 32 32 H 1.08000 * 120.79305 * 359.97438 * 21 20 15 33 33 H 1.07995 * 120.42395 * 180.02562 * 22 21 20 34 34 H 1.08001 * 119.62264 * 179.97438 * 23 22 21 35 35 H 1.07999 * 119.62012 * 180.30803 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.1946 -0.9409 -3.6507 16 1 2.2308 -2.0137 -3.4612 17 6 3.5763 -0.4438 -3.9896 18 8 4.0996 0.4013 -3.3028 19 8 4.2252 -0.9391 -5.0552 20 6 1.2647 -0.6657 -4.8042 21 6 0.9390 -1.6735 -5.6993 22 6 0.0801 -1.3744 -6.7457 23 6 -0.4198 -0.0909 -6.8608 24 7 -0.0890 0.8424 -5.9901 25 6 0.7201 0.5922 -4.9791 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1609 3.4844 30 1 1.1488 0.5385 -2.5436 31 1 5.1089 -0.5891 -5.2327 32 1 1.3453 -2.6676 -5.5846 33 1 -0.1955 -2.1348 -7.4613 34 1 -1.0892 0.1504 -7.6734 35 1 0.9645 1.3810 -4.2831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059127.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:02 Heat of formation + Delta-G solvation = -89.737154 kcal Electronic energy + Delta-G solvation = -21453.572753 eV Core-core repulsion = 18030.804110 eV Total energy + Delta-G solvation = -3422.768642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99544 -39.83678 -38.70169 -36.08907 -35.04969 -33.77426 -32.69562 -31.52672 -30.28613 -27.60858 -25.14209 -23.97755 -23.33795 -22.80473 -20.98847 -19.59177 -18.20802 -17.45565 -16.98161 -16.58951 -16.45646 -16.06049 -15.54654 -15.19321 -14.62981 -14.40745 -14.10363 -13.91415 -13.35646 -13.29509 -12.98247 -12.68361 -12.45914 -12.05065 -11.55870 -11.46585 -11.03453 -10.82854 -10.75346 -10.67553 -10.27486 -10.04798 -9.97101 -9.70382 -9.34779 -8.98440 -8.88642 -8.71719 -8.35831 -6.03047 -4.06277 0.75646 1.01720 2.23988 2.78036 3.33173 3.40264 3.43009 3.50107 3.65334 3.87134 4.09550 4.40547 4.47645 4.58838 4.68208 4.79242 5.14100 5.23786 5.28352 5.31050 5.48748 5.81701 5.91103 6.11762 6.37687 6.49296 6.59244 6.67980 6.80660 6.90541 7.45110 7.69714 7.73181 7.90030 7.92245 8.07295 8.33668 9.01493 9.06164 9.58982 11.04690 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.004622 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.286837 B = 6056.497425 C = 6628.584065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.032 3.968 3 H 0.057 0.943 4 C -0.501 4.501 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.530 3.470 13 O -0.538 6.538 14 N -0.725 5.725 15 C 0.206 3.794 16 H 0.132 0.868 17 C 0.466 3.534 18 O -0.490 6.490 19 O -0.518 6.518 20 C -0.142 4.142 21 C -0.047 4.047 22 C -0.171 4.171 23 C 0.102 3.898 24 N -0.479 5.479 25 C 0.114 3.886 26 H 0.012 0.988 27 H 0.095 0.905 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.403 0.597 31 H 0.407 0.593 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -2.628 -19.655 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.075 0.925 4 C -0.539 4.539 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.321 3.679 13 O -0.413 6.413 14 N -0.381 5.381 15 C 0.096 3.904 16 H 0.150 0.850 17 C 0.305 3.695 18 O -0.375 6.375 19 O -0.329 6.329 20 C -0.145 4.145 21 C -0.073 4.073 22 C -0.191 4.191 23 C -0.055 4.055 24 N -0.187 5.187 25 C -0.043 4.043 26 H 0.031 0.969 27 H 0.113 0.887 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.239 0.761 31 H 0.266 0.734 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.175 0.825 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.022 -2.310 -19.205 19.449 hybrid contribution 1.062 -0.619 0.724 1.427 sum -0.960 -2.930 -18.481 18.736 Atomic orbital electron populations 1.21762 0.96303 0.99933 1.01129 1.18902 0.94242 0.97075 0.88681 0.92498 1.21159 1.31036 1.12842 0.88879 0.90703 1.24945 0.95092 0.95062 0.99121 1.69876 1.37052 1.23064 1.23491 0.86389 0.78604 0.79767 0.82438 1.19578 1.21025 1.21042 1.22193 0.77751 0.83958 0.84016 1.90538 1.37467 1.26895 1.86402 1.46288 1.54752 1.33128 1.03919 1.18876 0.85623 1.00714 0.85143 0.85025 1.24029 0.88747 0.79400 0.77337 1.90761 1.67427 1.30219 1.49096 1.84510 1.35152 1.66205 1.47036 1.20543 1.00383 0.96133 0.97461 1.21483 0.94265 0.99186 0.92359 1.22154 0.98977 0.98617 0.99339 1.22889 0.96727 0.89171 0.96740 1.67769 1.12449 1.35518 1.03001 1.22640 0.92078 0.94990 0.94627 0.96850 0.88654 0.94868 0.92970 0.76052 0.73406 0.84031 0.84284 0.82484 0.82604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.87 37.16 0.33 -2.70 16 2 C 0.03 0.80 2.64 -92.92 -0.25 0.55 16 3 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 4 C -0.50 -14.25 8.37 -34.44 -0.29 -14.54 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.19 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.53 12.03 6.98 -10.99 -0.08 11.95 16 13 O -0.54 -13.79 15.12 5.56 0.08 -13.71 16 14 N -0.72 -12.60 4.45 -56.07 -0.25 -12.85 16 15 C 0.21 3.01 2.70 -70.24 -0.19 2.82 16 16 H 0.13 1.94 7.47 -51.93 -0.39 1.56 16 17 C 0.47 7.16 7.65 36.00 0.28 7.44 16 18 O -0.49 -9.39 17.08 -18.75 -0.32 -9.71 16 19 O -0.52 -5.92 13.34 -39.28 -0.52 -6.44 16 20 C -0.14 -1.69 4.89 -104.48 -0.51 -2.20 16 21 C -0.05 -0.45 9.82 -39.28 -0.39 -0.83 16 22 C -0.17 -1.38 10.11 -39.44 -0.40 -1.78 16 23 C 0.10 0.94 11.18 -17.54 -0.20 0.74 16 24 N -0.48 -5.75 10.36 -13.25 -0.14 -5.88 16 25 C 0.11 1.39 10.23 -17.55 -0.18 1.21 16 26 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.40 6.19 6.29 -40.82 -0.26 5.94 16 31 H 0.41 3.00 9.10 45.56 0.41 3.41 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.16 1.82 6.90 -52.49 -0.36 1.46 16 LS Contribution 310.20 15.07 4.67 4.67 Total: -1.00 -35.05 310.20 -5.73 -40.78 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.90 Total: 6.62 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.96 Total: 4.21 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.24 Total: -43.30 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.76 Total: -29.85 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.05 -5.73 -40.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059127.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.960 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds